Omics of Covid-19 disease

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Aktuelle Version vom 2. Dezember 2022, 20:07 Uhr

Maybe, specific information might be found in the raw readout of proteomic datasets.

Inhaltsverzeichnis

1 Searchterm applied
2 Covid Omics Databases and Webservers
3 Other interesting papers
4 Full Dataset
5 Full dataset second search term

Searchterm applied

(gives 9900 papers on june 7th 2022)

http://www.moremed.org/SiteSearch.php?S1=transcriptom*+OR+transcription*+OR+proteom*+OR+gene+expression+OR+interactom*+OR+omics+OR+hub+genes+OR+epigenom*+OR+dna+methylation+OR+metabolom*+OR+gene+chip+OR+transcripts+OR+microarray+OR+receptorom*+OR+glycom*+OR+differential+expression&S2=covid19+OR+covid-19+OR+sars-cov2+OR+sars-cov-2+&S3=&submit=submit&px1=proxy.nationallizenzen.de&px2=&px3=&px4=&R=all&Y0=1500&Y1=2025

(additional 4493 papers) NOT SCANNED YET

http://www.moremed.org/SiteSearch.php?S1=gwas+OR+signature+OR+system+biology+OR+systems+biology+OR+atlas+OR+multiomic*&S2=%28covid19+OR+covid-19+OR+sars-cov2+OR+sars-cov-2+%29+AND+1995%3A2022%2F06%2F07%5BEDAT%5D&S3=transcriptom*+OR+transcription*+OR+proteom*+OR+gene+expression+OR+interactom*+OR+omics+OR+hub+genes+OR+epigenom*+OR+dna+methylation+OR+metabolom*+OR+gene+chip+OR+transcripts+OR+microarray+OR+receptorom*+OR+glycom*+OR+differential+expression&submit=submit&px1=proxy.nationallizenzen.de&px2=&px3=&px4=&R=all&Y0=1500&Y1=2025

14.500 papers were retrieved from about 200.000 covid papers. while reading the medline lists, papers were assigned to three classes:

a) dedicated databases or big datasets, some other db included, about 200 items

b) papers with very important topics, less than 100 items

c) other interesting papers, about 2500 items

Covid Omics Databases and Webservers

34845454 2021. Identifying disease-critical cell types and cellular processes across the human body by integration of single-cell profiles and human genetics.
34127975 2021. Implicating Gene and Cell Networks Responsible for Differential COVID-19 Host Responses via an Interactive Single Cell Web Portal.
34075382 2021. CovidExpress: an interactive portal for intuitive investigation on SARS-CoV-2 related transcriptomes.
32587962 2020. The IMEx Coronavirus interactome: an evolving map of Coronaviridae-Host molecular interactions.
33206959 2020. The IMEx coronavirus interactome: an evolving map of Coronaviridae-host molecular interactions.
33413085 2021. H2V: a database of human genes and proteins that respond to SARS-CoV-2, SARS-CoV, and MERS-CoV infection. [1]
34448623 2021. A Novel Pathway Network Analytics Method Based on Graph Theory.
33605735 2021. Open Science Resources for the Mass Spectrometry-Based Analysis of SARS-CoV-2.
32930583 2020. Quantification of mRNA Expression Using Single-Molecule Nanopore Sensing.
33553941 2021. SARSCOVIDB-A New Platform for the Analysis of the Molecular Impact of SARS-CoV-2 Viral Infection. [2]
33501381 2020. Fostering global data sharing: highlighting the recommendations of the Research Data Alliance COVID-19 working group.
34718395 2022. A comprehensive review of the analysis and integration of omics data for SARS-CoV-2 and COVID-19.
34424948 2021. DeepDRIM: a deep neural network to reconstruct cell-type-specific gene regulatory network using single-cell RNA-seq data.
34111889 2021. Single-cell multi-omics sequencing: application trends, COVID-19, data analysis issues and prospects.
34076249 2021. Transcriptomic studies revealed pathophysiological impact of COVID-19 to predominant health conditions.
34009288 2021. Multi-omics data integration and network-based analysis drives a multiplex drug repurposing approach to a shortlist of candidate drugs against COVID-19.
33592108 2021. Data science in unveiling COVID-19 pathogenesis and diagnosis: evolutionary origin to drug repurposing.
33416848 2021. SARS-CoV-2 3D database: understanding the coronavirus proteome and evaluating possible drug targets.
33057582 2021. Web tools to fight pandemics: the COVID-19 experience.
34767776 2021. COVID-19 immune features revealed by a large-scale single-cell transcriptome atlas.
33657410 2021. COVID-19 immune features revealed by a large-scale single-cell transcriptome atlas.
34471261 2021. Multiomics: unraveling the panoramic landscapes of SARS-CoV-2 infection.
34348131 2021. The COVIDome Explorer researcher portal. [3]
33310371 2021. Recent trends on omics and bioinformatics approaches to study SARS-CoV-2: A bibliometric analysis and mini-review.
33301953 2021. Next-generation computational tools and resources for coronavirus research: From detection to vaccine discovery.
32864402 2020. Dataset of mutational analysis, miRNAs targeting SARS-CoV-2 genes and host gene expression in SARS-CoV and SARS-CoV-2 infections.
32835036 2020. Quantitative proteomic dataset from oro- and naso-pharyngeal swabs used for COVID-19 diagnosis: Detection of viral proteins and host's biological processes altered by the infection.
35134150 2022. SCANNER: a web platform for annotation, visualization and sharing of single cell RNA-seq data.
33009914 2021. A database resource and online analysis tools for coronaviruses on a historical and global scale.
32404885 2020. The COVID-19 Host Genetics Initiative, a global initiative to elucidate the role of host genetic factors in susceptibility and severity of the SARS-CoV-2 virus pandemic.
33194800 2020. Systems Biology Approaches for Therapeutics Development Against COVID-19.
35003208 2021. COVID-19 Transcriptomic Atlas: A Comprehensive Analysis of COVID-19 Related Transcriptomics Datasets.
34975833 2021. Understanding Gene Expression and Transcriptome Profiling of COVID-19: An Initiative Towards the Mapping of Protective Immunity Genes Against SARS-CoV-2 Infection.
32670298 2020. Immune and Metabolic Signatures of COVID-19 Revealed by Transcriptomics Data Reuse.
34557504 2021. Unraveling Risk Genes of COVID-19 by Multi-Omics Integrative Analyses.
35047913 2021. The SIRAH-CoV-2 Initiative: A Coarse-Grained Simulations' Dataset of the SARS-CoV-2 Proteome.
35531299 2022. The Intricacy of the Viral-Human Protein Interaction Networks: Resources, Data, and Analyses.
33324374 2020. Comparative Transcriptome Analysis Reveals the Intensive Early Stage Responses of Host Cells to SARS-CoV-2 Infection.
33585554 2020. SARS-CoV-2 Proteins Exploit Host's Genetic and Epigenetic Mediators for the Annexation of Key Host Signaling Pathways.
34530086 2022. An overview of human proteins and genes involved in SARS-CoV-2 infection.
33263093 2021. Gene expression profiling of corona virus microarray datasets to identify crucial targets in COVID-19 patients.
34401607 2021. Systems level insights into the impact of airborne exposure on SARS-CoV-2 pathogenesis and COVID-19 outcome - A multi-omics big data study.
33553808 2020. Bioinformatics analyses of significant genes, related pathways, and candidate diagnostic biomarkers and molecular targets in SARS-CoV-2/COVID-19.
33809949 2021. A Resource for the Network Representation of Cell Perturbations Caused by SARS-CoV-2 Infection.
34209818 2021. Toward a Coronavirus Knowledge Graph.
35002537 2021. Identification of Differentially Expressed Genes in COVID-19 and Integrated Bioinformatics Analysis of Signaling Pathways.
35184750 2022. Systematic comparison of published host gene expression signatures for bacterial/viral discrimination.
34001247 2021. An atlas connecting shared genetic architecture of human diseases and molecular phenotypes provides insight into COVID-19 susceptibility.
34350693 2021. Comprehensive investigation of RNA-sequencing dataset reveals the hub genes and molecular mechanisms of coronavirus disease 2019 acute respiratory distress syndrome.
34675627 2021. Construction and Investigation of Competing Endogenous RNA Networks and Candidate Genes Involved in SARS-CoV-2 Infection.
34623759 2021. New insights into genetic characteristics between multiple myeloma and COVID-19: An integrative bioinformatics analysis of gene expression omnibus microarray and the cancer genome atlas data.
35269564 2022. COVIDomics: The Proteomic and Metabolomic Signatures of COVID-19.
33207699 2020. Large-Scale Plasma Analysis Revealed New Mechanisms and Molecules Associated with the Host Response to SARS-CoV-2.
32236644 2020. Identification of a potential mechanism of acute kidney injury during the COVID-19 outbreak: a study based on single-cell transcriptome analysis.
34522848 2021. An interactive single cell web portal identifies gene and cell networks in COVID-19 host responses.
34487344 2021. A pathway map of signaling events triggered upon SARS-CoV infection.
33730024 2021. Single-cell longitudinal analysis of SARS-CoV-2 infection in human airway epithelium identifies target cells, alterations in gene expression, and cell state changes.
33901166 2021. The first few days of a SARS-CoV-2 infection viewed at single-cell resolution.
34260589 2021. COVIDomic: A multi-modal cloud-based platform for identification of risk factors associated with COVID-19 severity.
35468151 2022. Multi-omic analysis reveals enriched pathways associated with COVID-19 and COVID-19 severity.
35390032 2022. Identification of host transcriptome-guided repurposable drugs for SARS-CoV-1 infections and their validation with SARS-CoV-2 infections by using the integrated bioinformatics approaches.
35085325 2022. Identification of potentially anti-COVID-19 active drugs using the connectivity MAP.
33082228 2020. Transcriptional and proteomic insights into the host response in fatal COVID-19 cases.
35377064 2022. Differential transcriptomic landscapes of multiple organs from SARS-CoV-2 early infected rhesus macaques.
32664949 2020. SARS-CoV-2 induces transcriptional signatures in human lung epithelial cells that promote lung fibrosis.
34127904 2021. Network-based transcriptomic analysis identifies the genetic effect of COVID-19 to chronic kidney disease patients: A bioinformatics approach.
32963239 2020. Consensus transcriptional regulatory networks of coronavirus-infected human cells.
34031435 2021. Integrative web-based analysis of omics data for study of drugs against SARS-CoV-2.
33782412 2021. Comprehensive transcriptomic analysis of COVID-19 blood, lung, and airway.
33510359 2021. Meta-analysis of host transcriptional responses to SARS-CoV-2 infection reveals their manifestation in human tumors.
34907210 2021. Identification of transcriptional regulatory network associated with response of host epithelial cells to SARS-CoV-2.
34376762 2021. Comparative transcriptome analyses reveal genes associated with SARS-CoV-2 infection of human lung epithelial cells.
33318519 2020. Gene expression network analysis provides potential targets against SARS-CoV-2.
33863870 2021. COVID-19: complexity of disease severity revealed by systemic and localized single cell immune atlas.
33859163 2021. Multi-platform omics analysis reveals molecular signature for COVID-19 pathogenesis, prognosis and drug target discovery.
32670298 2020. Immune and Metabolic Signatures of COVID-19 Revealed by Transcriptomics Data Reuse.
34557504 2021. Unraveling Risk Genes of COVID-19 by Multi-Omics Integrative Analyses.
35047913 2021. The SIRAH-CoV-2 Initiative: A Coarse-Grained Simulations' Dataset of the SARS-CoV-2 Proteome.
35531299 2022. The Intricacy of the Viral-Human Protein Interaction Networks: Resources, Data, and Analyses.
33324374 2020. Comparative Transcriptome Analysis Reveals the Intensive Early Stage Responses of Host Cells to SARS-CoV-2 Infection.
33585554 2020. SARS-CoV-2 Proteins Exploit Host's Genetic and Epigenetic Mediators for the Annexation of Key Host Signaling Pathways.
34530086 2022. An overview of human proteins and genes involved in SARS-CoV-2 infection.
33263093 2021. Gene expression profiling of corona virus microarray datasets to identify crucial targets in COVID-19 patients.
34401607 2021. Systems level insights into the impact of airborne exposure on SARS-CoV-2 pathogenesis and COVID-19 outcome - A multi-omics big data study.
33553808 2020. Bioinformatics analyses of significant genes, related pathways, and candidate diagnostic biomarkers and molecular targets in SARS-CoV-2/COVID-19.
33809949 2021. A Resource for the Network Representation of Cell Perturbations Caused by SARS-CoV-2 Infection.
34209818 2021. Toward a Coronavirus Knowledge Graph.
35002537 2021. Identification of Differentially Expressed Genes in COVID-19 and Integrated Bioinformatics Analysis of Signaling Pathways.
34001247 2021. An atlas connecting shared genetic architecture of human diseases and molecular phenotypes provides insight into COVID-19 susceptibility.
34350693 2021. Comprehensive investigation of RNA-sequencing dataset reveals the hub genes and molecular mechanisms of coronavirus disease 2019 acute respiratory distress syndrome.
34675627 2021. Construction and Investigation of Competing Endogenous RNA Networks and Candidate Genes Involved in SARS-CoV-2 Infection.
34623759 2021. New insights into genetic characteristics between multiple myeloma and COVID-19: An integrative bioinformatics analysis of gene expression omnibus microarray and the cancer genome atlas data.
35269564 2022. COVIDomics: The Proteomic and Metabolomic Signatures of COVID-19.
33207699 2020. Large-Scale Plasma Analysis Revealed New Mechanisms and Molecules Associated with the Host Response to SARS-CoV-2.
32236644 2020. Identification of a potential mechanism of acute kidney injury during the COVID-19 outbreak: a study based on single-cell transcriptome analysis.
34522848 2021. An interactive single cell web portal identifies gene and cell networks in COVID-19 host responses.
34487344 2021. A pathway map of signaling events triggered upon SARS-CoV infection.
32806897 2020. Integrative Modeling of Quantitative Plasma Lipoprotein, Metabolic, and Amino Acid Data Reveals a Multiorgan Pathological Signature of SARS-CoV-2 Infection.
35150462 2022. Thrombosis pathways in COVID-19 vs. influenza-associated ARDS: A targeted proteomics approach.
33413422 2021. Transcriptome of nasopharyngeal samples from COVID-19 patients and a comparative analysis with other SARS-CoV-2 infection models reveal disparate host responses against SARS-CoV-2.
34876157 2021. Multi-omics approach to COVID-19: a domain-based literature review.
32811513 2020. The current landscape of coronavirus-host protein-protein interactions.
34319784 2021. Kinetic Multi-omic Analysis of Responses to SARS-CoV-2 Infection in a Model of Severe COVID-19.
34106002 2021. Viral and Host Transcriptomes in SARS-CoV-2-Infected Human Lung Cells.
35530264 2022. Plasma Proteomics of COVID-19-Associated Cardiovascular Complications: Implications for Pathophysiology and Therapeutics.
34254058 2021. Cov-MS: A Community-Based Template Assay for Mass-Spectrometry-Based Protein Detection in SARS-CoV-2 Patients.
35511435 2022. Single-cell transcriptomic profiling of lung endothelial cells identifies dynamic inflammatory and regenerative subpopulations.
35175937 2022. Temporal transcriptomic analysis using TrendCatcher identifies early and persistent neutrophil activation in severe COVID-19.
34618691 2021. Human nasal wash RNA-Seq reveals distinct cell-specific innate immune responses in influenza versus SARS-CoV-2.
33284134 2021. Metabolic reprogramming and epigenetic changes of vital organs in SARS-CoV-2-induced systemic toxicity.
34642644 2021. A Pilot Study of Urine Proteomics in COVID-19-Associated Acute Kidney Injury.
35368565 2022. Single-Cell RNA Sequencing of Urinary Cells Reveals Distinct Cellular Diversity in COVID-19-Associated AKI.
35110370 2022. Proteomic landscape of SARS-CoV-2- and MERS-CoV-infected primary human renal epithelial cells.
34425963 2021. Acute Kidney Injury in Severe COVID-19 Has Similarities to Sepsis-Associated Kidney Injury: A Multi-Omics Study.
35604092 2022. The Translational Landscape of SARS-CoV-2-infected Cells Reveals Suppression of Innate Immune Genes.
34766152 2021. Application of omics technology to combat the COVID-19 pandemic.
33833618 2021. Whole-Transcriptome RNA Sequencing Reveals Significant Differentially Expressed mRNAs, miRNAs, and lncRNAs and Related Regulating Biological Pathways in the Peripheral Blood of COVID-19 Patients.
35547845 2022. Whole Genome DNA and RNA Sequencing of Whole Blood Elucidates the Genetic Architecture of Gene Expression Underlying a Wide Range of Diseases.
33758879 2021. The COVIDome Explorer Researcher Portal.
32743614 2020. Large-scale Multi-omic Analysis of COVID-19 Severity.
33398303 2020. An atlas connecting shared genetic architecture of human diseases and molecular phenotypes provides insight into COVID-19 susceptibility.
33435351 2021. Comprehensive Meta-Analysis of COVID-19 Global Metabolomics Datasets.
34153417 2021. Construction of an autophagy interaction network based on competitive endogenous RNA reveals the key pathways and central genes of SARS-CoV-2 infection in vivo.
34118193 2021. Global analysis of protein-RNA interactions in SARS-CoV-2-infected cells reveals key regulators of infection.
33989516 2021. The SARS-CoV-2 RNA interactome.
35504488 2022. Mapping molecular gene signatures mediated by SARS-COV-2 and large-scale and genome-wide transcriptomics comparative analysis among respiratory viruses of medical importance.
34400346 2021. Proteomic Signature of Host Response to SARS-CoV-2 Infection in the Nasopharynx.
34089862 2021. Proteomics-Based Insights Into the SARS-CoV-2-Mediated COVID-19 Pandemic: A Review of the First Year of Research.
34664389 2021. COVID19 Disease Map, a computational knowledge repository of virus-host interaction mechanisms.
35300459 2022. Transcriptogram analysis reveals relationship between viral titer and gene sets responses during Corona-virus infection.
34876692 2021. A single-cell transcriptomic landscape of the lungs of patients with COVID-19.
34315893 2021. Single-cell transcriptome of bronchoalveolar lavage fluid reveals sequential change of macrophages during SARS-CoV-2 infection in ferrets.
34315889 2021. The trans-omics landscape of COVID-19.
33597532 2021. Dysregulated transcriptional responses to SARS-CoV-2 in the periphery.
34381043 2021. Temporal omics analysis in Syrian hamsters unravel cellular effector responses to moderate COVID-19.
33879890 2021. Single-cell multi-omics analysis of the immune response in COVID-19.
34876996 2021. Post-mortem tissue proteomics reveals the pathogenesis of multi-organ injuries of COVID-19.
33915569 2021. COVID-19 tissue atlases reveal SARS-CoV-2 pathology and cellular targets.
33915568 2021. A molecular single-cell lung atlas of lethal COVID-19.
34237774 2021. Mapping the human genetic architecture of COVID-19.
33274348 2020. CovMulNet19, Integrating Proteins, Diseases, Drugs, and Symptoms: A Network Medicine Approach to COVID-19.
34031419 2021. Comparative transcriptome analysis reveals key epigenetic targets in SARS-CoV-2 infection.
35100418 2022. AggMapNet: enhanced and explainable low-sample omics deep learning with feature-aggregated multi-channel networks.
34761257 2022. SCoV2-MD: a database for the dynamics of the SARS-CoV-2 proteome and variant impact predictions.
34718748 2022. MVIP: multi-omics portal of viral infection.
34634820 2022. SCovid: single-cell atlases for exposing molecular characteristics of COVID-19 across 10 human tissues.
34554255 2022. COVID19db: a comprehensive database platform to discover potential drugs and targets of COVID-19 at whole transcriptomic scale.
35557984 2022. Weighted Gene Co-Expression Network Analysis to Identify Potential Biological Processes and Key Genes in COVID-19-Related Stroke.
34457122 2021. Comprehensive Analysis of the Systemic Transcriptomic Alternations and Inflammatory Response during the Occurrence and Progress of COVID-19.
32667665 2020. Transcriptome-based drug repositioning for coronavirus disease 2019 (COVID-19).
33842903 2021. Secondary analysis of transcriptomes of SARS-CoV-2 infection models to characterize COVID-19.
33868814 2021. Multi-schema computational prediction of the comprehensive SARS-CoV-2 vs. human interactome.
32566414 2020. Host transcriptome-guided drug repurposing for COVID-19 treatment: a meta-analysis based approach.
33730024 2021. Single-cell longitudinal analysis of SARS-CoV-2 infection in human airway epithelium identifies target cells, alterations in gene expression, and cell state changes.
33901166 2021. The first few days of a SARS-CoV-2 infection viewed at single-cell resolution.
34260589 2021. COVIDomic: A multi-modal cloud-based platform for identification of risk factors associated with COVID-19 severity.
35468151 2022. Multi-omic analysis reveals enriched pathways associated with COVID-19 and COVID-19 severity.
35390032 2022. Identification of host transcriptome-guided repurposable drugs for SARS-CoV-1 infections and their validation with SARS-CoV-2 infections by using the integrated bioinformatics approaches.
35085325 2022. Identification of potentially anti-COVID-19 active drugs using the connectivity MAP.
33082228 2020. Transcriptional and proteomic insights into the host response in fatal COVID-19 cases.
35377064 2022. Differential transcriptomic landscapes of multiple organs from SARS-CoV-2 early infected rhesus macaques.
32664949 2020. SARS-CoV-2 induces transcriptional signatures in human lung epithelial cells that promote lung fibrosis.
34127904 2021. Network-based transcriptomic analysis identifies the genetic effect of COVID-19 to chronic kidney disease patients: A bioinformatics approach.
32963239 2020. Consensus transcriptional regulatory networks of coronavirus-infected human cells.
34031435 2021. Integrative web-based analysis of omics data for study of drugs against SARS-CoV-2.
33782412 2021. Comprehensive transcriptomic analysis of COVID-19 blood, lung, and airway.
34907210 2021. Identification of transcriptional regulatory network associated with response of ho
34376762 2021. Comparative transcriptome analyses reveal genes associated with SARS-CoV-2 infection of human lung epithelial cells.
33318519 2020. Gene expression network analysis provides potential targets against SARS-CoV-2.
33863870 2021. COVID-19: complexity of disease severity revealed by systemic and localized single cell immune atlas.
33859163 2021. Multi-platform omics analysis reveals molecular signature for COVID-19 pathogenesis, prognosis and drug target discovery.
33846224 2021. Longitudinal Peripheral Blood Transcriptional Analysis Reveals Molecular Signatures of Disease Progression in COVID-19 Patients.
33813307 2021. A SARS-CoV-2 -human metalloproteome interaction map.
33735949 2021. OverCOVID: an integrative web portal for SARS-CoV-2 bioinformatics resources.
34080738 2021. Critical COVID-19 is associated with distinct leukocyte phenotypes and transcriptome patterns.
33162722 2020. A comprehensive overview of proteomics approach for COVID 19: new perspectives in target therapy strategies.
34550702 2021. Discovery Proteomics for COVID-19: Where We Are Now.
34379420 2021. A Multi-omics Longitudinal Study Reveals Alteration of the Leukocyte Activation Pathway in COVID-19 Patients.
33666082 2021. Ubiquitin-Modified Proteome of SARS-CoV-2-Infected Host Cells Reveals Insights into Virus-Host Interaction and Pathogenesis.
34080435 2021. Proteomic Analysis Identifies Prolonged Disturbances in Pathways Related to Cholesterol Metabolism and Myocardium Function in the COVID-19 Recovery Stage.
34077217 2021. Mass Spectrometric Analysis of Urine from COVID-19 Patients for Detection of SARS-CoV-2 Viral Antigen and to Study Host Response.
33464917 2021. Proteomic Approaches to Study SARS-CoV-2 Biology and COVID-19 Pathology.
33426872 2021. Role of Multiomics Data to Understand Host-Pathogen Interactions in COVID-19 Pathogenesis.
33103435 2020. Computational Identification of Human Biological Processes and Protein Sequence Motifs Putatively Targeted by SARS-CoV-2 Proteins Using Protein-Protein Interaction Networks.
32654489 2020. Repurpose Open Data to Discover Therapeutics for COVID-19 Using Deep Learning.
33245774 2021. PAGER-CoV: a comprehensive collection of pathways, annotated gene-lists and gene signatures for coronavirus disease studies.
35511057 2022. deepHPI: a comprehensive deep learning platform for accurate prediction and visualization of host-pathogen protein-protein interactions.

33147627 2021. Computational strategies to combat COVID-19: useful tools to accelerate SARS-CoV-2 and coronavirus research.
32715315 2021. Virus-CKB: an integrated bioinformatics platform and analysis resource for COVID-19 research.
34901953 2021. A call for discovery: Re-envisioning The Cancer Genome Atlas as a blueprint for a TCGA2.0-The COVID-19 Genome Atlas.
34181169 2021. SARS-CoV-2 signaling pathway map: A functional landscape of molecular mechanisms in COVID-19.
33070389 2021. The BioGRID database: A comprehensive biomedical resource of curated protein, genetic, and chemical interactions.
32371892 2020. COVID-19 Disease Map, building a computational repository of SARS-CoV-2 virus-host interaction mechanisms.
32533075 2020. CIDO, a community-based ontology for coronavirus disease knowledge and data integration, sharing, and analysis.
33903708 2021. The microRNA analysis portal is a next-generation tool for exploring and analyzing miRNA-focused data in the literature.
35594018 2022. Databases, Knowledgebases, and Software Tools for Virus Informatics.
33843398 2021. Knowledge graphs and their applications in drug discovery.
34750573 2021. COVID-19 lung atlas.
32908256 2020. Exploring the structural distribution of genetic variation in SARS-CoV-2 with the COVID-3D online resource.
35652743 2022. The Karolinska KI/K COVID-19 Immune Atlas: An open resource for immunological research and educational purposes.
35612186 2022. CovidGraph: Integrating COVID-19 Data.
33136473 2020. A Web-Based Platform on Coronavirus Disease-19 to Maintain Predicted Diagnostic, Drug, and Vaccine Candidates.

related

[Multiomic atlas with functional stratification and developmental dynamics of zebrafish cis-regulatory elements https://www.nature.com/articles/s41588-022-01089-w.pdf]

Other interesting papers

these were retrieved by the filtered omics search1 and two and they seem to be important

35310032 2022. Integrating Metabolomics and Network Pharmacology to Explore the Protective Effect of Ginsenoside Re against Radiotherapy Injury in Mice.
35184750 2022. Systematic comparison of published host gene expression signatures for bacterial/viral discrimination.
34403366 2021. Self-sustaining IL-8 loops drive a prothrombotic neutrophil phenotype in severe COVID-19.
32903321 2020. Localization of Cell Receptor-Related Genes of SARS-CoV-2 in the Kidney through Single-Cell Transcriptome Analysis.
35339689 2022. Key benefits of dexamethasone and antibody treatment in COVID-19 hamster models revealed by single-cell transcriptomics.
34312385 2021. Single-cell RNA sequencing reveals ex vivo signatures of SARS-CoV-2-reactive T cells through 'reverse phenotyping'.
34262047 2021. Chronic lung diseases are associated with gene expression programs favoring SARS-CoV-2 entry and severity.
34116393 2021. Magnesium treatment on methylation changes of transmembrane serine protease 2 (TMPRSS2).
33521378 2021. Hypoxia-inducible factor (HIF): The link between obesity and COVID-19.
33991451 2021. Hypoxia induces expression of angiotensin-converting enzyme II in alveolar epithelial cells: Implications for the pathogenesis of acute lung injury in COVID-19.
34673800 2021. Klotho deficiency intensifies hypoxia-induced expression of IFN-alpha/beta through upregulation of RIG-I in kidneys.
33661927 2021. Hypoxia-induced inflammation: Profiling the first 24-hour posthypoxic plasma and central nervous system changes.
34108245 2021. HIF-1alpha is a negative regulator of interferon regulatory factors: Implications for interferon production by hypoxic monocytes. st epithelial cells to SARS-CoV-2.
35502829 2022. Bees can be trained to identify SARS-CoV-2 infected samples.
35543533 2022. Impaired exercise capacity in post-COVID syndrome: the role of VWF-ADAMTS13 axis.
35496775 2022. Cognitive deficits and memory impairments after COVID-19 (Covishield) vaccination.
35211628 2022. 29 m(6)A-RNA Methylation (Epitranscriptomic) Regulators Are Regulated in 41 Diseases including Atherosclerosis and Tumors Potentially via ROS Regulation - 102 Transcriptomic Dataset Analyses.
33307139 2021. Total infectomes of 162 SARS-CoV-2 cases using meta-transcriptomic sequencing.
35291496 2022. SARS-CoV-2 infecting endothelial cells, biochemical alterations, autopsy findings and outcomes in COVID-19, suggest role of hypoxia-inducible factor-1.
33913550 2021. SARS-CoV-2 ORF9b antagonizes type I and III interferons by targeting multiple components of the RIG-I/MDA-5-MAVS, TLR3-TRIF, and cGAS-STING signaling pathways.
35064792 2022. Disturbed lipid and amino acid metabolisms in COVID-19 patients.
34626364 2022. Activation of STAT3 signaling pathway in the kidney of COVID-19 patients.
33724837 2021. Systemic Perturbations in Amine and Kynurenine Metabolism Associated with Acute SARS-CoV-2 Infection and Inflammatory Cytokine Responses.
34920080 2022. The spike protein of SARS-CoV-2 induces heme oxygenase-1: Pathophysiologic implications.
34835015 2021. SARS-CoV-2 Spike Protein S1-Mediated Endothelial Injury and Pro-Inflammatory State Is Amplified by Dihydrotestosterone and Prevented by Mineralocorticoid Antagonism.
33991451 2021. Hypoxia induces expression of angiotensin-converting enzyme II in alveolar epithelial cells: Implications for the pathogenesis of acute lung injury in COVID-19.
34673800 2021. Klotho deficiency intensifies hypoxia-induced expression of IFN-alpha/beta through upregulation of RIG-I in kidneys.
33661927 2021. Hypoxia-induced inflammation: Profiling the first 24-hour posthypoxic plasma and central nervous system changes.
34108245 2021. HIF-1alpha is a negative regulator of interferon regulatory factors: Implications for interferon production by hypoxic monocytes.

33760431 2020. Pathology of COVID-19: Atlas
35195253 2022. A central role for amyloid fibrin microclots in long COVID/PASC: origins and therapeutic implications.
32685484 2020. Identification of COVID-19 Infection-Related Human Genes Based on a Random Walk Model in a Virus-Human Protein Interaction Network.
33269352 2020. A monoclonal antibody against staphylococcal enterotoxin B superantigen inhibits SARS-CoV-2 entry in vitro.
32511374 2020. An insertion unique to SARS-CoV-2 exhibits superantigenic character strengthened by recent mutations.
34328172 2021. SARS-CoV-2 spike protein S1 induces fibrin(ogen) resistant to fibrinolysis: implications for microclot formation in COVID-19.
35307504 2022. Intranasal delivery of SARS-CoV-2 spike protein is sufficient to cause olfactory damage, inflammation and olfactory dysfunction in zebrafish.
34382087 2021. Data-driven identification of SARS-CoV-2 subpopulations using PhenoGraph and binary-coded genomic data.
33993214 2021. Structure-based drug repurposing against COVID-19 and emerging infectious diseases: methods, resources and discoveries.
33636127 2021. In vivo structural characterization of the SARS-CoV-2 RNA genome identifies host proteins vulnerable to repurposed drugs.
32877699 2020. Loss of Bcl-6-Expressing T Follicular Helper Cells and Germinal Centers in COVID-19.
32526206 2020. SARS-CoV-2 Reverse Genetics Reveals a Variable Infection Gradient in the Respiratory Tract.
35273357 2022. Histones released by NETosis enhance the infectivity of SARS-CoV-2 by bridging the spike protein subunit 2 and sialic acid on host cells.
35235832 2022. SARS-CoV-2 Nsp13 encodes for an HLA-E-stabilizing peptide that abrogates inhibition of NKG2A-expressing NK cells.
33163980 2020. Pharmacological Inhibition of Acid Sphingomyelinase Prevents Uptake of SARS-CoV-2 by Epithelial Cells.
34749737 2021. The effect of vitamin D, magnesium and zinc supplements on interferon signaling pathways and their relationship to control SARS-CoV-2 infection.
34457214 2021. An overview of potential inhibitors targeting non-structural proteins 3 (PL(pro) and Mac1) and 5 (3CL(pro)/M(pro)) of SARS-CoV-2.
34759959 2021. Prioritisation of Candidate Genes Underpinning COVID-19 Host Genetic Traits Based on High-Resolution 3D Chromosomal Topology.
34423108 2021. A network-based systems biology approach for identification of shared Gene signatures between male and female in COVID-19 datasets.
34598736 2021. A potential role for cannabichromene in modulating TRP channels during acute respiratory distress syndrome.
34904376 2022. The atomic portrait of SARS-CoV-2 as captured by cryo-electron microscopy.
33295606 2020. SARS-CoV-2 spike protein binds to bacterial lipopolysaccharide and boosts proinflammatory activity.
35420442 2022. Single-Cell Landscape of Lungs Reveals Key Role of Neutrophil-Mediated Immunopathology during Lethal SARS-CoV-2 Infection.
31826992 2020. Molecular Mechanism for Antibody-Dependent Enhancement of Coronavirus Entry.
34189540 2021. Common and rare variant analyses combined with single-cell multiomics reveal cell-type-specific molecular mechanisms of COVID-19 severity.
34184910 2021. Molecular Mechanisms of the Toll-Like Receptor, STING, MAVS, Inflammasome, and Interferon Pathways.
34788328 2021. Angiotensin II receptor I auto-antibodies following SARS-CoV-2 infection.
34582497 2021. Drug repurposing for COVID-19 based on an integrative meta-analysis of SARS-CoV-2 induced gene signature in human airway epithelium.
33203681 2020. Global analysis of more than 50,000 SARS-CoV-2 genomes reveals epistasis between eight viral genes.
33314005 2021. Host metabolism dysregulation and cell tropism identification in human airway and alveolar organoids upon SARS-CoV-2 infection.
32671793 2020. Single-cell analysis reveals bronchoalveolar epithelial dysfunction in COVID-19 patients.
33970408 2021. Cystic fibrosis improves COVID-19 survival and provides clues for treatment of SARS-CoV-2.
33064832 2021. Commonalities Between COVID-19 and Radiation Injury.
34458775 2021. The chemical biology of coronavirus host-cell interactions.
34193418 2021. Identification of SARS-CoV-2-induced pathways reveals drug repurposing strategies.
34045524 2021. Dynamic changes in gene-to-gene regulatory networks in response to SARS-CoV-2 infection.
33257774 2020. Investigation of COVID-19 comorbidities reveals genes and pathways coincident with the SARS-CoV-2 viral disease.
35632517 2022. The Existence of at Least Three Genomic Signature Patterns and at Least Seven Subtypes of COVID-19 and the End of the Disease.
35632715 2022. The International Virus Bioinformatics Meeting 2022.
34696455 2021. Spike Proteins of SARS-CoV-2 Induce Pathological Changes in Molecular Delivery and Metabolic Function in the Brain Endothelial Cells.
34580855 2022. Hydroxychloroquine inhibits proteolytic processing of endogenous TLR7 protein in human primary plasmacytoid dendritic cells.
32908257 2020. Exploring the coronavirus pandemic with the WashU Virus Genome Browser.
32398875 2020. Single-cell landscape of bronchoalveolar immune cells in patients with COVID-19.

Full Dataset

the two collections above are the most on-topic results. there were much more items of covid interest retrieved. anything e.g. about 2000 of 10000 primary results including the above contents will be shown here, the above items have been subtracted"

31744152 2019. A Multi-Omics Study of Chicken Infected by Nephropathogenic Infectious Bronchitis Virus.
31776274 2020. Nucleocapsid Protein Recruitment to Replication-Transcription Complexes Plays a Crucial Role in Coronaviral Life Cycle.
32071427 2020. Virus against virus: a potential treatment for 2019-nCov (SARS-CoV-2) and other RNA viruses.
32102777 2020. The 2019 novel coronavirus resource.
32142596 2020. Machine Learning, COVID-19 (2019-nCoV), and multi-OMICS.
32167747 2020. Evidence of the COVID-19 Virus Targeting the CNS: Tissue Distribution, Host-Virus Interaction, and Proposed Neurotropic Mechanisms.
32188729 2020. Coronavirus Endoribonuclease and Deubiquitinating Interferon Antagonists Differentially Modulate the Host Response during Replication in Macrophages.
32194980 2020. Network-based drug repurposing for novel coronavirus 2019-nCoV/SARS-CoV-2.
32199615 2020. Single cell RNA sequencing of 13 human tissues identify cell types and receptors of human coronaviruses.
32218151 2020. Structural Genomics of SARS-CoV-2 Indicates Evolutionary Conserved Functional Regions of Viral Proteins.
32223537 2020. Competing endogenous RNA network profiling reveals novel host dependency factors required for MERS-CoV propagation.
32227090 2020. The ACE2 expression in human heart indicates new potential mechanism of heart injury among patients infected with SARS-CoV-2.
32228226 2020. Transcriptomic characteristics of bronchoalveolar lavage fluid and peripheral blood mononuclear cells in COVID-19 patients.
32228827 2020. [Exploration of omics mechanism and drug prediction of coronavirus-induced heart failure based on clinical bioinformatics].
32234303 2020. Multiomics Evaluation of Gastrointestinal and Other Clinical Characteristics of COVID-19.
32244779 2020. Master Regulator Analysis of the SARS-CoV-2/Human Interactome.
32272481 2020. Structure of M(pro) from SARS-CoV-2 and discovery of its inhibitors.
32283711 2020. scRNA-seq Profiling of Human Testes Reveals the Presence of the ACE2 Receptor, A Target for SARS-CoV-2 Infection in Spermatogonia, Leydig and Sertoli Cells.
32302675 2020. Comparative computational analysis of SARS-CoV-2 nucleocapsid protein epitopes in taxonomically related coronaviruses.
32303592 2020. Human Leukocyte Antigen Susceptibility Map for Severe Acute Respiratory Syndrome Coronavirus 2.
32307550 2020. Downregulated Gene Expression Spectrum and Immune Responses Changed During the Disease Progression in Patients With COVID-19.
32311462 2020. On the molecular determinants of the SARS-CoV-2 attack.
32325252 2020. COVID-19 pathophysiology: A review.
32325642 2020. A Novel Reverse Transcription Loop-Mediated Isothermal Amplification Method for Rapid Detection of SARS-CoV-2.
32327413 2020. Genetic Roadmap for Kidney Involvement of Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Infection.
32330414 2020. The Architecture of SARS-CoV-2 Transcriptome.
32344568 2020. RT-qPCR Testing of SARS-CoV-2: A Primer.
32345362 2020. Expression of the SARS-CoV-2 cell receptor gene ACE2 in a wide variety of human tissues.
32353859 2020. A SARS-CoV-2 protein interaction map reveals targets for drug repurposing.
32368569 2020. The molecular biology of intracellular events during Coronavirus infection cycle.
32374823 2020. COVID-2019-associated overexpressed Prevotella proteins mediated host-pathogen interactions and their role in coronavirus outbreak.
32376402 2020. Transcriptional landscape of SARS-CoV-2 infection dismantles pathogenic pathways activated by the virus, proposes unique sex-specific differences and predicts tailored therapeutic strategies.
32377375 2020. Immune cell profiling of COVID-19 patients in the recovery stage by single-cell sequencing.
32385990 2020. [Visualization analysis on treatment of coronavirus based on knowledge graph].
32391393 2020. Digesting the crisis: autophagy and coronaviruses.
32393985 2021. Therapeutic targets and signaling mechanisms of vitamin C activity against sepsis: a bioinformatics study.

32405156 2020. Synergistic antiviral effect of hydroxychloroquine and azithromycin in combination against SARS-CoV-2: What molecular dynamics studies of virus-host interactions reveal.
32407669 2020. Heightened Innate Immune Responses in the Respiratory Tract of COVID-19 Patients.
32408336 2020. Proteomics of SARS-CoV-2-infected host cells reveals therapy targets.
32437232 2020. Virus-induced genetics revealed by multidimensional precision medicine transcriptional workflow applicable to COVID-19.
32437596 2020. Pulmonary Vascular Endothelialitis, Thrombosis, and Angiogenesis in Covid-19.
32444466 2020. The Landscape of Human Cancer Proteins Targeted by SARS-CoV-2.
32452701 2020. An up-to-date overview of computational polypharmacology in modern drug discovery.
32458111 2020. Angiopoietin-2 as a marker of endothelial activation is a good predictor factor for intensive care unit admission of COVID-19 patients.
32461193 2020. Potential antigenic cross-reactivity between SARS-CoV-2 and human tissue with a possible link to an increase in autoimmune diseases.
32462744 2020. Shortlisting SARS-CoV-2 Peptides for Targeted Studies from Experimental Data-Dependent Acquisition Tandem Mass Spectrometry Data.
32463365 2020. Knowledge synthesis of 100 million biomedical documents augments the deep expression profiling of coronavirus receptors.
32463434 2021. Metatranscriptomic Characterization of Coronavirus Disease 2019 Identified a Host Transcriptional Classifier Associated With Immune Signaling.
32467561 2020. Immune response in COVID-19: addressing a pharmacological challenge by targeting pathways triggered by SARS-CoV-2.
32468052 2020. Pancancer analysis of transmembrane protease serine 2 and cathepsin L that mediate cellular SARSCoV2 infection leading to COVID-19.
32473352 2020. Understanding the B and T cell epitopes of spike protein of severe acute respiratory syndrome coronavirus-2: A computational way to predict the immunogens.
32473977 2020. Unfolding SARS-CoV-2 viral genome to understand its gene expression regulation.
32475052 2020. Binding affinities of 438 HLA proteins to complete proteomes of seven pandemic viruses and distributions of strongest and weakest HLA peptide binders in populations worldwide.
32479746 2020. Host-Viral Infection Maps Reveal Signatures of Severe COVID-19 Patients.
32481719 2020. The Role of MicroRNA in the Airway Surface Liquid Homeostasis.
32492406 2020. Proteomic and Metabolomic Characterization of COVID-19 Patient Sera.
32494691 2020. Surviving COVID-19: A disease tolerance perspective.
32495654 2020. Targeting SARS-CoV-2 using polycomb inhibitors as antiviral agents.
32496587 2020. Distribution of ACE2, CD147, CD26, and other SARS-CoV-2 associated molecules in tissues and immune cells in health and in asthma, COPD, obesity, hypertension, and COVID-19 risk factors.
32497778 2020. A pharmacological interactome between COVID-19 patient samples and human sensory neurons reveals potential drivers of neurogenic pulmonary dysfunction.
32503824 2020. Endoplasmic Reticulum Stress Markers in SARS-COV-2 Infection and Pneumonia: Case-Control Study.
32504168 2020. Impact of glycoscience in fighting Covid-19.
32510973 2020. Decoding SARS-CoV-2 hijacking of host mitochondria in COVID-19 pathogenesis.
32511305 2020. Analysis of Infected Host Gene Expression Reveals Repurposed Drug Candidates and Time-Dependent Host Response Dynamics for COVID-19.
32511326 2020. Type 2 and interferon inflammation strongly regulate SARS-CoV-2 related gene expression in the airway epithelium.
32511341 2020. Network Analysis and Transcriptome Profiling Identify Autophagic and Mitochondrial Dysfunctions in SARS-CoV-2 Infection.
32511352 2020. Shotgun Transcriptome and Isothermal Profiling of SARS-CoV-2 Infection Reveals Unique Host Responses, Viral Diversification, and Drug Interactions.
32511361 2020. The Host Cell ViroCheckpoint: Identification and Pharmacologic Targeting of Novel Mechanistic Determinants of Coronavirus-Mediated Hijacked Cell States.
32511372 2020. Nrf2 Activator PB125(R) as a Potential Therapeutic Agent Against COVID-19.
32511379 2020. Consensus transcriptional regulatory networks of coronavirus-infected human cells.
32511381 2020. An in silico map of the SARS-CoV-2 RNA Structurome.
32511382 2020. Single-cell longitudinal analysis of SARS-CoV-2 infection in human airway epithelium.
32511476 2020. Upper airway gene expression differentiates COVID-19 from other acute respiratory illnesses and reveals suppression of innate immune responses by SARS-CoV-2.
32511543 2020. Targeted Immunosuppression Distinguishes COVID-19 from Influenza in Moderate and Severe Disease.
32511571 2020. COVID-19 infection results in alterations of the kynurenine pathway and fatty acid metabolism that correlate with IL-6 levels and renal status.
32511627 2020. ACE2 Expression is Increased in the Lungs of Patients with Comorbidities Associated with Severe COVID-19.
32511656 2020. Disruption of the CCL5/RANTES-CCR5 Pathway Restores Immune Homeostasis and Reduces Plasma Viral Load in Critical COVID-19.
32512929 2020. The Prediction of miRNAs in SARS-CoV-2 Genomes: hsa-miR Databases Identify 7 Key miRs Linked to Host Responses and Virus Pathogenicity-Related KEGG Pathways Significant for Comorbidities.
32521790 2020. IGF-1 Deficiency Rescue and Intracellular Calcium Blockade Improves Survival and Corresponding Mechanisms in a Mouse Model of Acute Kidney Injury.
32522207 2020. COVID-19: viral-host interactome analyzed by network based-approach model to study pathogenesis of SARS-CoV-2 infection.
32526370 2020. What is the potential function of microRNAs as biomarkers and therapeutic targets in COVID-19?
32526950 2020. Host Gene Expression of Macrophages in Response to Feline Coronavirus Infection.
32529795 2020. Detection of viral SARS-CoV-2 genomes and histopathological changes in endomyocardial biopsies.
32544429 2020. Insights into SARS-CoV-2 genome, structure, evolution, pathogenesis and therapies: Structural genomics approach.
32545518 2020. Nrf2 Activator PB125((R)) as a Potential Therapeutic Agent against COVID-19.
32547891 2020. Computational analysis of microRNA-mediated interactions in SARS-CoV-2 infection.
32554149 2020. Aminoglycosides can be a better choice over macrolides in COVID-19 regimen: Plausible mechanism for repurposing strategy.
32559180 2020. COVID-19 infection alters kynurenine and fatty acid metabolism, correlating with IL-6 levels and renal status.
32561706 2020. Temporal profiling of plasma cytokines, chemokines and growth factors from mild, severe and fatal COVID-19 patients.
32563676 2020. Pathological Findings in the Testes of COVID-19 Patients: Clinical Implications.
32573711 2020. Platelet gene expression and function in patients with COVID-19.
32574283 2020. Methylation Pathways and SARS-CoV-2 Lung Infiltration and Cell Membrane-Virus Fusion Are Both Subject to Epigenetics.
32574504 2020. Metabolomics to Predict Antiviral Drug Efficacy in COVID-19.
32577056 2020. The Nrf2 Activator (DMF) and Covid-19: Is there a Possible Role?
32578378 2020. Nanopore Targeted Sequencing for the Accurate and Comprehensive Detection of SARS-CoV-2 and Other Respiratory Viruses.
32578831 2020. Human Leukocyte Transcriptional Response to SARS-CoV-2 Infection.
32581017 2020. Morphoproteomics and Etiopathogenic Features of Pulmonary COVID-19 with Therapeutic Implications: A Case Study.
32582303 2020. Neutrophils, Crucial, or Harmful Immune Cells Involved in Coronavirus Infection: A Bioinformatics Study.
32587093 2020. Inhibition of SARS-CoV-2 by type I and type III interferons.
32587961 2021. Transcriptogram analysis reveals relationship between viral titer and gene sets responses during Corona-virus infection.
32587963 2020. Single-cell transcriptomic analysis of SARS-CoV-2 reactive CD4 (+) T cells.
32591346 2020. Data, Reagents, Assays and Merits of Proteomics for SARS-CoV-2 Research and Testing.
32591762 2020. COVID-19 severity correlates with airway epithelium-immune cell interactions identified by single-cell analysis.
32595353 2020. Integration of transcriptomic profile of SARS-CoV-2 infected normal human bronchial epithelial cells with metabolic and protein-protein interaction networks.
32596474 2020. Evidence for host-dependent RNA editing in the transcriptome of SARS-CoV-2.
32597823 2020. AhR and IDO1 in pathogenesis of Covid-19 and the "Systemic AhR Activation Syndrome:" a translational review and therapeutic perspectives.
32599245 2020. Targeting hub genes and pathways of innate immune response in COVID-19: A network biology perspective.
32604797 2020. Data and Text Mining Help Identify Key Proteins Involved in the Molecular Mechanisms Shared by SARS-CoV-2 and HIV-1.
32606886 2020. Hypercytokinemia and Pathogen-Host Interaction in COVID-19.
32608016 2020. Is susceptibility to severe COVID-19 disease an inborn error of metabolism?
32610096 2020. Omics-Driven Systems Interrogation of Metabolic Dysregulation in COVID-19 Pathogenesis.
32611485 2020. Molecular Alterations Prompted by SARS-CoV-2 Infection: Induction of Hyaluronan, Glycosaminoglycan and Mucopolysaccharide Metabolism.
32615049 2021. The emerging role and significance of circular RNAs in viral infections and antiviral immune responses: possible implication as theranostic agents.
32615317 2020. Gene signatures of SARS-CoV/SARS-CoV-2-infected ferret lungs in short- and long-term models.
32617987 2021. Microstructure, pathophysiology, and potential therapeutics of COVID-19: A comprehensive review.
32619390 2020. Shotgun proteomics analysis of SARS-CoV-2-infected cells and how it can optimize whole viral particle antigen production for vaccines.
32619549 2020. Ultra-High-Throughput Clinical Proteomics Reveals Classifiers of COVID-19 Infection.
32628270 2020. Most chilblains observed during the COVID-19 outbreak occur in patients who are negative for COVID-19 on polymerase chain reaction and serology testing.
32629995 2020. Putative Roles for Peptidylarginine Deiminases in COVID-19.
32632085 2020. Marked T cell activation, senescence, exhaustion and skewing towards TH17 in patients with COVID-19 pneumonia.
32637948 2020. Genetic architecture of host proteins interacting with SARS-CoV-2.
32638509 2020. The interface between coronaviruses and host cell RNA biology: Novel potential insights for future therapeutic intervention.
32641214 2020. SARS-CoV-2 infection risk assessment in the endometrium: viral infection-related gene expression across the menstrual cycle.
32641482 2020. LY6E Restricts Entry of Human Coronaviruses, Including Currently Pandemic SARS-CoV-2.
32641705 2020. Single cell transcriptome revealed SARS-CoV-2 entry genes enriched in colon tissues and associated with coronavirus infection and cytokine production.
32642770 2020. Proteome-wide data analysis reveals tissue-specific network associated with SARS-CoV-2 infection.
32643596 2020. A review on histotechnology practices in COVID-19 pathology investigations.
32643603 2020. Generation of a Broadly Useful Model for COVID-19 Pathogenesis, Vaccination, and Treatment.
32645325 2020. The Global Phosphorylation Landscape of SARS-CoV-2 Infection.
32646047 2020. Protein Coding and Long Noncoding RNA (lncRNA) Transcriptional Landscape in SARS-CoV-2 Infected Bronchial Epithelial Cells Highlight a Role for Interferon and Inflammatory Response.
32651741 2020. Gene expression pattern differences in primary human pulmonary epithelial cells infected with MERS-CoV or SARS-CoV-2.
32657586 2020. Proteomics and Informatics for Understanding Phases and Identifying Biomarkers in COVID-19 Disease.
32661197 2020. The molecular virology of coronaviruses.
32663409 2020. Single-Cell RNA Expression Profiling of ACE2, the Receptor of SARS-CoV-2.
32665542 2020. Exploring the SARS-CoV-2 virus-host-drug interactome for drug repurposing.
32665645 2020. SARS-CoV-2 proteome microarray for global profiling of COVID-19 specific IgG and IgM responses.
32669265 2020. Discovery of M Protease Inhibitors Encoded by SARS-CoV-2.
32673562 2020. RNA-GPS Predicts SARS-CoV-2 RNA Residency to Host Mitochondria and Nucleolus.
32675206 2020. Gene expression and in situ protein profiling of candidate SARS-CoV-2 receptors in human airway epithelial cells and lung tissue.
32676594 2020. Unique transcriptional changes in coagulation cascade genes in SARS-CoV-2-infected lung epithelial cells: A potential factor in COVID-19 coagulopathies.
32676599 2020. Role of SARS-CoV-2 in altering the RNA binding protein and miRNA directed post-transcriptional regulatory networks in humans.
32676602 2020. Severely ill COVID-19 patients display augmented functional properties in SARS-CoV-2-reactive CD8 + T cells.
32679150 2020. Matrix metallopeptidase 9 as a host protein target of chloroquine and melatonin for immunoregulation in COVID-19: A network-based meta-analysis.
32680882 2020. Structural basis for translational shutdown and immune evasion by the Nsp1 protein of SARS-CoV-2.
32686577 2021. Epigenetic mechanisms regulating COVID-19 infection.
32686937 2020. SARS-CoV-2-Encoded Proteome and Human Genetics: From Interaction-Based to Ribosomal Biology Impact on Disease and Risk Processes.
32686993 2021. Network analysis, sequence and structure dynamics of key proteins of coronavirus and human host, and molecular docking of selected phytochemicals of nine medicinal plants.
32687176 2021. Evidence for Strong Mutation Bias toward, and Selection against, U Content in SARS-CoV-2: Implications for Vaccine Design.
32691695 2020. Dysregulation in Akt/mTOR/HIF-1 signaling identified by proteo-transcriptomics of SARS-CoV-2 infected cells.
32694793 2020. A metabolic handbook for the COVID-19 pandemic.
32695025 2020. Regulatory Cross Talk Between SARS-CoV-2 Receptor Binding and Replication Machinery in the Human Host.
32698440 2020. Tiotropium is Predicted to be a Promising Drug for COVID-19 Through Transcriptome-Based Comprehensive Molecular Pathway Analysis.
32699064 2020. Viral subversion of nonsense-mediated mRNA decay.
32699094 2020. Type I and Type III Interferons Restrict SARS-CoV-2 Infection of Human Airway Epithelial Cultures.
32699849 2020. Comparative multiplexed interactomics of SARS-CoV-2 and homologous coronavirus non-structural proteins identifies unique and shared host-cell dependencies.
32702714 2020. Interactome of SARS-CoV-2 / nCoV19 modulated host proteins with computationally predicted PPIs.
32702730 2020. In silico Drug Repurposing to combat COVID-19 based on Pharmacogenomics of Patient Transcriptomic Data.
32702734 2020. Potentially repurposable drugs for COVID-19 identified from SARS-CoV-2 Host Protein Interactome.
32707288 2020. Deciphering the co-adaptation of codon usage between respiratory coronaviruses and their human host uncovers candidate therapeutics for COVID-19.
32712315 2020. Decoding the proteome of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) for cell-penetrating peptides involved in pathogenesis or applicable as drug delivery vectors.
32712910 2021. Understanding COVID-19 via comparative analysis of dark proteomes of SARS-CoV-2, human SARS and bat SARS-like coronaviruses.
32714115 2020. Integrative Network Biology Framework Elucidates Molecular Mechanisms of SARS-CoV-2 Pathogenesis.
32714116 2020. Activation of the SARS-CoV-2 Receptor Ace2 by Cytokines Through Pan JAK-STAT Enhancers.
32720461 2020. An overview of the immune mechanisms of viral myocarditis.
32723359 2020. Characterisation of the transcriptome and proteome of SARS-CoV-2 reveals a cell passage induced in-frame deletion of the furin-like cleavage site from the spike glycoprotein.
32725480 2021. Prediction of the Receptorome for the Human-Infecting Virome.
32728199 2020. SARS-CoV-2 Orf9b suppresses type I interferon responses by targeting TOM70.
32735892 2020. Network perturbation analysis in human bronchial epithelial cells following SARS-CoV2 infection.
32736569 2020. A modular framework for the development of targeted Covid-19 blood transcript profiling panels.
32739507 2020. From Mutation Signature to Molecular Mechanism in the RNA World: A Case of SARS-CoV-2.
32741461 2020. Endometrial susceptibility to SARS CoV-2: explained by gene expression across the menstrual cycle?
32742242 2020. Single-Cell Transcriptomic Analysis of SARS-CoV-2 Reactive CD4 (+) T Cells.
32744436 2020. Single-cell RNA sequencing analysis of human kidney reveals the presence of ACE2 receptor: A potential pathway of COVID-19 infection.
32750889 2021. AGTR2, One Possible Novel Key Gene for the Entry of SARS-CoV-2 Into Human Cells.
32754004 2020. Expansion of Single Cell Transcriptomics Data of SARS-CoV Infection in Human Bronchial Epithelial Cells to COVID-19.
32754056 2020. SARS-CoV-2 Molecular Network Structure.
32758273 2020. Management of epigenomic networks entailed in coronavirus infections and COVID-19.
32763951 2020. A Comprehensive, Flexible Collection of SARS-CoV-2 Coding Regions.
32765592 2020. Epigenetic Regulator miRNA Pattern Differences Among SARS-CoV, SARS-CoV-2, and SARS-CoV-2 World-Wide Isolates Delineated the Mystery Behind the Epic Pathogenicity and Distinct Clinical Characteristics of Pandemic COVID-19.
32766585 2020. Multiomic Immunophenotyping of COVID-19 Patients Reveals Early Infection Trajectories.
32766588 2020. Direct exposure to SARS-CoV-2 and cigarette smoke increases infection severity and alters the stem cell-derived airway repair response.
32766608 2020. Cell-Free DNA in Blood Reveals Significant Cell, Tissue and Organ Specific injury and Predicts COVID-19 Severity.
32771622 2020. Global multi-omics and systems pharmacological strategy unravel the multi-targeted therapeutic potential of natural bioactive molecules against COVID-19: An in silico approach.
32773100 2020. NK cells: A double edge sword against SARS-CoV-2.
32773420 2020. Transcriptome & viral growth analysis of SARS-CoV-2-infected Vero CCL-81 cells.
32775582 2020. Dataset for homologous proteins in Drosophila melanogaster for SARS-CoV-2/human interactome.
32778874 2021. Pathogenetic profiling of COVID-19 and SARS-like viruses.
32779784 2021. Mutational spectra of SARS-CoV-2 orf1ab polyprotein and signature mutations in the United States of America.
32782358 2020. The role of IgG Fc receptors in antibody-dependent enhancement.
32783921 2020. Single-Cell Sequencing of Peripheral Mononuclear Cells Reveals Distinct Immune Response Landscapes of COVID-19 and Influenza Patients.
32786691 2020. Serum Proteomics in COVID-19 Patients: Altered Coagulation and Complement Status as a Function of IL-6 Level.
32788344 2020. Serum Protein Profiling Reveals a Landscape of Inflammation and Immune Signaling in Early-stage COVID-19 Infection.
32788748 2020. Single-cell landscape of immunological responses in patients with COVID-19.
32790362 2020. Shell Disorder Analysis Suggests That Pangolins Offered a Window for a Silent Spread of an Attenuated SARS-CoV-2 Precursor among Humans.
32790936 2020. Nicotine and the nicotinic cholinergic system in COVID-19.
32793903 2020. IFN signaling and neutrophil degranulation transcriptional signatures are induced during SARS-CoV-2 infection.
32794723 2020. Biological Rationale for the Repurposing of BCG Vaccine against SARS-CoV-2.
32799423 2020. Effect of Common Medications on the Expression of SARS-CoV-2 Entry Receptors in Kidney Tissue.
32805023 2021. Mechanistic insights into SARS-CoV-2 epidemic via revealing the features of SARS-CoV-2 coding proteins and host responses upon its infection.
32809918 2020. Oxytocin's anti-inflammatory and proimmune functions in COVID-19: a transcriptomic signature-based approach.
32810438 2020. Severe COVID-19 Is Marked by a Dysregulated Myeloid Cell Compartment.
32810597 2021. Identification of Transcription Factors Regulating SARS-CoV-2 Entry Genes in the Intestine.
32812012 2020. Peripheral immunophenotypes in children with multisystem inflammatory syndrome associated with SARS-CoV-2 infection.
32814446 2021. COVID-19: fighting the invisible enemy with microRNAs.
32828489 2020. Epigenetic susceptibility to severe respiratory viral infections and its therapeutic implications: a narrative review.
32833213 2020. Proximity Labeling for the Identification of Coronavirus-Host Protein Interactions.
32833216 2020. Ribopuromycylation in Coronavirus-Infected Cells.
32835074 2020. Identification and classification of differentially expressed genes reveal potential molecular signature associated with SARS-CoV-2 infection in lung adenocarcinomal cells.
32835133 2020. Phylogenomic proximity and comparative proteomic analysis of SARS-CoV-2.
32838054 2021. Subcellular hot spots of GPCR signaling promote vascular inflammation.
32838362 2021. Virus-Host Interactome and Proteomic Survey Reveal Potential Virulence Factors Influencing SARS-CoV-2 Pathogenesis.
32839745 2020. miRNA target prediction might explain the reduced transmission of SARS-CoV-2 in Jordan, Middle East.
32839770 2020. SARS-CoV-2 ORF9c Is a Membrane-Associated Protein that Suppresses Antiviral Responses in Cells.
32843695 2020. Immunoinformatic identification of B cell and T cell epitopes in the SARS-CoV-2 proteome.
32851697 2021. Single-cell RNA expression profiling of SARS-CoV-2-related ACE2 and TMPRSS2 in human trophectoderm and placenta.
32856216 2020. Roles of MicroRNA-122 in Cardiovascular Fibrosis and Related Diseases.
32857620 2020. Azithromycin Downregulates Gene Expression of IL-1beta and Pathways Involving TMPRSS2 and TMPRSS11D Required by SARS-CoV-2.
32867123 2020. Using All-Atom Potentials to Refine RNA Structure Predictions of SARS-CoV-2 Stem Loops.
32869031 2020. Elucidation of remdesivir cytotoxicity pathways through genome-wide CRISPR-Cas9 screening and transcriptomics.
32870373 2021. Why do SARS-CoV-2 NSPs rush to the ER?
32872332 2020. Delta9-Tetrahydrocannabinol Prevents Mortality from Acute Respiratory Distress Syndrome through the Induction of Apoptosis in Immune Cells, Leading to Cytokine Storm Suppression.
32872802 2020. Fractional diffusion on the human proteome as an alternative to the multi-organ damage of SARS-CoV-2.
32873700 2020. Gene of the month: TMPRSS2 (transmembrane serine protease 2).
32875809 2020. Potential use of noncoding RNAs and innovative therapeutic strategies to target the 5'UTR of SARS-CoV-2.
32878480 2020. Elevated FiO2 increases SARS-CoV-2 co-receptor expression in respiratory tract epithelium.
32880453 2020. Mass Spectrometry Techniques in Emerging Pathogens Studies: COVID-19 Perspectives.
32880920 2020. Transcriptomic analyses suggest that mucopolysaccharidosis patients may be less susceptible to COVID-19.
32883081 2020. "A Chain Only as Strong as Its Weakest Link": An Up-to-Date Literature Review on the Bidirectional Interaction of Pulmonary Fibrosis and COVID-19.
32883368 2020. A protein interaction map identifies existing drugs targeting SARS-CoV-2.
32883951 2020. COVID-19-activated SREBP2 disturbs cholesterol biosynthesis and leads to cytokine storm.
32894568 2020. Three critical clinicobiological phases of the human SARS-associated coronavirus infections.
32895641 2020. Integrative Network Biology Framework Elucidates Molecular Mechanisms of SARS-CoV-2 Pathogenesis.
32898168 2020. In vivo antiviral host transcriptional response to SARS-CoV-2 by viral load, sex, and age.
32902237 2020. Evaluation of Routine Blood Tests for Diagnosis of Suspected Coronavirus Disease 2019.
32903570 2020. RNA-Seq-Based Whole Transcriptome Analysis of IPEC-J2 Cells During Swine Acute Diarrhea Syndrome Coronavirus Infection.
32908980 2020. Induction of a regulatory myeloid program in bacterial sepsis and severe COVID-19.
32909006 2020. Cytotoxic lymphocytes are dysregulated in multisystem inflammatory syndrome in children.
32913009 2020. Antiviral Activity of Type I, II, and III Interferons Counterbalances ACE2 Inducibility and Restricts SARS-CoV-2.
32913304 2021. Single-cell transcriptomic atlas of primate cardiopulmonary aging.
32914632 2020. Computational Immune Proteomics Approach to Target COVID-19.
32918943 2020. The role of host genetics in susceptibility to severe viral infections in humans and insights into host genetics of severe COVID-19: A systematic review.
32920121 2020. SARS-CoV-2 transcriptome analysis and molecular cataloguing of immunodominant epitopes for multi-epitope based vaccine design.
32924178 2021. The future is now? Clinical and translational aspects of "Omics" technologies.
32924263 2020. Identification of Hub genes associated with infection of three lung cell lines by SARS-CoV-2 with integrated bioinformatics analysis.
32927621 2020. Mass Spectrometry and Structural Biology Techniques in the Studies on the Coronavirus-Receptor Interaction.
32929000 2020. RNA Drugs and RNA Targets for Small Molecules: Principles, Progress, and Challenges.
32929138 2020. Analysis of the SARS-CoV-2 spike protein glycan shield reveals implications for immune recognition.
32931291 2020. Generation of SARS-CoV-2 S1 Spike Glycoprotein Putative Antigenic Epitopes in Vitro by Intracellular Aminopeptidases.
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33501381 2020. Fostering global data sharing: highlighting the recommendations of the Research Data Alliance COVID-19 working group.
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33519902 2020. Detecting the Multiomics Signatures of Factor-Specific Inflammatory Effects on Airway Smooth Muscles.
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33520952 2020. Evolutionarily Conserved Long Non-coding RNA Regulates Gene Expression in Cytokine Storm During COVID-19.
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33537060 2020. The Dynamic Expression of Potential Mediators of Severe Acute Respiratory Syndrome Coronavirus 2 Cellular Entry in Fetal, Neonatal, and Adult Rhesus Monkeys.
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33547084 2021. Nsp1 protein of SARS-CoV-2 disrupts the mRNA export machinery to inhibit host gene expression.
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33564755 2021. miR-24 targets SARS-CoV-2 co-factor Neuropilin-1 in human brain microvascular endothelial cells: Insights for COVID-19 neurological manifestations.
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33564978 2021. Single-cell transcriptomes of peripheral blood cells indicate and elucidate severity of COVID-19.
33564990 2021. Novel Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV2) and Other Coronaviruses: A Genome-wide Comparative Annotation and Analysis.
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33615195 2021. Structural insight reveals SARS-CoV-2 ORF7a as an immunomodulating factor for human CD14(+) monocytes.
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33618659 2021. Effects of Cell Proteostasis Network on the Survival of SARS-CoV-2.
33619245 2021. Genome and epigenome editing identify CCR9 and SLC6A20 as target genes at the 3p21.31 locus associated with severe COVID-19.
33619478 2021. The Host Interactome of Spike Expands the Tropism of SARS-CoV-2.
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33631640 2021. Artificial Intelligence-Based Prediction of Covid-19 Severity on the Results of Protein Profiling.
33635335 2021. A neutrophil activation signature predicts critical illness and mortality in COVID-19.
33635931 2021. Inhibition of anti-viral stress granule formation by coronavirus endoribonuclease nsp15 ensures efficient virus replication.
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33645482 2021. Predicted SARS-CoV-2 miRNAs Associated with Epigenetic Viral Pathogenesis and the Detection of New Possible Drugs for Covid-19.
33647885 2021. The networks of m(6)A-SARS-CoV-2 related genes and immune infiltration patterns in idiopathic pulmonary fibrosis.
33648648 2021. The faecal metabolome in COVID-19 patients is altered and associated with clinical features and gut microbes.
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33651717 2021. Cell-free DNA maps COVID-19 tissue injury and risk of death and can cause tissue injury.
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33655247 2021. A single-cell and spatial atlas of autopsy tissues reveals pathology and cellular targets of SARS-CoV-2.
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33674719 2021. IFN signaling and neutrophil degranulation transcriptional signatures are induced during SARS-CoV-2 infection.
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33678150 2021. Integrated gut virome and bacteriome dynamics in COVID-19 patients.
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33683626 2021. Divulging the Intricacies of Crosstalk Between NF-Kb and Nrf2-Keap1 Pathway in Neurological Complications of COVID-19.
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33685230 2021. An immune epigenetic insight to COVID-19 infection.
33685349 2021. SARS-CoV-2 infection in nonhuman primates alters the composition and functional activity of the gut microbiota.
33688586 2021. In silico analysis of altered expression of long non-coding RNA in SARS-CoV-2 infected cells and their possible regulation by STAT1, STAT3 and interferon regulatory factors.
33688631 2020. Urine proteome of COVID-19 patients.
33688643 2021. Published Anti-SARS-CoV-2 In Vitro Hits Share Common Mechanisms of Action that Synergize with Antivirals.
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33691144 2021. Single-cell RNA sequencing reveals the sustained immune cell dysfunction in the pathogenesis of sepsis secondary to bacterial pneumonia.
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33691178 2021. First description of natural concomitant infection of avian nephritis virus and infectious bronchitis virus reveals exacerbated inflammatory response and renal damage in broiler chicks.
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33693030 2021. Circulating Exosomes Are Strongly Involved in SARS-CoV-2 Infection.
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33705542 2021. Human cardiosphere-derived stromal cells exposed to SARS-CoV-2 evolve into hyper-inflammatory/pro-fibrotic phenotype and produce infective viral particles depending on the levels of ACE2 receptor expression.
33707411 2021. Metabolomic analyses of COVID-19 patients unravel stage-dependent and prognostic biomarkers.
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33719350 2021. A Negative Feedback Model to Explain Regulation of SARS-CoV-2 Replication and Transcription.
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33732659 2021. Exogenous Coronavirus Interacts With Endogenous Retrotransposon in Human Cells.
33737124 2021. Epidemiological transcriptomic data supports BCG protection in viral diseases including COVID-19.
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33758858 2021. Systemic Tissue and Cellular Disruption from SARS-CoV-2 Infection revealed in COVID-19 Autopsies and Spatial Omics Tissue Maps.
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33996501 2021. Design of advanced siRNA therapeutics for the treatment of COVID-19.
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33997298 2021. -------A type I IFN, prothrombotic hyperinflammatory neutrophil signature is distinct for COVID-19 ARDS--.
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35052382 2021. Detection of A-to-I RNA Editing in SARS-COV-2.
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35059135 2021. Syncytin, envelope protein of human endogenous retrovirus (HERV): no longer 'fossil' in human genome.
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35072167 2021. Host methylation predicts SARS-CoV-2 infection and clinical outcome.
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35082790 2021. The Potential Mechanism of Cancer Patients Appearing More Vulnerable to SARS-CoV-2 and Poor Outcomes: A Pan-Cancer Bioinformatics Analysis.
35083167 2021. SARS-CoV-2 Spike Antagonizes Innate Antiviral Immunity by Targeting Interferon Regulatory Factor 3.
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35091986 2022. The Trend of CRISPR-Based Technologies in COVID-19 Disease: Beyond Genome Editing.
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35095855 2021. Pulmonary Mesenchymal Stem Cells in Mild Cases of COVID-19 Are Dedicated to Proliferation; In Severe Cases, They Control Inflammation, Make Cell Dispersion, and Tissue Regeneration.
35095875 2021. Monolaurin Confers a Protective Effect Against Porcine Epidemic Diarrhea Virus Infection in Piglets by Regulating the Interferon Pathway.
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35095900 2021. Metabolic and Immune Markers for Precise Monitoring of COVID-19 Severity and Treatment.
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35106136 2021. Toxin-like peptides in plasma, urine and faecal samples from COVID-19 patients.
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35110370 2022. Proteomic landscape of SARS-CoV-2- and MERS-CoV-infected primary human renal epithelial cells.
35111156 2021. Exosomes Recovered From the Plasma of COVID-19 Patients Expose SARS-CoV-2 Spike-Derived Fragments and Contribute to the Adaptive Immune Response.
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35118477 2022. T cell response to intact SARS-CoV-2 includes coronavirus cross-reactive and variant-specific components.
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35124429 2022. SARS-CoV-2 RNA elements share human sequence identity and upregulate hyaluronan via NamiRNA-enhancer network.
35126380 2021. Swine Enteric Coronaviruses (PEDV, TGEV, and PDCoV) Induce Divergent Interferon-Stimulated Gene Responses and Antigen Presentation in Porcine Intestinal Enteroids.
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35127841 2021. Molecular Mechanisms of Cardiac Injury Associated With Myocardial SARS-CoV-2 Infection.
35128085 2022. Common genetic aspects between COVID-19 and sarcoidosis: A network-based approach using gene expression data.
35128501 2022. Antiviral metabolite 3'-deoxy-3',4'-didehydro-cytidine is detectable in serum and identifies acute viral infections including COVID-19.
35131599 2022. Association of gut-related metabolites with respiratory symptoms in COVID-19: A proof-of-concept study.
35131898 2022. Differential interferon-alpha subtype induced immune signatures are associated with suppression of SARS-CoV-2 infection.
35132419 2022. Human Cardiac Organoids to Model COVID-19 Cytokine Storm Induced Cardiac Injuries.
35132424 2022. Blood transcriptomes of SARS-CoV-2 infected kidney transplant recipients demonstrate immune insufficiency.
35133633 2022. Clinical and Laboratory Approach to Diagnose COVID-19 Using Machine Learning.
35133846 2022. Metabolic Snapshot of Plasma Samples Reveals New Pathways Implicated in SARS-CoV-2 Pathogenesis.
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35141213 2021. A Novel Prognostic Signature for Survival Prediction and Immune Implication Based on SARS-CoV-2-Related Genes in Kidney Renal Clear Cell Carcinoma.
35141230 2021. Cancer and COVID-19 Susceptibility and Severity: A Two-Sample Mendelian Randomization and Bioinformatic Analysis.
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35148261 2022. Mixed-weight Neural Bagging for Detecting m6A Modifications in SARS-CoV-2 RNA Sequencing.
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35153822 2021. The Landscape of Aminoacyl-tRNA Synthetases Involved in Severe Acute Respiratory Syndrome Coronavirus 2 Infection.
35154070 2021. T-Cell Repertoire Characteristics of Asymptomatic and Re-Detectable Positive COVID-19 Patients.
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35157021 2022. Multi-Level Attention Graph Neural Network Based on Co-expression Gene Modules for Disease Diagnosis and Prognosis.
35159296 2022. Competitive Endogenous RNA Network Activates Host Immune Response in SARS-CoV-2-, panH1N1 (A/California/07/2009)-, and H7N9 (A/Shanghai/1/2013)-Infected Cells.
35163833 2022. AKR1B10, One of the Triggers of Cytokine Storm in SARS-CoV2 Severe Acute Respiratory Syndrome.
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35164548 2022. Genome-Wide Characterization of SARS-CoV-2 Cytopathogenic Proteins in the Search of Antiviral Targets.
35169146 2022. Cell specific peripheral immune responses predict survival in critical COVID-19 patients.
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35171039 2022. Endothelial inflammation and dysfunction in COVID-19.
35172892 2022. Integrating single-cell sequencing data with GWAS summary statistics reveals CD16+monocytes and memory CD8+T cells involved in severe COVID-19.
35173714 2022. All-Trans Retinoic Acid Attenuates Transmissible Gastroenteritis Virus-Induced Inflammation in IPEC-J2 Cells via Suppressing the RLRs/NF-kappaB Signaling Pathway.
35173764 2021. KeyPathwayMineR: De Novo Pathway Enrichment in the R Ecosystem.
35177862 2022. Immunopathological signatures in multisystem inflammatory syndrome in children and pediatric COVID-19.
35178029 2021. Luteolin Potentially Treating Prostate Cancer and COVID-19 Analyzed by the Bioinformatics Approach: Clinical Findings and Drug Targets.
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35180397 2022. A human pluripotent stem cell-based model of SARS-CoV-2 infection reveals an ACE2-independent inflammatory activation of vascular endothelial cells through TLR4.
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35181735 2022. Immune transcriptome analysis of COVID-19 patients infected with SARS-CoV-2 variants carrying the E484K escape mutation identifies a distinct gene module.
35185603 2021. COVID-19 and Mitochondrial Non-Coding RNAs: New Insights From Published Data.
35185890 2022. Immune Response Is Key to Genetic Mechanisms of SARS-CoV-2 Infection With Psychiatric Disorders Based on Differential Gene Expression Pattern Analysis.
35186014 2021. Single-Cell Differential Network Analysis with Sparse Bayesian Factor Models.
35186784 2021. Transcriptome Analysis of Peripheral Blood Mononuclear Cells in SARS-CoV-2 Naive and Recovered Individuals Vaccinated With Inactivated Vaccine.
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35203278 2022. The ACE2 Receptor for Coronavirus Entry Is Localized at Apical Cell-Cell Junctions of Epithelial Cells.
35204689 2022. Looking at COVID-19 from a Systems Biology Perspective.
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35205390 2022. Conserved MicroRNAs in Human Nasopharynx Tissue Samples from Swabs Are Differentially Expressed in Response to SARS-CoV-2.
35205926 2022. Molecular Profiling Reveals Characteristic and Decisive Signatures in Patients after Allogeneic Stem Cell Transplantation Suffering from Invasive Pulmonary Aspergillosis.
35208734 2022. Prion-like Domains in Spike Protein of SARS-CoV-2 Differ across Its Variants and Enable Changes in Affinity to ACE2.
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35215915 2022. Secondary Structure of Subgenomic RNA M of SARS-CoV-2.
35215921 2022. Carbohydrate Ligands for COVID-19 Spike Proteins.
35215969 2022. Unlike Chloroquine, Mefloquine Inhibits SARS-CoV-2 Infection in Physiologically Relevant Cells.
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35224468 2022. Multi-omics evaluation of SARS-CoV-2 infected mouse lungs reveals dynamics of host responses.
35226074 2022. CRESSP: a comprehensive pipeline for prediction of immunopathogenic SARS-CoV-2 epitopes using structural properties of proteins.
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35229157 2022. Unheeded SARS-CoV-2 proteins? A deep look into negative-sense RNA.
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35233559 2021. Defense of COVID-19 by Human Organoids.
35233572 2022. Targeted Down Regulation Of Core Mitochondrial Genes During SARS-CoV-2 Infection.
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35235083 2022. Identification of the Hub Genes and the Signaling Pathways in Human iPSC-Cardiomyocytes Infected by SARS-CoV-2.
35237749 2022. A master autoantigen-ome links alternative splicing, female predilection, and COVID-19 to autoimmune diseases.
35239653 2022. Proteome-wide Mendelian randomization identifies causal links between blood proteins and severe COVID-19.
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35252121 2022. Editorial: Protein Glycosylation-Advances in Identification, Characterization and Biological Function Elucidation Using Mass Spectrometry.
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35258762 2022. Integrated analysis of gut microbiome and host immune responses in COVID-19.
35261621 2022. Post-treatment with propofol inhibits inflammatory response in LPS-induced alveolar type II epithelial cells.
35265835 2022. Feature selection for kernel methods in systems biology.
35269470 2022. Severe COVID-19 Shares a Common Neutrophil Activation Signature with Other Acute Inflammatory States.
35272104 2022. Stratification of COVID-19 patients based on quantitative immune-related gene expression in whole blood.
35277538 2022. Computational identification of host genomic biomarkers highlighting their functions, pathways and regulators that influence SARS-CoV-2 infections and drug repurposing.
35281785 2022. SARS-CoV-2 triggered oxidative stress and abnormal energy metabolism in gut microbiota.
35282650 2022. The Key Genes Underlying Pathophysiology Correlation Between the Acute Myocardial Infarction and COVID-19.
35284643 2022. An experimental in silico study on COVID-19: Response of neutrophil-related genes to antibiotics.
35284913 2022. Th1, Th2 and Th17 inflammatory pathways synergistically predict cardiometabolic protein expression in serum of COVID-19 patients.
35288537 2022. Plasma proteomic and metabolomic characterization of COVID-19 survivors 6 months after discharge.
35288942 2022. When cyclin-dependent kinases meet viral infections, including SARS-CoV-2.
35290573 2022. A urinary proteomic landscape of COVID-19 progression identifies signaling pathways and therapeutic options.
35293857 2022. SARS-CoV-2 Nsp14 mediates the effects of viral infection on the host cell transcriptome.
35294846 2022. Detection techniques for epitranscriptomic marks.
35296346 2022. Autoimmunity is a hallmark of post-COVID syndrome.
35301508 2022. Type I interferon transcriptional network regulates expression of coinhibitory receptors in human T cells.
35301621 2022. Comparative trachea transcriptome analysis in SPF broiler chickens infected with avian infectious bronchitis and avian influenza viruses.
35301654 2022. Differentially expressed plasmatic microRNAs in Brazilian patients with Coronavirus disease 2019 (COVID-19): preliminary results.
35303126 2022. Identification of G-quadruplex DNA sequences in SARS-CoV2.
35305698 2022. The molecular mechanism of SARS-CoV-2 evading host antiviral innate immunity.
35309096 2021. Multi-Omics-Guided Discovery of Omicsynins Produced by Streptomyces sp. 1647: Pseudo-Tetrapeptides Active Against Influenza A Viruses and Coronavirus HCoV-229E.
35309299 2022. Signaling Through FcgammaRIIA and the C5a-C5aR Pathway Mediate Platelet Hyperactivation in COVID-19.
35309488 2022. Semen Proteomics of COVID-19 Convalescent Men Reveals Disruption of Key Biological Pathways Relevant to Male Reproductive Function.
35310032 2022. Integrating Metabolomics and Network Pharmacology to Explore the Protective Effect of Ginsenoside Re against Radiotherapy Injury in Mice.
35310073 2022. SARS-CoV-2 proteome microarray for COVID-19 patient sera profiling.
35311586 2022. Profiling of SARS-CoV-2 Subgenomic RNAs in Clinical Specimens.
35311624 2022. DNA methylation profiles in pneumonia patients reflect changes in cell types and pneumonia severity.
35313583 2022. Dynamic single-cell RNA sequencing reveals BCG vaccination curtails SARS-CoV-2 induced disease severity and lung inflammation.
35313584 2022. Genetic control of the dynamic transcriptional response to immune stimuli and glucocorticoids at single cell resolution.
35313658 2022. The accessible promoter-mediated supplementary effect of host factors provides new insight into the tropism of SARS-CoV-2.
35314694 2022. Genetic alteration of human MYH6 is mimicked by SARS-CoV-2 polyprotein: mapping viral variants of cardiac interest.
35317263 2022. Using bioinformatics and systems biology to discover common pathogenetic processes between sarcoidosis and COVID-19.
35318325 2022. Integrative transcriptomic, evolutionary, and causal inference framework for region-level analysis: Application to COVID-19.
35318674 2022. SARS-CoV-2, SARS-CoV, and MERS-CoV encode circular RNAs of spliceosome-independent origin.
35319744 2022. Late Complications of COVID-19: A Morphologic, Imaging, and Droplet Digital Polymerase Chain Reaction Study of Lung Tissue.
35320721 2022. Restriction factor screening identifies RABGAP1L-mediated disruption of endocytosis as a host antiviral defense.
35320939 2022. Aorta in Pathologies May Function as an Immune Organ by Upregulating Secretomes for Immune and Vascular Cell Activation, Differentiation and Trans-Differentiation-Early Secretomes may Serve as Drivers for Trained Immunity.
35322240 2022. Allelic imbalance of HLA-B expression in human lung cells infected with coronavirus and other respiratory viruses.
35326463 2022. Multi-Design Differential Expression Profiling of COVID-19 Lung Autopsy Specimens Reveals Significantly Deregulated Inflammatory Pathways and SFTPC Impaired Transcription.
35328087 2022. Identification of Genetic Risk Factors of Severe COVID-19 Using Extensive Phenotypic Data: A Proof-of-Concept Study in a Cohort of Russian Patients.
35328409 2022. SARS-CoV-2 Membrane Protein: From Genomic Data to Structural New Insights.
35331159 2022. Regulation of SARS CoV-2 host factors in the kidney and heart in rats with 5/6 nephrectomy-effects of salt, ARB, DPP4 inhibitor and SGLT2 blocker.
35332098 2022. Global mapping of RNA homodimers in living cells.
35336922 2022. Multiorgan and Vascular Tropism of SARS-CoV-2.
35336960 2022. Differential Peripheral Blood Glycoprotein Profiles in Symptomatic and Asymptomatic COVID-19.
35337019 2022. A BioID-Derived Proximity Interactome for SARS-CoV-2 Proteins.
35339845 2022. Integration of omics data to generate and analyse COVID-19 specific genome-scale metabolic models.
35340030 2022. Mast cells in lung damage of COVID-19 autopsies: A descriptive study.
35342878 2022. Identified human breast milk compositions effectively inhibit SARS-CoV-2 and variants infection and replication.
35343064 2022. RNA-protein interactomes as invaluable resources to study RNA viruses: Insights from SARS CoV-2 studies.
35343384 2022. Transcriptomic analysis of the innate immune signatures of a SARS-CoV-2 protein subunit vaccine ZF2001 and an mRNA vaccine RRV.
35350199 2022. Autoantibody discovery across monogenic, acquired, and COVID19-associated autoimmunity with scalable PhIP-Seq.
35350779 2022. Metabolic Landscape of Bronchoalveolar Lavage Fluid in Coronavirus Disease 2019 at Single Cell Resolution.
35351411 2022. Differences and similarities in endothelial and angiogenic profiles of preeclampsia and COVID-19 in pregnancy.
35354968 2022. SARS-CoV-2 pathogenesis.
35363626 2022. Patterns of Inflammatory Cell Infiltration and Expression of STAT6 in the Lungs of Patients With COVID-19: An Autopsy Study.
35364615 2022. Autoantibodies in COVID-19 correlate with antiviral humoral responses and distinct immune signatures.
35369457 2022. Inflammatory Profiles of Tracheal Biopsies From SARS-CoV-2 Patients.
35371005 2022. Comparison of Lung-Homing Receptor Expression and Activation Profiles on NK Cell and T Cell Subsets in COVID-19 and Influenza.
35372520 2022. Host Cell Glycocalyx Remodeling Reveals SARS-CoV-2 Spike Protein Glycomic Binding Sites.
35373054 2021. COVID-19-associated Nephropathy Includes Tubular Necrosis and Capillary Congestion, with Evidence of SARS-CoV-2 in the Nephron.
35373282 2022. Vive la Resistance: T-cell Immunity in the Protection against SARS-CoV-2 Infection.
35379171 2022. Predicted coronavirus Nsp5 protease cleavage sites in the human proteome.
35379747 2022. Characterization of Altered Gene Expression and Histone Methylation in Peripheral Blood Mononuclear Cells Regulating Inflammation in COVID-19 Patients.
35380990 2022. Functional reprogramming of monocytes in patients with acute and convalescent severe COVID-19.
35381016 2022. Detection of SARS-CoV-2 infection by microRNA profiling of the upper respiratory tract.
35386719 2022. Causal Association and Shared Genetics Between Asthma and COVID-19.
35391730 2022. Inflammatory Bowel Disease and COVID-19: How Microbiomics and Metabolomics Depict Two Sides of the Same Coin.
35392323 2022. SARS-CoV-2 Interaction with Human DNA Methyl Transferase 1: A Potential Risk for Increasing the Incidence of Later Chronic Diseases in the Survived Patients.
35393464 2022. Host-pathogen dynamics in longitudinal clinical specimens from patients with COVID-19.
35394619 2022. Single-Cell Transcriptome Analysis Reveals the Role of Pancreatic Secretome in COVID-19 Associated Multi-organ Dysfunctions.
35395058 2022. Ad26.COV2.S prevents upregulation of SARS-CoV-2 induced pathways of inflammation and thrombosis in hamsters and rhesus macaques.
35397534 2022. The serum of COVID-19 asymptomatic patients up-regulates proteins related to endothelial dysfunction and viral response in circulating angiogenic cells ex-vivo.
35399374 2022. Unique peptide signatures of SARS-ComicronV-2 virus against human proteome reveal variants' immune escape and infectiveness.
35401515 2022. Differential Transcriptomics Analysis of IPEC-J2 Cells Single or Coinfected With Porcine Epidemic Diarrhea Virus and Transmissible Gastroenteritis Virus.
35401544 2022. Preclinical Studies on Convalescent Human Immune Plasma-Derived Exosome: Omics and Antiviral Properties to SARS-CoV-2.
35401574 2022. An Autoantigen Atlas From Human Lung HFL1 Cells Offers Clues to Neurological and Diverse Autoimmune Manifestations of COVID-19.
35402570 2022. In silico Drug Screening Approach Using L1000-Based Connectivity Map and Its Application to COVID-19.
35405523 2022. Cardiovascular signatures of COVID-19 predict mortality and identify barrier stabilizing therapies.
35406806 2022. Plasma Metabolomic Alterations Induced by COVID-19 Vaccination Reveal Putative Biomarkers Reflecting the Immune Response.
35410379 2022. Expanded COVID-19 phenotype definitions reveal distinct patterns of genetic association and protective effects.
35410380 2022. Understanding COVID-19 through genome-wide association studies.
35412852 2022. SARS-CoV-2 spike protein-induced cell fusion activates the cGAS-STING pathway and the interferon response.
35416291 2022. Natural killer cell-mediated ADCC in SARS-CoV-2-infected individuals and vaccine recipients.
35416308 2022. A pyrosequencing protocol for rapid identification of SARS-CoV-2 variants.
35419822 2022. Anti-IFN-alpha/-omega neutralizing antibodies from COVID-19 patients correlate with downregulation of IFN response and laboratory biomarkers of disease severity.
35421082 2022. Abnormal global alternative RNA splicing in COVID-19 patients.
35421120 2022. Dysregulation of the leukocyte signaling landscape during acute COVID-19.
35421970 2022. Co-expression analysis to identify key modules and hub genes associated with COVID-19 in platelets.
35422810 2022. Alterations of Urinary Microbial Metabolites and Immune Indexes Linked With COVID-19 Infection and Prognosis.
35422859 2022. Combination of Enrichment Using Gene Ontology and Transcriptomic Analysis Revealed Contribution of Interferon Signaling to Severity of COVID-19.
35427985 2022. Subtractive proteomics assisted therapeutic targets mining and designing ensemble vaccine against Candida auris for immune response induction.
35429230 2022. Viral and cellular translation during SARS-CoV-2 infection.
35430876 2022. Human Coronary Plaque T Cells Are Clonal and Cross-React to Virus and Self.
35434485 2022. Replication-transcription complex of coronaviruses: functions of individual viral non-structural subunits, properties and architecture of their complexes.
35434695 2022. Association of pyroptosis and severeness of COVID-19 as revealed by integrated single-cell transcriptome data analysis.
35434729 2022. A path-based analysis of infected cell line and COVID-19 patient transcriptome reveals novel potential targets and drugs against SARS-CoV-2.
35436306 2022. An endogenously activated antiviral state restricts SARS-CoV-2 infection in differentiated primary airway epithelial cells.
35438176 2022. Molecular signature of postmortem lung tissue from COVID-19 patients suggests distinct trajectories driving mortality.
35441166 2022. Different HMGCR-inhibiting statins vary in their association with increased survival in patients with COVID-19.
35445579 2022. Recent insights into the structure and function of coronavirus ribonucleases.
35446921 2022. Profiling metabolites and lipoproteins in COMETA, an Italian cohort of COVID-19 patients.
35450534 2022. Epigenetic-related effects of COVID-19 on the human cells.
35451177 2022. Photocatalytic Chemical Crosslinking for Profiling RNA-Protein Interactions in Living Cells.
35453568 2022. Molecular Mechanism of Pancreatic beta-Cell Failure in Type 2 Diabetes Mellitus.
35458690 2022. The Dysregulation of the Renin-Angiotensin System in COVID-19 Studied by Serum Proteomics: Angiotensinogen Increases with Disease Severity.
35459226 2022. Human endogenous retrovirus K in the respiratory tract is associated with COVID-19 physiopathology.
35459913 2022. Novel potential metabolic biomarker panel for early detection of severe COVID-19 using full-spectrum metabolome and whole-transcriptome analyses.
35460571 2022. SARS-CoV-2 infection of human-induced pluripotent stem cells-derived lung lineage cells evokes inflammatory and chemosensory responses by targeting mitochondrial pathways.
35461273 2022. SARS-COV-2 as potential microRNA sponge in COVID-19 patients.
35461900 2022. Exosomal mediated signal transduction through artificial microRNA (amiRNA): A potential target for inhibition of SARS-CoV-2.
35464324 2022. MicroRNAs as the Potential Regulators of SARS-CoV-2 Infection and Modifiers of the COVID-19 Clinical Features.
35464396 2022. Multi-Omics Integration Reveals Only Minor Long-Term Molecular and Functional Sequelae in Immune Cells of Individuals Recovered From COVID-19.
35464423 2022. Bioinformatics and System Biology Approach to Identify the Influences of COVID-19 on Rheumatoid Arthritis.
35464437 2022. Long-Read RNA Sequencing Identifies Polyadenylation Elongation and Differential Transcript Usage of Host Transcripts During SARS-CoV-2 In Vitro Infection.
35464969 2022. Rapid and Accurate Detection of SARS Coronavirus 2 by Nanopore Amplicon Sequencing.
35465056 2022. BNT162b2 vaccination enhances interferon-JAK-STAT-regulated antiviral programs in COVID-19 patients infected with the SARS-CoV-2 Beta variant.
35469237 2022. Epigenetic regulation of autophagy in coronavirus disease 2019 (COVID-19).
35469796 2022. Angiopoietin 2 Is Associated with Vascular Necroptosis Induction in Coronavirus Disease 2019 Acute Respiratory Distress Syndrome.
35470238 2022. Subgenomic RNA profiling suggests novel mechanism in coronavirus gene regulation and host adaption.
35474745 2022. Multi-omics in COVID-19: Seeing the unseen but overlooked in the clinic.
35474751 2022. Rapid synchronous type 1 IFN and virus-specific T cell responses characterize first wave non-severe SARS-CoV-2 infections.
35476817 2022. Virus-host interaction networks as new antiviral drug targets for IAV and SARS-CoV-2.
35477000 2022. Characterization and functional interrogation of the SARS-CoV-2 RNA interactome.
35477940 2022. Integrated analysis of transcriptomic data reveals the platelet response in COVID-19 disease.
35479098 2022. Asymptomatic SARS-CoV-2 Infection Is Associated With Higher Levels of Serum IL-17C, Matrix Metalloproteinase 10 and Fibroblast Growth Factors Than Mild Symptomatic COVID-19.
35480316 2022. Global Gene Expression and Docking Profiling of COVID-19 Infection.
35480886 2022. Serum NMR Profiling Reveals Differential Alterations in the Lipoproteome Induced by Pfizer-BioNTech Vaccine in COVID-19 Recovered Subjects and Naive Subjects.
35482476 2022. Dysregulated Ligand-receptor interactions from single cell transcriptomics.
35482673 2022. A Phenome-Wide Association Study of genes associated with COVID-19 severity reveals shared genetics with complex diseases in the Million Veteran Program.
35490333 2022. Clinical applications of plasma proteomics and peptidomics: Towards precision medicine.
35493473 2022. Persistence of SARS-CoV-2 Antibodies in Vaccinated Health Care Workers Analyzed by Coronavirus Antigen Microarray.
35496775 2022. Cognitive deficits and memory impairments after COVID-19 (Covishield) vaccination.
35501398 2022. Mapping the epithelial-immune cell interactome upon infection in the gut and the upper airways.
35501841 2022. Single-cell transcriptomics reveal a unique memory-like NK cell subset that accumulates with ageing and correlates with disease severity in COVID-19.
35502318 2022. Synthetic lethality-based prediction of anti-SARS-CoV-2 targets.
35502829 2022. Bees can be trained to identify SARS-CoV-2 infected samples.
35506060 2022. Transcriptomic analysis reveals optimal cytokine combinations for SARS-CoV-2-specific T cell therapy products.
35508791 2022. Identification of serum metabolites enhancing inflammatory responses in COVID-19.
35511057 2022. deepHPI: a comprehensive deep learning platform for accurate prediction and visualization of host-pathogen protein-protein interactions.
35514065 2022. Phase Separation: "The Master Key" to Deciphering the Physiological and Pathological Functions of Cells.
35520289 2022. Network Pharmacology and Comparative Transcriptome Reveals Biotargets and Mechanisms of Curcumol Treating Lung Adenocarcinoma Patients With COVID-19.
35525888 2022. Bioinformatics analysis reveals molecular connections between non-alcoholic fatty liver disease (NAFLD) and COVID-19.
35528173 2022. Discovering Common Pathophysiological Processes between COVID-19 and Cystic Fibrosis by Differential Gene Expression Pattern Analysis.
35528178 2022. Recognition of Immune Cell Markers of COVID-19 Severity with Machine Learning Methods.
35529862 2022. Identifying Immunological and Clinical Predictors of COVID-19 Severity and Sequelae by Mathematical Modeling.
35531330 2022. Possible Mechanism of SARS-CoV-2 Nsp1-Mediated Control of Viral Gene Expression.
35532162 2022. Serine Protease Inhibitors Restrict Host Susceptibility to SARS-CoV-2 Infections.
35533462 2022. Network for network concept offers new insights into host- SARS-CoV-2 protein interactions and potential novel targets for developing antiviral drugs.
35533463 2022. Enrichment analysis on regulatory subspaces: A novel direction for the superior description of cellular responses to SARS-CoV-2.
35534210 2022. Endothelialitis, Microischemia, and Intussusceptive Angiogenesis in COVID-19.
35536669 2022. A phase I trial of cyclosporine for hospitalized patients with COVID-19.
35538614 2022. Individual genetic variability mainly of Proinflammatory cytokines, cytokine receptors, and toll-like receptors dictates pathophysiology of COVID-19 disease.
35538880 2022. Proteomic profiling of lung diffusion impairment in the recovery stage of SARS-CoV-2-induced ARDS.
35543509 2022. SARS-CoV-2 Variants of Concern Hijack IFITM2 for Efficient Replication in Human Lung Cells.
35543533 2022. Impaired exercise capacity in post-COVID syndrome: the role of VWF-ADAMTS13 axis.
35547851 2022. CNBP restricts SARS-CoV2 by regulating IFN and disrupting RNA-protein condensates.
35554907 2022. Profiling SARS-CoV-2 Infection by High-Throughput Shotgun Proteomics.
35554915 2022. Antiviral Strategies Against SARS-CoV-2: A Systems Biology Approach.
35558576 2022. Identification of Diagnostic Gene Markers and Immune Infiltration in Systemic Lupus.
35563697 2022. Cannabinoids Alleviate the LPS-Induced Cytokine Storm via Attenuating NLRP3 Inflammasome Signaling and TYK2-Mediated STAT3 Signaling Pathways In Vitro.
35568706 2022. Sex differences in global metabolomic profiles of COVID-19 patients.
35572561 2022. Laboratory Biomarkers for Diagnosis and Prognosis in COVID-19.
35572676 2022. Metabolomic Profiling of Plasma Reveals Differential Disease Severity Markers in COVID-19 Patients.
35573725 2022. Comparative Analysis of Long Non-Coding RNA Expression and Immune Response in Mild and Severe COVID-19.
35574937 2022. A high-risk gut microbiota configuration associates with fatal hyperinflammatory immune and metabolic responses to SARS-CoV-2.
35577777 2022. An Artificial Intelligence-guided signature reveals the shared host immune response in MIS-C and Kawasaki disease.
35577935 2022. A comprehensive SARS-CoV-2 and COVID-19 review, Part 1: Intracellular overdrive for SARS-CoV-2 infection.
35581179 2022. Proteomic characterization of Omicron SARS-CoV-2 host response.
35582459 2022. Analyzing single cell transcriptome data from severe COVID-19 patients.
35582503 2022. Transcriptomic analysis of asymptomatic and symptomatic severe Turkish patients in SARS-CoV-2 infection.
35583305 2022. Retinal Findings of Hospitalized Neonates Recovered from COVID-19 Infection: A Prospective, Observational, Descriptive Study.
35584589 2022. Roles of PIKfyve in multiple cellular pathways.
35586248 2022. Sera Metabolomics Characterization of Patients at Different Stages in Wuhan Identifies Critical Biomarkers of COVID-19.
35593050 2022. ScoMorphoFISH: A deep learning enabled toolbox for single-cell single-mRNA quantification and correlative (ultra-)morphometry.
35598057 2022. Bioinformatic Analysis Underpinning the Frequent Occurrence of Immune Thrombocytopenic Purpura in COVID-19 Patients.
35598647 2022. TRPC6 is altered in COVID-19 pneumonia.
35599705 2022. Molecular analysis of vascular gene expression.
35602196 2021. Reduced subgenomic RNA expression is a molecular indicator of asymptomatic SARS-CoV-2 infection.
35604092 2022. The Translational Landscape of SARS-CoV-2-infected Cells Reveals Suppression of Innate Immune Genes.
35604092 2022. The Translational Landscape of SARS-CoV-2-infected Cells Reveals Suppression of Innate Immune Genes.
35605482 2022. Unveiling the nature's fruit basket to computationally identify Citrus sinensis csi-mir169-3p as a probable plant miRNA against Reference and Omicron SARS-CoV-2 genome.
35610660 2022. Transcriptomic perspectives of memory-like NK cells and aging.
35611119 2022. An antibody-based proximity labeling protocol to identify biotinylated interactors of SARS-CoV-2.
35618891 2022. Host genetic basis of COVID-19: from methodologies to genes.
35620480 2022. Identifying Methylation Signatures and Rules for COVID-19 With Machine Learning Methods.
35622336 2022. Single-Cell Analysis and Tracking of Antigen-Specific T Cells: Integrating Paired Chain AIRR-Seq and Transcriptome Sequencing: A Method by the AIRR Community.
35625619 2022. Immune-Related Protein Interaction Network in Severe COVID-19 Patients toward the Identification of Key Proteins and Drug Repurposing.
35631558 2022. A Single-Cell Network-Based Drug Repositioning Strategy for Post-COVID-19 Pulmonary Fibrosis.
35632654 2022. Associations and Disease-Disease Interactions of COVID-19 with Congenital and Genetic Disorders: A Comprehensive Review.
35632738 2022. High Expression of HERV-K (HML-2) Might Stimulate Interferon in COVID-19 Patients.
35632741 2022. SARS-CoV-2 Envelope (E) Protein Binds and Activates TLR2 Pathway: A Novel Molecular Target for COVID-19 Interventions.
35632779 2022. Signaling Pathway Reporter Screen with SARS-CoV-2 Proteins Identifies nsp5 as a Repressor of p53 Activity.
35634344 2022. The Genetic Risk for COVID-19 Severity Is Associated With Defective Immune Responses.
35634577 2022. Immunopathogenic overlap between COVID-19 and tuberculosis identified from transcriptomic meta-analysis and human macrophage infection.
35639648 2022. Pregnancy, Preeclampsia, and COVID-19: Susceptibility and Mechanisms: A Review Study.
35639883 2022. Analysis of SARS-CoV-2 known and novel subgenomic mRNAs in cell culture, animal model, and clinical samples using LeTRS, a bioinformatic tool to identify unique sequence identifiers.
35639922 2022. A distinct dexamethasone-dependent gene expression profile in the lungs of COVID-19 patients.
35640981 2022. DeepLUCIA: predicting tissue-specific chromatin loops using Deep Learning-based Universal Chromatin Interaction Annotator.
35645252 2022. Insights into Cardiovascular Defects and Cardiac Epigenome in the Context of COVID-19.
35648852 2022. A systems biology approach identifies candidate drugs to reduce mortality in severely ill patients with COVID-19.
35654986 2022. The impact of the suppression of highly connected protein interactions on the corona virus infection.
35655464 2022. m6A Regulator-Mediated Methylation Modification Patterns and Characteristics in COVID-19 Patients.
35657140 2022. Screening the hub genes and analyzing the mechanisms in discharged COVID-19 patients retesting positive through bioinformatics analysis.
35661108 2022. RNA editing detection in SARS-CoV-2 transcriptome should be different from traditional SNV identification.
35661455 2022. Deregulation of ceRNA Networks in Frontal Cortex and Choroid Plexus of Brain during SARS-CoV-2 Infection Aggravates Neurological Manifestations: An Insight from Bulk and Single-Cell Transcriptomic Analyses.
35662463 2022. PEPPI: Whole-proteome Protein-protein Interaction Prediction through Structure and Sequence Similarity, Functional Association, and Machine Learning.
35663631 2022. Proteomic Analyses Unveil Actionable Disease Pathways in COVID-19: A Step Toward Targeted Therapies.
35663953 2022. N6-Acetyl-L-Lysine and p-Cresol as Key Metabolites in the Pathogenesis of COVID-19 in Obese Patients.
35664076 2022. The interplay between lncRNAs, RNA-binding proteins and viral genome during SARS-CoV-2 infection reveals strong connections with regulatory events involved in RNA metabolism and immune response.
35664804 2022. The Ramp Atlas: facilitating tissue and cell-specific ramp sequence analyses through an intuitive web interface.
35664994 2022. Whole Genome DNA and RNA Sequencing of Whole Blood Elucidates the Genetic Architecture of Gene Expression Underlying a Wide Range of Diseases.
35669390 2022. Identification of novel regulatory pathways across normal human bronchial epithelial cell lines (NHBEs) and peripheral blood mononuclear cell lines (PBMCs) in COVID-19 patients using transcriptome analysis.

Full dataset second search term

these were retrieved by the filtered second omics search and seem to be important
33915460 2021. Ebsulfur and Ebselen as highly potent scaffolds for the development of potential SARS-CoV-2 antivirals.
32721790 2020. Mechanistic insights of host cell fusion of SARS-CoV-1 and SARS-CoV-2 from atomic resolution structure and membrane dynamics.
32818817 2020. Host-membrane interacting interface of the SARS coronavirus envelope protein: Immense functional potential of C-terminal domain.
32916377 2020. Silico analysis of interaction between full-length SARS-CoV2 S protein with human Ace2 receptor: Modelling, docking, MD simulation.
34883069 2022. SARS-CoV-2 spike binding to ACE2 is stronger and longer ranged due to glycan interaction.
33631204 2021. Ca(2+)-dependent mechanism of membrane insertion and destabilization by the SARS-CoV-2 fusion peptide.
33607086 2021. Biomechanical characterization of SARS-CoV-2 spike RBD and human ACE2 protein-protein interaction.
33484712 2021. Elucidation of interactions regulating conformational stability and dynamics of SARS-CoV-2 S-protein.
33460600 2021. Improving SARS-CoV-2 structures: Peer review by early coordinate release.
34087218 2021. Neuropilin-1 assists SARS-CoV-2 infection by stimulating the separation of Spike protein S1 and S2.
33675757 2021. Binding mode of SARS-CoV-2 fusion peptide to human cellular membrane.
33359834 2021. The Molecular Mechanism of Domain Swapping of the C-Terminal Domain of the SARS-Coronavirus Main Protease.
35378756 2022. CD169-mediated restrictive SARS-CoV-2 infection of macrophages induces pro-inflammatory responses.
35043110 2022. Shift of lung macrophage composition is associated with COVID-19 disease severity and recovery.
34127974 2022. Multi-color super-resolution imaging to study human coronavirus RNA during cellular infection.
35132414 2022. SARS-CoV-2 invades cognitive centers of the brain and induces Alzheimer's-like neuropathology.
34189530 2021. Super.Complex: A supervised machine learning pipeline for molecular complex detection in protein-interaction networks.
34873599 2021. A large-scale systematic survey of SARS-CoV-2 antibodies reveals recurring molecular features.
33758856 2021. Mutational escape from the polyclonal antibody response to SARS-CoV-2 infection is largely shaped by a single class of antibodies.
34159327 2021. Double-stranded RNA drives SARS-CoV-2 nucleocapsid protein to undergo phase separation at specific temperatures.
33501444 2021. An Autoantigen Atlas from Human Lung HFL1 Cells Offers Clues to Neurological and Diverse Autoimmune Manifestations of COVID-19.
33442700 2021. Neuropilin-1 Assists SARS-CoV-2 Infection by Stimulating the Separation of Spike Protein Domains S1 and S2.
33299996 2021. Ca (2+) -dependent mechanism of membrane insertion and destabilization by the SARS-CoV-2 fusion peptide.
33564772 2021. Multiscale three-dimensional imaging of intact human organs down to the cellular scale using hierarchical phase-contrast tomography.
33083801 2021. Reconstructed signaling and regulatory networks identify potential drugs for SARS-CoV-2 infection.
32995791 2020. Baseline T cell immune phenotypes predict virologic and disease control upon SARS-CoV infection.
33083802 2020. Progressive and accurate assembly of multi-domain protein structures from cryo-EM density maps.
32511343 2020. Controlling the SARS-CoV-2 Spike Glycoprotein Conformation.
32511405 2020. Distinct conformational states of SARS-CoV-2 spike protein.
32511375 2020. A single-cell RNA expression map of human coronavirus entry factors.
32577653 2020. SARS-CoV-2 nucleocapsid protein undergoes liquid-liquid phase separation stimulated by RNA and partitions into phases of human ribonucleoproteins.
32766587 2020. The SARS-CoV-2 Nucleocapsid phosphoprotein forms mutually exclusive condensates with RNA and the membrane-associated M protein.
32766577 2020. SARS-CoV-2 Spike Protein Interacts with Multiple Innate Immune Receptors.
32511311 2020. Structural modeling of 2019-novel coronavirus (nCoV) spike protein reveals a proteolytically-sensitive activation loop as a distinguishing feature compared to SARS-CoV and related SARS-like coronaviruses.
32587966 2020. The SARS-CoV-2 nucleocapsid protein is dynamic, disordered, and phase separates with RNA.
32817938 2020. An ultra-potent synthetic nanobody neutralizes SARS-CoV-2 by locking Spike into an inactive conformation.
32677879 2020. Synthetic repurposing of drugs against hypertension: a datamining method based on association rules and a novel discrete algorithm.
33504336 2021. Development of the reproduction number from coronavirus SARS-CoV-2 case data in Germany and implications for political measures.
34535131 2021. Lung disease network reveals impact of comorbidity on SARS-CoV-2 infection and opportunities of drug repurposing.
33892639 2021. Online biophysical predictions for SARS-CoV-2 proteins.
32611313 2020. Identification of a druggable binding pocket in the spike protein reveals a key site for existing drugs potentially capable of combating Covid-19 infectivity.
35241064 2022. Alterations in the oral microbiome of individuals with a healthy oral environment following COVID-19 vaccination.
34674775 2021. Computational determination of toxicity risks associated with a selection of approved drugs having demonstrated activity against COVID-19.
34308111 2021. No evidence that vitamin D is able to prevent or affect the severity of COVID-19 in individuals with European ancestry: a Mendelian randomisation study of open data.
35322889 2022. Cardiovascular drugs and COVID-19 clinical outcomes: a systematic review and meta-analysis of randomized controlled trials.
32745239 2020. Abnormal concentration of porphyrins in serum from COVID-19 patients.
34632567 2022. Pyroptosis targeting via mitochondria: An educated guess to innovate COVID-19 therapies.
34962256 2022. Computationally prioritized drugs inhibit SARS-CoV-2 infection and syncytia formation.
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32750108 2020. Endothelial dysfunction in COVID-19: a position paper of the ESC Working Group for Atherosclerosis and Vascular Biology, and the ESC Council of Basic Cardiovascular Science.
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32155444 2020. Structure, Function, and Antigenicity of the SARS-CoV-2 Spike Glycoprotein.
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33295347 2020. Tracing the driving forces responsible for the remarkable infectivity of 2019-nCoV: 1. Receptor binding domain in its bound and unbound states.
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33238570 2020. The Potential Role of Osteopontin and Furin in Worsening Disease Outcomes in COVID-19 Patients with Pre-Existing Diabetes.
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32545714 2020. Reaction Cycles of Halogen Species in the Immune Defense: Implications for Human Health and Diseases and the Pathology and Treatment of COVID-19.
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32568187 2020. COVID-19 and the endothelium.
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33209300 2020. Increased IL-10-producing regulatory T cells are characteristic of severe cases of COVID-19.
32864128 2020. Systematic analysis of disease-specific immunological signatures in patients with febrile illness from Saudi Arabia.
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34853399 2021. Amantadine has potential for the treatment of COVID-19 because it inhibits known and novel ion channels encoded by SARS-CoV-2.
33875803 2021. Amplification-free RNA detection with CRISPR-Cas13.
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32771962 2020. An in-silico approach to study the possible interactions of miRNA between human and SARS-CoV2.
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32330208 2020. Machine learning using intrinsic genomic signatures for rapid classification of novel pathogens: COVID-19 case study.
33493182 2021. Furin cleavage of SARS-CoV-2 Spike promotes but is not essential for infection and cell-cell fusion.
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32150576 2020. Structure of mouse coronavirus spike protein complexed with receptor reveals mechanism for viral entry.
35321887 2022. High level of lactate dehydrogenase and ischaemia-reperfusion injury regulate the multiple organ dysfunction in patients with COVID-19.
35576468 2022. The risk of COVID-19 death is much greater and age dependent with type I IFN autoantibodies.
35165203 2022. Structure and dynamics of SARS-CoV-2 proofreading exoribonuclease ExoN.
35022216 2022. Epistatic models predict mutable sites in SARS-CoV-2 proteins and epitopes.
35363556 2022. Structural conservation among variants of the SARS-CoV-2 spike postfusion bundle.
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32994342 2020. Coronavirus hemagglutinin-esterase and spike proteins coevolve for functional balance and optimal virion avidity.
32376634 2020. Cell entry mechanisms of SARS-CoV-2.
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32606248 2020. Genomic discovery of an evolutionarily programmed modality for small-molecule targeting of an intractable protein surface.
32654247 2020. Architecture and self-assembly of the SARS-CoV-2 nucleocapsid protein.
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32702726 2020. SARS-CoV2 drives JAK1/2-dependent local and systemic complement hyper-activation.
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33277323 2021. Conformational dynamics of SARS-CoV-2 trimeric spike glycoprotein in complex with receptor ACE2 revealed by cryo-EM.
33536217 2021. Leveraging systems biology for predicting modulators of inflammation in patients with COVID-19.
32948512 2020. Antibody-like proteins that capture and neutralize SARS-CoV-2.
34413140 2021. X-linked recessive TLR7 deficiency in ~1% of men under 60 years old with life-threatening COVID-19.
34413139 2021. Autoantibodies neutralizing type I IFNs are present in ~4% of uninfected individuals over 70 years old and account for ~20% of COVID-19 deaths.
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34741071 2021. Diosmectite inhibits the interaction between SARS-CoV-2 and human enterocytes by trapping viral particles, thereby preventing NF-kappaB activation and CXCL10 secretion.
34737330 2021. Link between serum lipid signature and prognostic factors in COVID-19 patients.
34290262 2021. Lipid bilayer degradation induced by SARS-CoV-2 spike protein as revealed by neutron reflectometry.
33608565 2021. Flexibility and mobility of SARS-CoV-2-related protein structures.
33436498 2021. Cytoplasmic short linear motifs in ACE2 and integrin beta3 link SARS-CoV-2 host cell receptors to mediators of endocytosis and autophagy.
33436497 2021. Short linear motif candidates in the cell entry system used by SARS-CoV-2 and their potential therapeutic implications.
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34016740 2021. Structural and functional ramifications of antigenic drift in recent SARS-CoV-2 variants.
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33291622 2020. Type I Interferon Signature in Chilblain-Like Lesions Associated with the COVID-19 Pandemic.
32657473 2020. TWIRLS, a knowledge-mining technology, suggests a possible mechanism for the pathological changes in the human host after coronavirus infection via ACE2.
33609782 2021. Inflammation control and improvement of cognitive function in COVID-19 infections: is there a role for kynurenine 3-monooxygenase inhibition?
33971404 2021. Circulating extracellular vesicles are endowed with enhanced procoagulant activity in SARS-CoV-2 infection.
35600330 2022. Highly multiplexed immune repertoire sequencing links multiple lymphocyte classes with severity of response to COVID-19.
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35323111 2022. Conformational dynamics and allosteric modulation of the SARS-CoV-2 spike.
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33570492 2021. The allosteric modulation of complement C5 by knob domain peptides.
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33899740 2021. High infectiousness immediately before COVID-19 symptom onset highlights the importance of continued contact tracing.
32452762 2020. SARS-CoV-2 strategically mimics proteolytic activation of human ENaC.
32559343 2020. Rationale for targeting complement in COVID-19.
35527514 2022. ADAM10 and ADAM17 promote SARS-CoV-2 cell entry and spike protein-mediated lung cell fusion.
34989664 2022. Obatoclax inhibits SARS-CoV-2 entry by altered endosomal acidification and impaired cathepsin and furin activity in vitro.
33258732 2020. Detection of breastmilk antibodies targeting SARS-CoV-2 nucleocapsid, spike and receptor-binding-domain antigens.
32178593 2020. Emerging WuHan (COVID-19) coronavirus: glycan shield and structure prediction of spike glycoprotein and its interaction with human CD26.
33235976 2020. Combating COVID-19 with tissue engineering: a review.
35221835 2022. Environmental factors influencing the transmission of the coronavirus 2019: a review.
33223326 2021. Endocrine disrupting chemicals and COVID-19 relationships: A computational systems biology approach.
32846644 2020. Imiquimod - A toll like receptor 7 agonist - Is an ideal option for management of COVID 19.
32959998 2020. Fatal lymphocytic cardiac damage in coronavirus disease 2019 (COVID-19): autopsy reveals a ferroptosis signature.
35151223 2022. Antioxidant, anti-inflammatory and immunomodulatory roles of vitamins in COVID-19 therapy.
33812315 2021. Structure-based drug design of an inhibitor of the SARS-CoV-2 (COVID-19) main protease using free software: A tutorial for students and scientists.
32919938 2020. Macrophage responses associated with COVID-19: A pharmacological perspective.
32444400 2020. COVID-19 and the nicotinic cholinergic system.
32269085 2020. Pathogenesis of COVID-19 from a cell biology perspective.
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35157347 2022. Structural polymorphism of coiled-coils from the stalk domain of SARS-CoV-2 spike protein.
33368679 2021. Spatial and temporal roles of SARS-CoV PL(pro) -A snapshot.
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33449359 2021. Dynamics and electrostatics define an allosteric druggable site within the receptor-binding domain of SARS-CoV-2 spike protein.
32449939 2020. SARS-CoV-2 spike glycoprotein-binding proteins expressed by upper respiratory tract bacteria may prevent severe viral infection.
32379896 2020. Knowledge-based structural models of SARS-CoV-2 proteins and their complexes with potential drugs.
32374074 2020. Potential anti-SARS-CoV-2 drug candidates identified through virtual screening of the ChEMBL database for compounds that target the main coronavirus protease.
33503469 2021. Nicotinic cholinergic system and COVID-19: In silico identification of interactions between alpha7 nicotinic acetylcholine receptor and the cryptic epitopes of SARS-Co-V and SARS-CoV-2 Spike glycoproteins.
33838172 2021. Is SARS-CoV-2 Spike glycoprotein impairing macrophage function via alpha7-nicotinic acetylcholine receptors?
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33038452 2020. Molecular mechanisms of the novel coronavirus SARS-CoV-2 and potential anti-COVID19 pharmacological targets since the outbreak of the pandemic.
33855053 2021. Stroke in SARS-CoV-2 Infection: A Pictorial Overview of the Pathoetiology.
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35517495 2022. SARS-CoV-2 Employ BSG/CD147 and ACE2 Receptors to Directly Infect Human Induced Pluripotent Stem Cell-Derived Kidney Podocytes.
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35573805 2022. Open data facilitate resilience in science during the COVID-19 pandemic.
34925459 2021. Approaching Genetics Through the MHC Lens: Tools and Methods for HLA Research.
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35386702 2022. Plasma Cytokine Atlas Reveals the Importance of TH2 Polarization and Interferons in Predicting COVID-19 Severity and Survival.
35359960 2022. On the Origin of Neutrophil Extracellular Traps in COVID-19.
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33692801 2021. The Outcome of Critically Ill COVID-19 Patients Is Linked to Thromboinflammation Dominated by the Kallikrein/Kinin System.
33643285 2020. VISTA: A Target to Manage the Innate Cytokine Storm.
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34805220 2021. Transient Receptor Potential Vanilloid Subtype 1: Potential Role in Infection, Susceptibility, Symptoms and Treatment of COVID-19.
34095160 2021. iOntoBioethics: A Framework for the Agile Development of Bioethics Ontologies in Pandemics, Applied to COVID-19.
35444632 2022. Impact of SARS-CoV-2 on Host Factors Involved in Mental Disorders.
35283834 2022. Interactions of Severe Acute Respiratory Syndrome Coronavirus 2 Protein E With Cell Junctions and Polarity PSD-95/Dlg/ZO-1-Containing Proteins.
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33815346 2021. Learning From Mistakes: The Role of Phages in Pandemics.
33101264 2020. Genetic Spectrum and Distinct Evolution Patterns of SARS-CoV-2.
33042039 2020. Flexible, Functional, and Familiar: Characteristics of SARS-CoV-2 Spike Protein Evolution.
35087864 2021. CRISPR Technology in Gene-Editing-Based Detection and Treatment of SARS-CoV-2.
35004841 2021. Energy Bilocalization Effect and the Emergence of Molecular Functions in Proteins.
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33659275 2021. Molecular Mechanisms Behind Anti SARS-CoV-2 Action of Lactoferrin.
33537341 2020. Deletion of BST2 Cytoplasmic and Transmembrane N-Terminal Domains Results in SARS-CoV, SARS-CoV-2, and Influenza Virus Production Suppression in a Vero Cell Line.
35558754 2022. Genetically Predicted Circulating Concentrations of Micronutrients and COVID-19 Susceptibility and Severity: A Mendelian Randomization Study.
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32581799 2020. Molecular Insights Into SARS COV-2 Interaction With Cardiovascular Disease: Role of RAAS and MAPK Signaling.
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33574769 2021. Targeting Endolysosomal Two-Pore Channels to Treat Cardiovascular Disorders in the Novel COronaVIrus Disease 2019.
32694201 2020. Distinct conformational states of SARS-CoV-2 spike protein.
32703906 2020. Structure-based design of prefusion-stabilized SARS-CoV-2 spikes.
32763915 2020. A molecular pore spans the double membrane of the coronavirus replication organelle.
32817270 2020. In situ structural analysis of SARS-CoV-2 spike reveals flexibility mediated by three hinges.
32958580 2020. Free fatty acid binding pocket in the locked structure of SARS-CoV-2 spike protein.
32972994 2020. Ultrapotent human antibodies protect against SARS-CoV-2 challenge via multiple mechanisms.
32691370 2021. SARS-CoV-2 Entry Receptor ACE2 Is Expressed on Very Small CD45(-) Precursors of Hematopoietic and Endothelial Cells and in Response to Virus Spike Protein Activates the Nlrp3 Inflammasome.
32355638 2020. Editorial: Nicotine and SARS-CoV-2: COVID-19 may be a disease of the nicotinic cholinergic system.
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32785687 2020. Crippling life support for SARS-CoV-2 and other viruses through synthetic lethality.
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32422996 2020. Highly Conserved Homotrimer Cavity Formed by the SARS-CoV-2 Spike Glycoprotein: A Novel Binding Site.
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33099199 2021. Exploring the intrinsic dynamics of SARS-CoV-2, SARS-CoV and MERS-CoV spike glycoprotein through normal mode analysis using anisotropic network model.
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33269361 2020. Cytokine ranking via mutual information algorithm correlates cytokine profiles with presenting disease severity in patients with COVID-19.
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34638137 2022. The Neighborhood of the Spike Gene Is a Hotspot for Modular Intertypic Homologous and Nonhomologous Recombination in Coronavirus Genomes.
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32289821 2020. Extreme Genomic CpG Deficiency in SARS-CoV-2 and Evasion of Host Antiviral Defense.
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33391623 2020. Manganese nanodepot augments host immune response against coronavirus.
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35058437 2022. Circulating ACE2-expressing extracellular vesicles block broad strains of SARS-CoV-2.
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32709887 2020. Structural analysis of the SARS-CoV-2 methyltransferase complex involved in RNA cap creation bound to sinefungin.
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32341570 2020. The new scope of virus taxonomy: partitioning the virosphere into 15 hierarchical ranks.
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33824483 2021. Endothelial dysfunction and immunothrombosis as key pathogenic mechanisms in COVID-19.
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32355328 2020. Impaired interferon signature in severe COVID-19.
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32737467 2020. A thermostable, closed SARS-CoV-2 spike protein trimer.
32699321 2020. Controlling the SARS-CoV-2 spike glycoprotein conformation.
32225175 2020. Structural basis of receptor recognition by SARS-CoV-2.
32015507 2020. A pneumonia outbreak associated with a new coronavirus of probable bat origin.
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33053430 2020. The SARS-CoV-2 spike protein alters barrier function in 2D static and 3D microfluidic in-vitro models of the human blood-brain barrier.
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32348111 2020. Is the Collapse of the Respiratory Center in the Brain Responsible for Respiratory Breakdown in COVID-19 Patients?
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35105380 2022. Neutrophils predominate the immune signature of cerebral thrombi in COVID-19 stroke patients.
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32223077 2020. Neuroinfection may contribute to pathophysiology and clinical manifestations of COVID-19.
35432617 2022. On the role of data, statistics and decisions in a pandemic.
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33877321 2021. A Cytokine/Bradykinin Storm Comparison: What Is the Relationship Between Hypertension and COVID-19?
33198951 2021. MMR Vaccination: A Potential Strategy to Reduce Severity and Mortality of COVID-19 Illness.
32501731 2020. Cholesterol: A new game player accelerating vasculopathy caused by SARS-CoV-2?
34231390 2021. Erythrocytes identify complement activation in patients with COVID-19.
32996774 2020. Vitamin D supplementation as a rational pharmacological approach in the COVID-19 pandemic.
34534435 2021. Dynamics of the Upper Respiratory Tract Microbiota and Its Association with Mortality in COVID-19.
32866033 2020. Uncontrolled Innate and Impaired Adaptive Immune Responses in Patients with COVID-19 Acute Respiratory Distress Syndrome.
33064451 2020. Comprehensive Analysis of the Glycan Complement of SARS-CoV-2 Spike Proteins Using Signature Ions-Triggered Electron-Transfer/Higher-Energy Collisional Dissociation (EThcD) Mass Spectrometry.
32678978 2020. The Utility of Native MS for Understanding the Mechanism of Action of Repurposed Therapeutics in COVID-19: Heparin as a Disruptor of the SARS-CoV-2 Interaction with Its Host Cell Receptor.
35191576 2022. The SARS-CoV-2 Spike Glycoprotein Directly Binds Exogeneous Sialic Acids: A NMR View.
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33440681 2021. Viroinformatics-Based Analysis of SARS-CoV-2 Core Proteins for Potential Therapeutic Targets.
32575554 2020. Targeting the Heme-Heme Oxygenase System to Prevent Severe Complications Following COVID-19 Infections.
34562174 2021. Cryo-EM as a powerful tool for drug discovery: recent structural based studies of SARS-CoV-2.
32493627 2020. Structural Proteins in Severe Acute Respiratory Syndrome Coronavirus-2.
32550242 2020. SARS-CoV-2 Entry Genes Are Most Highly Expressed in Nasal Goblet and Ciliated Cells within Human Airways.
34191753 2021. Renal Considerations in COVID-19: Biology, Pathology, and Pathophysiology.
33899609 2021. COVID-19: captures iron and generates reactive oxygen species to damage the human immune system.
35063769 2022. How tetraspanin-mediated cell entry of SARS-CoV-2 can dysregulate the shedding of the ACE2 receptor by ADAM17.
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33309272 2021. Identification of antiviral antihistamines for COVID-19 repurposing.
32943188 2021. RNA-dependent RNA polymerase: Structure, mechanism, and drug discovery for COVID-19.
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32977949 2020. Andrographolide and its fluorescent derivative inhibit the main proteases of 2019-nCoV and SARS-CoV through covalent linkage.
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32293875 2020. Why Are Lopinavir and Ritonavir Effective against the Newly Emerged Coronavirus 2019? Atomistic Insights into the Inhibitory Mechanisms.
34565312 2021. Non-Canonical Translation Initiation Mechanisms Employed by Eukaryotic Viral mRNAs.
33838638 2021. Free SARS-CoV-2 Spike Protein S1 Particles May Play a Role in the Pathogenesis of COVID-19 Infection.
34662705 2022. Sequence complementarity between human noncoding RNAs and SARS-CoV-2 genes: What are the implications for human health?
33484784 2021. Protein structural heterogeneity: A hypothesis for the basis of proteolytic recognition by the main protease of SARS-CoV and SARS-CoV-2.
35411301 2022. Gut microbial signature and gut-lung axis: A possible role in the therapy of COVID-19.
32793443 2020. Computational-based drug repurposing methods in COVID-19.
32994678 2020. Comparative molecular docking analysis of the SARS CoV-2 Spike glycoprotein with the human ACE-2 receptors and thrombin.
33600624 2021. Intracellular host cell membrane remodelling induced by SARS-CoV-2 infection in vitro.
33666950 2021. A comprehensive library of fluorescent constructs of SARS-CoV-2 proteins and their initial characterisation in different cell types.
33066821 2020. COVID-19 and iron dysregulation: distant sequence similarity between hepcidin and the novel coronavirus spike glycoprotein.
32572334 2020. Application of System Biology to Explore the Association of Neprilysin, Angiotensin-Converting Enzyme 2 (ACE2), and Carbonic Anhydrase (CA) in Pathogenesis of SARS-CoV-2.
35053123 2022. The COVID-19 Infection Diffusion in the US and Japan: A Graph-Theoretical Approach.
35336746 2022. NF-kappaB Signaling and Inflammation-Drug Repurposing to Treat Inflammatory Disorders?
34072585 2021. Immune Responses to SARS-CoV2 Mirror Societal Responses to COVID-19: Identifying Factors Underlying a Successful Viral Response.
33669895 2021. Are There Any Parameters Missing in the Mathematical Models Applied in the Process of Spreading COVID-19?
35053020 2021. SARS-CoV-2 Infection and Pancreatic beta Cell Failure.
34571729 2021. The Role of Acidosis in the Pathogenesis of Severe Forms of COVID-19.
33019595 2020. The Human Respiratory System and its Microbiome at a Glimpse.
32580293 2020. A Brief Theory of Epidemic Kinetics.
33646442 2021. Experimental tracking and numerical mapping of novel coronavirus micro-droplet deposition through nasal inhalation in the human respiratory system.
34667599 2021. Endothelial dysfunction and COVID-19 (Review).
34651049 2021. Neuropsychiatric Ramifications of COVID-19: Short-Chain Fatty Acid Deficiency and Disturbance of Microbiota-Gut-Brain Axis Signaling.
35052867 2022. Penetration of the SARS-CoV-2 Spike Protein across the Blood-Brain Barrier, as Revealed by a Combination of a Human Cell Culture Model System and Optical Biosensing.
35453663 2022. Inorganic Polyphosphate-Regulator of Cellular Metabolism in Homeostasis and Disease.
33808956 2021. Brain Metabolic Correlates of Persistent Olfactory Dysfunction after SARS-Cov2 Infection.
34440207 2021. Multiple-Organ Complement Deposition on Vascular Endothelium in COVID-19 Patients.
35437978 2022. The capture of host cell's resources: The role of heat shock proteins and polyamines in SARS-COV-2 (COVID-19) pathway to viral infection.
35053224 2022. Calcium Signaling Pathway Is Involved in the Shedding of ACE2 Catalytic Ectodomain: New Insights for Clinical and Therapeutic Applications of ACE2 for COVID-19.
35204727 2022. New Insights into the Role of the Complement System in Human Viral Diseases.
34827621 2021. The Effects of Vitamin D on Immune System and Inflammatory Diseases.
34634813 2022. VarEPS: an evaluation and prewarning system of known and virtual variations of SARS-CoV-2 genomes.
34396391 2022. T-CoV: a comprehensive portal of HLA-peptide interactions affected by SARS-CoV-2 mutations.
34352100 2021. NMPylation and de-NMPylation of SARS-CoV-2 nsp9 by the NiRAN domain.
33035337 2021. DockCoV2: a drug database against SARS-CoV-2.
34733373 2021. Association between Hypomagnesemia, COVID-19, Respiratory Tract and Lung Disease.
35215199 2022. SARS-CoV-2 Infects Primary Neurons from Human ACE2 Expressing Mice and Upregulates Genes Involved in the Inflammatory and Necroptotic Pathways.
33809954 2021. Why Does SARS-CoV-2 Infection Induce Autoantibody Production?
33196056 2021. KG-COVID-19: A Framework to Produce Customized Knowledge Graphs for COVID-19 Response.
33025261 2020. A Systems Biology Workflow for Drug and Vaccine Repurposing: Identifying Small-Molecule BCG Mimics to Reduce or Prevent COVID-19 Mortality.
35631444 2022. Integrin/TGF-beta1 Inhibitor GLPG-0187 Blocks SARS-CoV-2 Delta and Omicron Pseudovirus Infection of Airway Epithelial Cells In Vitro, Which Could Attenuate Disease Severity.
33477294 2021. COVID-19-The Potential Beneficial Therapeutic Effects of Spironolactone during SARS-CoV-2 Infection.
33687995 2021. Therapeutic Targeting of the Complement System: From Rare Diseases to Pandemics.
34634033 2021. SARS-CoV-2 nucleocapsid protein forms condensates with viral genomic RNA.
34735434 2021. Mouse-adapted SARS-CoV-2 protects animals from lethal SARS-CoV challenge.
33750978 2021. A quantitative model used to compare within-host SARS-CoV-2, MERS-CoV, and SARS-CoV dynamics provides insights into the pathogenesis and treatment of SARS-CoV-2.
34962926 2021. A genome-wide CRISPR screen identifies interactors of the autophagy pathway as conserved coronavirus targets.
35255089 2022. Multiphysics and multiscale modeling of microthrombosis in COVID-19.
34159794 2021. Endothelial metabolism in pulmonary vascular homeostasis and acute respiratory distress syndrome.
35471837 2022. Emerging Paradigms in Type 2 Immunity.
35285479 2022. Drug repurposing in silico screening platforms.
32510142 2020. alpha-glucosidase inhibitors as host-directed antiviral agents with potential for the treatment of COVID-19.
33349063 2021. Potential protective effects of antihypertensive treatments during the Covid-19 pandemic: from inhibitors of the renin-angiotensin system to beta-adrenergic receptor blockers.
34514483 2021. Zinc(2+) ion inhibits SARS-CoV-2 main protease and viral replication in vitro.
32633733 2020. Interaction of hydroxychloroquine with SARS-CoV2 functional proteins using all-atoms non-equilibrium alchemical simulations.
33084150 2021. Why Does the Novel Coronavirus Spike Protein Interact so Strongly with the Human ACE2? A Thermodynamic Answer.
33160533 2020. Chicken Soup for the Treatment of Respiratory Infections.
33285628 2021. Interstitial lung opacities in patients with severe COVID-19 pneumonia by bedside high-resolution ultrasound in association to CO2 retention.
34369712 2021. Novel Coronavirus: A Review from Origin to Current Status of Therapeutic Strategies.
33463917 2020. Minireview: The Introduction of COVID-19 and Microvascular Disease-Introduction of COVID-19 and the Relationship between Its Receptor and Diabetic Vascular Complications.
34470511 2021. Vitamin D in respiratory viral infections: a key immune modulator?
34488601 2022. Structural Understanding of SARS-CoV-2 Drug Targets, Active Site Contour Map Analysis and COVID-19 Therapeutics.
32772742 2020. Non-chemical signatures of biological materials: Radio signals from Covid19?
34983356 2022. Metainflammation in COVID-19.
34081326 2021. Flow cytometry data mining by cytoChain identifies determinants of exhaustion and stemness in TCR-engineered T cells.
34823627 2021. Alveolar macrophages: novel therapeutic targets for respiratory diseases.
34142714 2021. The angiotensin converting enzyme 2 (ACE2) system in the brain: possible involvement in Neuro-Covid.
34881529 2021. Clustered regularly interspaced short palindromic repeats, a glimpse - impacts in molecular biology, trends and highlights.
34864654 2022. COVID-19 pandemic: Insights into genetic susceptibility to SARS-CoV-2 and host genes implications on virus spread, disease severity and outcomes.
34715018 2021. APOL1 risk variants in individuals of African genetic ancestry drive endothelial cell defects that exacerbate sepsis.
35068397 2022. An Overview of Antiviral Properties of Bacteriophages with Emphasis on the Treatment of COVID-19 Infection.

Omics of Covid-19 disease

Aktuelle Version vom 2. Dezember 2022, 20:07 Uhr

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Covid Omics Databases and Webservers

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@@ Zeile 1: / Zeile 1: @@
 Maybe, specific information might be found in the raw readout of proteomic datasets.
-Searchterm applied (gives 9900 papers on june 7th 2022)
+__TOC__
- http://www.moremed.org/SiteSearch.php?S1=transcriptom*+OR+transcription*+OR+proteom*+OR+gene+expression+OR+interactom*+OR+omics+OR+hub+genes+OR+epigenom*+OR+dna+methylation+OR+metabolom*+OR+gene+chip+OR+transcripts+OR+microarray+OR+receptorom*+OR+glycom*+OR+differential+expression&S2=covid19+OR+covid-19+OR+sars-cov2+OR+sars-cov-2+&S3=&submit=submit&px1=proxy.nationallizenzen.de&px2=&px3=&px4=&R=all&Y0=1500&Y1=2025
+==Searchterm applied==
+(gives 9900 papers on june 7th 2022)
+http://www.moremed.org/SiteSearch.php?S1=transcriptom*+OR+transcription*+OR+proteom*+OR+gene+expression+OR+interactom*+OR+omics+OR+hub+genes+OR+epigenom*+OR+dna+methylation+OR+metabolom*+OR+gene+chip+OR+transcripts+OR+microarray+OR+receptorom*+OR+glycom*+OR+differential+expression&S2=covid19+OR+covid-19+OR+sars-cov2+OR+sars-cov-2+&S3=&submit=submit&px1=proxy.nationallizenzen.de&px2=&px3=&px4=&R=all&Y0=1500&Y1=2025
+(additional 4493 papers) NOT SCANNED YET
+http://www.moremed.org/SiteSearch.php?S1=gwas+OR+signature+OR+system+biology+OR+systems+biology+OR+atlas+OR+multiomic*&S2=%28covid19+OR+covid-19+OR+sars-cov2+OR+sars-cov-2+%29+AND+1995%3A2022%2F06%2F07%5BEDAT%5D&S3=transcriptom*+OR+transcription*+OR+proteom*+OR+gene+expression+OR+interactom*+OR+omics+OR+hub+genes+OR+epigenom*+OR+dna+methylation+OR+metabolom*+OR+gene+chip+OR+transcripts+OR+microarray+OR+receptorom*+OR+glycom*+OR+differential+expression&submit=submit&px1=proxy.nationallizenzen.de&px2=&px3=&px4=&R=all&Y0=1500&Y1=2025
+.500 papers were retrieved from about 200.000 covid papers.
+while reading the medline lists, papers were assigned to three classes:
+a) dedicated databases or big datasets, some other db included, about 200 items
+b) papers with very important topics, less than 100 items
+c) other interesting papers, about 2500 items
 ==Covid Omics Databases and Webservers==
@@ Zeile 11: / Zeile 28: @@
 {{tp|p=34075382|t=2021. CovidExpress: an interactive portal for intuitive investigation on SARS-CoV-2 related transcriptomes.|pdf=|usr=}}
 {{tp|p=32587962|t=2020. The IMEx Coronavirus interactome: an evolving map of Coronaviridae-Host molecular interactions.|pdf=|usr=}}
-{{tp|p=33413085|t=2021. H2V: a database of human genes and proteins that respond to SARS-CoV-2, SARS-CoV, and MERS-CoV infection.|pdf=|usr=}}
+{{tp|p=33206959|t=2020. The IMEx coronavirus interactome: an evolving map of Coronaviridae-host molecular interactions.|pdf=|usr=}}
+{{tp|p=33413085|t=2021. H2V: a database of human genes and proteins that respond to SARS-CoV-2, SARS-CoV, and MERS-CoV infection.|pdf=|usr=}}  [http://www.datjar.com:40090/h2v/]
 {{tp|p=34448623|t=2021. A Novel Pathway Network Analytics Method Based on Graph Theory.|pdf=|usr=}}
 {{tp|p=33605735|t=2021. Open Science Resources for the Mass Spectrometry-Based Analysis of SARS-CoV-2.|pdf=|usr=}}
 {{tp|p=32930583|t=2020. Quantification of mRNA Expression Using Single-Molecule Nanopore Sensing.|pdf=|usr=}}
-{{tp|p=33553941|t=2021. SARSCOVIDB-A New Platform for the Analysis of the Molecular Impact of SARS-CoV-2 Viral Infection.|pdf=|usr=}}
+{{tp|p=33553941|t=2021. SARSCOVIDB-A New Platform for the Analysis of the Molecular Impact of SARS-CoV-2 Viral Infection.|pdf=|usr=}} [https://sarscovidb.org/database/]
 {{tp|p=33501381|t=2020. Fostering global data sharing: highlighting the recommendations of the Research Data Alliance COVID-19 working group.|pdf=|usr=}}
+{{tp|p=34718395|t=2022. A comprehensive review of the analysis and integration of omics data for SARS-CoV-2 and COVID-19.|pdf=|usr=}}
+{{tp|p=34424948|t=2021. DeepDRIM: a deep neural network to reconstruct cell-type-specific gene regulatory network using single-cell RNA-seq data.|pdf=|usr=}}
+{{tp|p=34111889|t=2021. Single-cell multi-omics sequencing: application trends, COVID-19, data analysis issues and prospects.|pdf=|usr=}}
+{{tp|p=34076249|t=2021. Transcriptomic studies revealed pathophysiological impact of COVID-19 to predominant health conditions.|pdf=|usr=}}
+{{tp|p=34009288|t=2021. Multi-omics data integration and network-based analysis drives a multiplex drug repurposing approach to a shortlist of candidate drugs against COVID-19.|pdf=|usr=}}
+{{tp|p=33592108|t=2021. Data science in unveiling COVID-19 pathogenesis and diagnosis: evolutionary origin to drug repurposing.|pdf=|usr=}}
+{{tp|p=33416848|t=2021. SARS-CoV-2 3D database: understanding the coronavirus proteome and evaluating possible drug targets.|pdf=|usr=}}
+{{tp|p=33057582|t=2021. Web tools to fight pandemics: the COVID-19 experience.|pdf=|usr=}}
+{{tp|p=34767776|t=2021. COVID-19 immune features revealed by a large-scale single-cell transcriptome atlas.|pdf=|usr=}}
+{{tp|p=33657410|t=2021. COVID-19 immune features revealed by a large-scale single-cell transcriptome atlas.|pdf=|usr=}}
+{{tp|p=34471261|t=2021. Multiomics: unraveling the panoramic landscapes of SARS-CoV-2 infection.|pdf=|usr=}}
+{{tp|p=34348131|t=2021. The COVIDome Explorer researcher portal.|pdf=|usr=}} [https://covidome.shinyapps.io/Transcriptome/]
+{{tp|p=33310371|t=2021. Recent trends on omics and bioinformatics approaches to study SARS-CoV-2: A bibliometric analysis and mini-review.|pdf=|usr=}}
+{{tp|p=33301953|t=2021. Next-generation computational tools and resources for coronavirus research: From detection to vaccine discovery.|pdf=|usr=}}
+{{tp|p=32864402|t=2020. Dataset of mutational analysis, miRNAs targeting SARS-CoV-2 genes and host gene expression in SARS-CoV and SARS-CoV-2 infections.|pdf=|usr=}}
+{{tp|p=32835036|t=2020. Quantitative proteomic dataset from oro- and naso-pharyngeal swabs used for COVID-19 diagnosis: Detection of viral proteins and host's biological processes altered by the infection.|pdf=|usr=}}
+{{tp|p=35134150|t=2022. SCANNER: a web platform for annotation, visualization and sharing of single cell RNA-seq data.|pdf=|usr=}}
+{{tp|p=33009914|t=2021. A database resource and online analysis tools for coronaviruses on a historical and global scale.|pdf=|usr=}}
+{{tp|p=32404885|t=2020. The COVID-19 Host Genetics Initiative, a global initiative to elucidate the role of host genetic factors in susceptibility and severity of the SARS-CoV-2 virus pandemic.|pdf=|usr=}}
+{{tp|p=33194800|t=2020. Systems Biology Approaches for Therapeutics Development Against COVID-19.|pdf=|usr=}}
+{{tp|p=35003208|t=2021. COVID-19 Transcriptomic Atlas: A Comprehensive Analysis of COVID-19 Related Transcriptomics Datasets.|pdf=|usr=}}
+{{tp|p=34975833|t=2021. Understanding Gene Expression and Transcriptome Profiling of COVID-19: An Initiative Towards the Mapping of Protective Immunity Genes Against SARS-CoV-2 Infection.|pdf=|usr=}}
+{{tp|p=32670298|t=2020. Immune and Metabolic Signatures of COVID-19 Revealed by Transcriptomics Data Reuse.|pdf=|usr=}}
+{{tp|p=34557504|t=2021. Unraveling Risk Genes of COVID-19 by Multi-Omics Integrative Analyses.|pdf=|usr=}}
+{{tp|p=35047913|t=2021. The SIRAH-CoV-2 Initiative: A Coarse-Grained Simulations' Dataset of the SARS-CoV-2 Proteome.|pdf=|usr=}}
+{{tp|p=35531299|t=2022. The Intricacy of the Viral-Human Protein Interaction Networks: Resources, Data, and Analyses.|pdf=|usr=}}
+{{tp|p=33324374|t=2020. Comparative Transcriptome Analysis Reveals the Intensive Early Stage Responses of Host Cells to SARS-CoV-2 Infection.|pdf=|usr=}}
+{{tp|p=33585554|t=2020. SARS-CoV-2 Proteins Exploit Host's Genetic and Epigenetic Mediators for the Annexation of Key Host Signaling Pathways.|pdf=|usr=}}
+{{tp|p=34530086|t=2022. An overview of human proteins and genes involved in SARS-CoV-2 infection.|pdf=|usr=}}
+{{tp|p=33263093|t=2021. Gene expression profiling of corona virus microarray datasets to identify crucial targets in COVID-19 patients.|pdf=|usr=}}
+{{tp|p=34401607|t=2021. Systems level insights into the impact of airborne exposure on SARS-CoV-2 pathogenesis and COVID-19 outcome - A multi-omics big data study.|pdf=|usr=}}
+{{tp|p=33553808|t=2020. Bioinformatics analyses of significant genes, related pathways, and candidate diagnostic biomarkers and molecular targets in SARS-CoV-2/COVID-19.|pdf=|usr=}}
+{{tp|p=33809949|t=2021. A Resource for the Network Representation of Cell Perturbations Caused by SARS-CoV-2 Infection.|pdf=|usr=}}
+{{tp|p=34209818|t=2021. Toward a Coronavirus Knowledge Graph.|pdf=|usr=}}
+{{tp|p=35002537|t=2021. Identification of Differentially Expressed Genes in COVID-19 and Integrated Bioinformatics Analysis of Signaling Pathways.|pdf=|usr=}}
+{{tp|p=35184750|t=2022. Systematic comparison of published host gene expression signatures for bacterial/viral discrimination.|pdf=|usr=}}
+{{tp|p=34001247|t=2021. An atlas connecting shared genetic architecture of human diseases and molecular phenotypes provides insight into COVID-19 susceptibility.|pdf=|usr=}}
+{{tp|p=34350693|t=2021. Comprehensive investigation of RNA-sequencing dataset reveals the hub genes and molecular mechanisms of coronavirus disease 2019 acute respiratory distress syndrome.|pdf=|usr=}}
+{{tp|p=34675627|t=2021. Construction and Investigation of Competing Endogenous RNA Networks and Candidate Genes Involved in SARS-CoV-2 Infection.|pdf=|usr=}}
+{{tp|p=34623759|t=2021. New insights into genetic characteristics between multiple myeloma and COVID-19: An integrative bioinformatics analysis of gene expression omnibus microarray and the cancer genome atlas data.|pdf=|usr=}}
+{{tp|p=35269564|t=2022. COVIDomics: The Proteomic and Metabolomic Signatures of COVID-19.|pdf=|usr=}}
+{{tp|p=33207699|t=2020. Large-Scale Plasma Analysis Revealed New Mechanisms and Molecules Associated with the Host Response to SARS-CoV-2.|pdf=|usr=}}
+{{tp|p=32236644|t=2020. Identification of a potential mechanism of acute kidney injury during the COVID-19 outbreak: a study based on single-cell transcriptome analysis.|pdf=|usr=}}
+{{tp|p=34522848|t=2021. An interactive single cell web portal identifies gene and cell networks in COVID-19 host responses.|pdf=|usr=}}
+{{tp|p=34487344|t=2021. A pathway map of signaling events triggered upon SARS-CoV infection.|pdf=|usr=}}
+{{tp|p=33730024|t=2021. Single-cell longitudinal analysis of SARS-CoV-2 infection in human airway epithelium identifies target cells, alterations in gene expression, and cell state changes.|pdf=|usr=}}
+{{tp|p=33901166|t=2021. The first few days of a SARS-CoV-2 infection viewed at single-cell resolution.|pdf=|usr=}}
+{{tp|p=34260589|t=2021. COVIDomic: A multi-modal cloud-based platform for identification of risk factors associated with COVID-19 severity.|pdf=|usr=}}
+{{tp|p=35468151|t=2022. Multi-omic analysis reveals enriched pathways associated with COVID-19 and COVID-19 severity.|pdf=|usr=}}
+{{tp|p=35390032|t=2022. Identification of host transcriptome-guided repurposable drugs for SARS-CoV-1 infections and their validation with SARS-CoV-2 infections by using the integrated bioinformatics approaches.|pdf=|usr=}}
+{{tp|p=35085325|t=2022. Identification of potentially anti-COVID-19 active drugs using the connectivity MAP.|pdf=|usr=}}
+{{tp|p=33082228|t=2020. Transcriptional and proteomic insights into the host response in fatal COVID-19 cases.|pdf=|usr=}}
+{{tp|p=35377064|t=2022. Differential transcriptomic landscapes of multiple organs from SARS-CoV-2 early infected rhesus macaques.|pdf=|usr=}}
+{{tp|p=32664949|t=2020. SARS-CoV-2 induces transcriptional signatures in human lung epithelial cells that promote lung fibrosis.|pdf=|usr=}}
+{{tp|p=34127904|t=2021. Network-based transcriptomic analysis identifies the genetic effect of COVID-19 to chronic kidney disease patients: A bioinformatics approach.|pdf=|usr=}}
+{{tp|p=32963239|t=2020. Consensus transcriptional regulatory networks of coronavirus-infected human cells.|pdf=|usr=}}
+{{tp|p=34031435|t=2021. Integrative web-based analysis of omics data for study of drugs against SARS-CoV-2.|pdf=|usr=}}
+{{tp|p=33782412|t=2021. Comprehensive transcriptomic analysis of COVID-19 blood, lung, and airway.|pdf=|usr=}}
+{{tp|p=33510359|t=2021. Meta-analysis of host transcriptional responses to SARS-CoV-2 infection reveals their manifestation in human tumors.|pdf=|usr=}}
+{{tp|p=34907210|t=2021. Identification of transcriptional regulatory network associated with response of host epithelial cells to SARS-CoV-2.|pdf=|usr=}}
+{{tp|p=34376762|t=2021. Comparative transcriptome analyses reveal genes associated with SARS-CoV-2 infection of human lung epithelial cells.|pdf=|usr=}}
+{{tp|p=33318519|t=2020. Gene expression network analysis provides potential targets against SARS-CoV-2.|pdf=|usr=}}
+{{tp|p=33863870|t=2021. COVID-19: complexity of disease severity revealed by systemic and localized single cell immune atlas.|pdf=|usr=}}
+{{tp|p=33859163|t=2021. Multi-platform omics analysis reveals molecular signature for COVID-19 pathogenesis, prognosis and drug target discovery.|pdf=|usr=}}
+{{tp|p=32670298|t=2020. Immune and Metabolic Signatures of COVID-19 Revealed by Transcriptomics Data Reuse.|pdf=|usr=}}
+{{tp|p=34557504|t=2021. Unraveling Risk Genes of COVID-19 by Multi-Omics Integrative Analyses.|pdf=|usr=}}
+{{tp|p=35047913|t=2021. The SIRAH-CoV-2 Initiative: A Coarse-Grained Simulations' Dataset of the SARS-CoV-2 Proteome.|pdf=|usr=}}
+{{tp|p=35531299|t=2022. The Intricacy of the Viral-Human Protein Interaction Networks: Resources, Data, and Analyses.|pdf=|usr=}}
+{{tp|p=33324374|t=2020. Comparative Transcriptome Analysis Reveals the Intensive Early Stage Responses of Host Cells to SARS-CoV-2 Infection.|pdf=|usr=}}
+{{tp|p=33585554|t=2020. SARS-CoV-2 Proteins Exploit Host's Genetic and Epigenetic Mediators for the Annexation of Key Host Signaling Pathways.|pdf=|usr=}}
+{{tp|p=34530086|t=2022. An overview of human proteins and genes involved in SARS-CoV-2 infection.|pdf=|usr=}}
+{{tp|p=33263093|t=2021. Gene expression profiling of corona virus microarray datasets to identify crucial targets in COVID-19 patients.|pdf=|usr=}}
+{{tp|p=34401607|t=2021. Systems level insights into the impact of airborne exposure on SARS-CoV-2 pathogenesis and COVID-19 outcome - A multi-omics big data study.|pdf=|usr=}}
+{{tp|p=33553808|t=2020. Bioinformatics analyses of significant genes, related pathways, and candidate diagnostic biomarkers and molecular targets in SARS-CoV-2/COVID-19.|pdf=|usr=}}
+{{tp|p=33809949|t=2021. A Resource for the Network Representation of Cell Perturbations Caused by SARS-CoV-2 Infection.|pdf=|usr=}}
+{{tp|p=34209818|t=2021. Toward a Coronavirus Knowledge Graph.|pdf=|usr=}}
+{{tp|p=35002537|t=2021. Identification of Differentially Expressed Genes in COVID-19 and Integrated Bioinformatics Analysis of Signaling Pathways.|pdf=|usr=}}
+{{tp|p=34001247|t=2021. An atlas connecting shared genetic architecture of human diseases and molecular phenotypes provides insight into COVID-19 susceptibility.|pdf=|usr=}}
+{{tp|p=34350693|t=2021. Comprehensive investigation of RNA-sequencing dataset reveals the hub genes and molecular mechanisms of coronavirus disease 2019 acute respiratory distress syndrome.|pdf=|usr=}}
+{{tp|p=34675627|t=2021. Construction and Investigation of Competing Endogenous RNA Networks and Candidate Genes Involved in SARS-CoV-2 Infection.|pdf=|usr=}}
+{{tp|p=34623759|t=2021. New insights into genetic characteristics between multiple myeloma and COVID-19: An integrative bioinformatics analysis of gene expression omnibus microarray and the cancer genome atlas data.|pdf=|usr=}}
+{{tp|p=35269564|t=2022. COVIDomics: The Proteomic and Metabolomic Signatures of COVID-19.|pdf=|usr=}}
+{{tp|p=33207699|t=2020. Large-Scale Plasma Analysis Revealed New Mechanisms and Molecules Associated with the Host Response to SARS-CoV-2.|pdf=|usr=}}
+{{tp|p=32236644|t=2020. Identification of a potential mechanism of acute kidney injury during the COVID-19 outbreak: a study based on single-cell transcriptome analysis.|pdf=|usr=}}
+{{tp|p=34522848|t=2021. An interactive single cell web portal identifies gene and cell networks in COVID-19 host responses.|pdf=|usr=}}
+{{tp|p=34487344|t=2021. A pathway map of signaling events triggered upon SARS-CoV infection.|pdf=|usr=}}
+{{tp|p=32806897|t=2020. Integrative Modeling of Quantitative Plasma Lipoprotein, Metabolic, and Amino Acid Data Reveals a Multiorgan Pathological Signature of SARS-CoV-2 Infection.|pdf=|usr=}}
+{{tp|p=35150462|t=2022. Thrombosis pathways in COVID-19 vs. influenza-associated ARDS: A targeted proteomics approach.|pdf=|usr=}}
+{{tp|p=33413422|t=2021. Transcriptome of nasopharyngeal samples from COVID-19 patients and a comparative analysis with other SARS-CoV-2 infection models reveal disparate host responses against SARS-CoV-2.|pdf=|usr=}}
+{{tp|p=34876157|t=2021. Multi-omics approach to COVID-19: a domain-based literature review.|pdf=|usr=}}
+{{tp|p=32811513|t=2020. The current landscape of coronavirus-host protein-protein interactions.|pdf=|usr=}}
+{{tp|p=34319784|t=2021. Kinetic Multi-omic Analysis of Responses to SARS-CoV-2 Infection in a Model of Severe COVID-19.|pdf=|usr=}}
+{{tp|p=34106002|t=2021. Viral and Host Transcriptomes in SARS-CoV-2-Infected Human Lung Cells.|pdf=|usr=}}
+{{tp|p=35530264|t=2022. Plasma Proteomics of COVID-19-Associated Cardiovascular Complications: Implications for Pathophysiology and Therapeutics.|pdf=|usr=}}
+{{tp|p=34254058|t=2021. Cov-MS: A Community-Based Template Assay for Mass-Spectrometry-Based Protein Detection in SARS-CoV-2 Patients.|pdf=|usr=}}
+{{tp|p=35511435|t=2022. Single-cell transcriptomic profiling of lung endothelial cells identifies dynamic inflammatory and regenerative subpopulations.|pdf=|usr=}}
+{{tp|p=35175937|t=2022. Temporal transcriptomic analysis using TrendCatcher identifies early and persistent neutrophil activation in severe COVID-19.|pdf=|usr=}}
+{{tp|p=34618691|t=2021. Human nasal wash RNA-Seq reveals distinct cell-specific innate immune responses in influenza versus SARS-CoV-2.|pdf=|usr=}}
+{{tp|p=33284134|t=2021. Metabolic reprogramming and epigenetic changes of vital organs in SARS-CoV-2-induced systemic toxicity.|pdf=|usr=}}
+{{tp|p=34642644|t=2021. A Pilot Study of Urine Proteomics in COVID-19-Associated Acute Kidney Injury.|pdf=|usr=}}
+{{tp|p=35368565|t=2022. Single-Cell RNA Sequencing of Urinary Cells Reveals Distinct Cellular Diversity in COVID-19-Associated AKI.|pdf=|usr=}}
+{{tp|p=35110370|t=2022. Proteomic landscape of SARS-CoV-2- and MERS-CoV-infected primary human renal epithelial cells.|pdf=|usr=}}
+{{tp|p=34425963|t=2021. Acute Kidney Injury in Severe COVID-19 Has Similarities to Sepsis-Associated Kidney Injury: A Multi-Omics Study.|pdf=|usr=}}
+{{tp|p=35604092|t=2022. The Translational Landscape of SARS-CoV-2-infected Cells Reveals Suppression of Innate Immune Genes.|pdf=|usr=}}
+{{tp|p=34766152|t=2021. Application of omics technology to combat the COVID-19 pandemic.|pdf=|usr=}}
+{{tp|p=33833618|t=2021. Whole-Transcriptome RNA Sequencing Reveals Significant Differentially Expressed mRNAs, miRNAs, and lncRNAs and Related Regulating Biological Pathways in the Peripheral Blood of COVID-19 Patients.|pdf=|usr=}}
+{{tp|p=35547845|t=2022. Whole Genome DNA and RNA Sequencing of Whole Blood Elucidates the Genetic Architecture of Gene Expression Underlying a Wide Range of Diseases.|pdf=|usr=}}
+{{tp|p=33758879|t=2021. The COVIDome Explorer Researcher Portal.|pdf=|usr=}}
+{{tp|p=32743614|t=2020. Large-scale Multi-omic Analysis of COVID-19 Severity.|pdf=|usr=}}
+{{tp|p=33398303|t=2020. An atlas connecting shared genetic architecture of human diseases and molecular phenotypes provides insight into COVID-19 susceptibility.|pdf=|usr=}}
+{{tp|p=33435351|t=2021. Comprehensive Meta-Analysis of COVID-19 Global Metabolomics Datasets.|pdf=|usr=}}
+{{tp|p=34153417|t=2021. Construction of an autophagy interaction network based on competitive endogenous RNA reveals the key pathways and central genes of SARS-CoV-2 infection in vivo.|pdf=|usr=}}
+{{tp|p=34118193|t=2021. Global analysis of protein-RNA interactions in SARS-CoV-2-infected cells reveals key regulators of infection.|pdf=|usr=}}
+{{tp|p=33989516|t=2021. The SARS-CoV-2 RNA interactome.|pdf=|usr=}}
+{{tp|p=35504488|t=2022. Mapping molecular gene signatures mediated by SARS-COV-2 and large-scale and genome-wide transcriptomics comparative analysis among respiratory viruses of medical importance.|pdf=|usr=}}
+{{tp|p=34400346|t=2021. Proteomic Signature of Host Response to SARS-CoV-2 Infection in the Nasopharynx.|pdf=|usr=}}
+{{tp|p=34089862|t=2021. Proteomics-Based Insights Into the SARS-CoV-2-Mediated COVID-19 Pandemic: A Review of the First Year of Research.|pdf=|usr=}}
+{{tp|p=34664389|t=2021. COVID19 Disease Map, a computational knowledge repository of virus-host interaction mechanisms.|pdf=|usr=}}
+{{tp|p=35300459|t=2022. Transcriptogram analysis reveals relationship between viral titer and gene sets responses during Corona-virus infection.|pdf=|usr=}}
+{{tp|p=34876692|t=2021. A single-cell transcriptomic landscape of the lungs of patients with COVID-19.|pdf=|usr=}}
+{{tp|p=34315893|t=2021. Single-cell transcriptome of bronchoalveolar lavage fluid reveals sequential change of macrophages during SARS-CoV-2 infection in ferrets.|pdf=|usr=}}
+{{tp|p=34315889|t=2021. The trans-omics landscape of COVID-19.|pdf=|usr=}}
+{{tp|p=33597532|t=2021. Dysregulated transcriptional responses to SARS-CoV-2 in the periphery.|pdf=|usr=}}
+{{tp|p=34381043|t=2021. Temporal omics analysis in Syrian hamsters unravel cellular effector responses to moderate COVID-19.|pdf=|usr=}}
+{{tp|p=33879890|t=2021. Single-cell multi-omics analysis of the immune response in COVID-19.|pdf=|usr=}}
+{{tp|p=34876996|t=2021. Post-mortem tissue proteomics reveals the pathogenesis of multi-organ injuries of COVID-19.|pdf=|usr=}}
+{{tp|p=33915569|t=2021. COVID-19 tissue atlases reveal SARS-CoV-2 pathology and cellular targets.|pdf=|usr=}}
+{{tp|p=33915568|t=2021. A molecular single-cell lung atlas of lethal COVID-19.|pdf=|usr=}}
+{{tp|p=34237774|t=2021. Mapping the human genetic architecture of COVID-19.|pdf=|usr=}}
+{{tp|p=33274348|t=2020. CovMulNet19, Integrating Proteins, Diseases, Drugs, and Symptoms: A Network Medicine Approach to COVID-19.|pdf=|usr=}}
+{{tp|p=34031419|t=2021. Comparative transcriptome analysis reveals key epigenetic targets in SARS-CoV-2 infection.|pdf=|usr=}}
+{{tp|p=35100418|t=2022. AggMapNet: enhanced and explainable low-sample omics deep learning with feature-aggregated multi-channel networks.|pdf=|usr=}}
+{{tp|p=34761257|t=2022. SCoV2-MD: a database for the dynamics of the SARS-CoV-2 proteome and variant impact predictions.|pdf=|usr=}}
+{{tp|p=34718748|t=2022. MVIP: multi-omics portal of viral infection.|pdf=|usr=}}
+{{tp|p=34634820|t=2022. SCovid: single-cell atlases for exposing molecular characteristics of COVID-19 across 10 human tissues.|pdf=|usr=}}
+{{tp|p=34554255|t=2022. COVID19db: a comprehensive database platform to discover potential drugs and targets of COVID-19 at whole transcriptomic scale.|pdf=|usr=}}
+{{tp|p=35557984|t=2022. Weighted Gene Co-Expression Network Analysis to Identify Potential Biological Processes and Key Genes in COVID-19-Related Stroke.|pdf=|usr=}}
+{{tp|p=34457122|t=2021. Comprehensive Analysis of the Systemic Transcriptomic Alternations and Inflammatory Response during the Occurrence and Progress of COVID-19.|pdf=|usr=}}
+{{tp|p=32667665|t=2020. Transcriptome-based drug repositioning for coronavirus disease 2019 (COVID-19).|pdf=|usr=}}
+{{tp|p=33842903|t=2021. Secondary analysis of transcriptomes of SARS-CoV-2 infection models to characterize COVID-19.|pdf=|usr=}}
+{{tp|p=33868814|t=2021. Multi-schema computational prediction of the comprehensive SARS-CoV-2 vs. human interactome.|pdf=|usr=}}
+{{tp|p=32566414|t=2020. Host transcriptome-guided drug repurposing for COVID-19 treatment: a meta-analysis based approach.|pdf=|usr=}}
+{{tp|p=33730024|t=2021. Single-cell longitudinal analysis of SARS-CoV-2 infection in human airway epithelium identifies target cells, alterations in gene expression, and cell state changes.|pdf=|usr=}}
+{{tp|p=33901166|t=2021. The first few days of a SARS-CoV-2 infection viewed at single-cell resolution.|pdf=|usr=}}
+{{tp|p=34260589|t=2021. COVIDomic: A multi-modal cloud-based platform for identification of risk factors associated with COVID-19 severity.|pdf=|usr=}}
+{{tp|p=35468151|t=2022. Multi-omic analysis reveals enriched pathways associated with COVID-19 and COVID-19 severity.|pdf=|usr=}}
+{{tp|p=35390032|t=2022. Identification of host transcriptome-guided repurposable drugs for SARS-CoV-1 infections and their validation with SARS-CoV-2 infections by using the integrated bioinformatics approaches.|pdf=|usr=}}
+{{tp|p=35085325|t=2022. Identification of potentially anti-COVID-19 active drugs using the connectivity MAP.|pdf=|usr=}}
+{{tp|p=33082228|t=2020. Transcriptional and proteomic insights into the host response in fatal COVID-19 cases.|pdf=|usr=}}
+{{tp|p=35377064|t=2022. Differential transcriptomic landscapes of multiple organs from SARS-CoV-2 early infected rhesus macaques.|pdf=|usr=}}
+{{tp|p=32664949|t=2020. SARS-CoV-2 induces transcriptional signatures in human lung epithelial cells that promote lung fibrosis.|pdf=|usr=}}
+{{tp|p=34127904|t=2021. Network-based transcriptomic analysis identifies the genetic effect of COVID-19 to chronic kidney disease patients: A bioinformatics approach.|pdf=|usr=}}
+{{tp|p=32963239|t=2020. Consensus transcriptional regulatory networks of coronavirus-infected human cells.|pdf=|usr=}}
+{{tp|p=34031435|t=2021. Integrative web-based analysis of omics data for study of drugs against SARS-CoV-2.|pdf=|usr=}}
+{{tp|p=33782412|t=2021. Comprehensive transcriptomic analysis of COVID-19 blood, lung, and airway.|pdf=|usr=}}
+{{tp|p=34907210|t=2021. Identification of transcriptional regulatory network associated with response of ho
+{{tp|p=34376762|t=2021. Comparative transcriptome analyses reveal genes associated with SARS-CoV-2 infection of human lung epithelial cells.|pdf=|usr=}}
+{{tp|p=33318519|t=2020. Gene expression network analysis provides potential targets against SARS-CoV-2.|pdf=|usr=}}
+{{tp|p=33863870|t=2021. COVID-19: complexity of disease severity revealed by systemic and localized single cell immune atlas.|pdf=|usr=}}
+{{tp|p=33859163|t=2021. Multi-platform omics analysis reveals molecular signature for COVID-19 pathogenesis, prognosis and drug target discovery.|pdf=|usr=}}
+{{tp|p=33846224|t=2021. Longitudinal Peripheral Blood Transcriptional Analysis Reveals Molecular Signatures of Disease Progression in COVID-19 Patients.|pdf=|usr=}}
+{{tp|p=33813307|t=2021. A SARS-CoV-2 -human metalloproteome interaction map.|pdf=|usr=}}
+{{tp|p=33735949|t=2021. OverCOVID: an integrative web portal for SARS-CoV-2 bioinformatics resources.|pdf=|usr=}}
+{{tp|p=34080738|t=2021. Critical COVID-19 is associated with distinct leukocyte phenotypes and transcriptome patterns.|pdf=|usr=}}
+{{tp|p=33162722|t=2020. A comprehensive overview of proteomics approach for COVID 19: new perspectives in target therapy strategies.|pdf=|usr=}}
+{{tp|p=34550702|t=2021. Discovery Proteomics for COVID-19: Where We Are Now.|pdf=|usr=}}
+{{tp|p=34379420|t=2021. A Multi-omics Longitudinal Study Reveals Alteration of the Leukocyte Activation Pathway in COVID-19 Patients.|pdf=|usr=}}
+{{tp|p=33666082|t=2021. Ubiquitin-Modified Proteome of SARS-CoV-2-Infected Host Cells Reveals Insights into Virus-Host Interaction and Pathogenesis.|pdf=|usr=}}
+{{tp|p=34080435|t=2021. Proteomic Analysis Identifies Prolonged Disturbances in Pathways Related to Cholesterol Metabolism and Myocardium Function in the COVID-19 Recovery Stage.|pdf=|usr=}}
+{{tp|p=34077217|t=2021. Mass Spectrometric Analysis of Urine from COVID-19 Patients for Detection of SARS-CoV-2 Viral Antigen and to Study Host Response.|pdf=|usr=}}
+{{tp|p=33464917|t=2021. Proteomic Approaches to Study SARS-CoV-2 Biology and COVID-19 Pathology.|pdf=|usr=}}
+{{tp|p=33426872|t=2021. Role of Multiomics Data to Understand Host-Pathogen Interactions in COVID-19 Pathogenesis.|pdf=|usr=}}
+{{tp|p=33103435|t=2020. Computational Identification of Human Biological Processes and Protein Sequence Motifs Putatively Targeted by SARS-CoV-2 Proteins Using Protein-Protein Interaction Networks.|pdf=|usr=}}
+{{tp|p=32654489|t=2020. Repurpose Open Data to Discover Therapeutics for COVID-19 Using Deep Learning.|pdf=|usr=}}
+{{tp|p=33245774|t=2021. PAGER-CoV: a comprehensive collection of pathways, annotated gene-lists and gene signatures for coronavirus disease studies.|pdf=|usr=}}
+{{tp|p=35511057|t=2022. deepHPI: a comprehensive deep learning platform for accurate prediction and visualization of host-pathogen protein-protein interactions.|pdf=|usr=}}
--to be shown-
-==All relevant papers==
+{{tp|p=33147627|t=2021. Computational strategies to combat COVID-19: useful tools to accelerate SARS-CoV-2 and coronavirus research.|pdf=|usr=}}
+{{tp|p=32715315|t=2021. Virus-CKB: an integrated bioinformatics platform and analysis resource for COVID-19 research.|pdf=|usr=}}
+{{tp|p=34901953|t=2021. A call for discovery: Re-envisioning The Cancer Genome Atlas as a blueprint for a TCGA2.0-The COVID-19 Genome Atlas.|pdf=|usr=}}
+{{tp|p=34181169|t=2021. SARS-CoV-2 signaling pathway map: A functional landscape of molecular mechanisms in COVID-19.|pdf=|usr=}}
+{{tp|p=33070389|t=2021. The BioGRID database: A comprehensive biomedical resource of curated protein, genetic, and chemical interactions.|pdf=|usr=}}
+{{tp|p=32371892|t=2020. COVID-19 Disease Map, building a computational repository of SARS-CoV-2 virus-host interaction mechanisms.|pdf=|usr=}}
+{{tp|p=32533075|t=2020. CIDO, a community-based ontology for coronavirus disease knowledge and data integration, sharing, and analysis.|pdf=|usr=}}
+{{tp|p=33903708|t=2021. The microRNA analysis portal is a next-generation tool for exploring and analyzing miRNA-focused data in the literature.|pdf=|usr=}}
+{{tp|p=35594018|t=2022. Databases, Knowledgebases, and Software Tools for Virus Informatics.|pdf=|usr=}}
+{{tp|p=33843398|t=2021. Knowledge graphs and their applications in drug discovery.|pdf=|usr=}}
+{{tp|p=34750573|t=2021. COVID-19 lung atlas.|pdf=|usr=}}
+{{tp|p=32908256|t=2020. Exploring the structural distribution of genetic variation in SARS-CoV-2 with the COVID-3D online resource.|pdf=|usr=}}
+{{tp|p=35652743|t=2022. The Karolinska KI/K COVID-19 Immune Atlas: An open resource for immunological research and educational purposes.|pdf=|usr=}}
+{{tp|p=35612186|t=2022. CovidGraph: Integrating COVID-19 Data.|pdf=|usr=}}
+{{tp|p=33136473|t=2020. A Web-Based Platform on Coronavirus Disease-19 to Maintain Predicted Diagnostic, Drug, and Vaccine Candidates.|pdf=|usr=}}
+ related
+*[Multiomic atlas with functional stratification and developmental dynamics of zebrafish cis-regulatory elements    https://www.nature.com/articles/s41588-022-01089-w.pdf]
+==Other interesting papers==
+'''these were retrieved by the filtered omics search1 and two and they seem to be important'''
+{{tp|p=35310032|t=2022. Integrating Metabolomics and Network Pharmacology to Explore the Protective Effect of Ginsenoside Re against Radiotherapy Injury in Mice.|pdf=|usr=}}
+{{tp|p=35184750|t=2022. Systematic comparison of published host gene expression signatures for bacterial/viral discrimination.|pdf=|usr=}}
+{{tp|p=34403366|t=2021. Self-sustaining IL-8 loops drive a prothrombotic neutrophil phenotype in severe COVID-19.|pdf=|usr=}}
+{{tp|p=32903321|t=2020. Localization of Cell Receptor-Related Genes of SARS-CoV-2 in the Kidney through Single-Cell Transcriptome Analysis.|pdf=|usr=}}
+{{tp|p=35339689|t=2022. Key benefits of dexamethasone and antibody treatment in COVID-19 hamster models revealed by single-cell transcriptomics.|pdf=|usr=}}
+{{tp|p=34312385|t=2021. Single-cell RNA sequencing reveals ex vivo signatures of SARS-CoV-2-reactive T cells through 'reverse phenotyping'.|pdf=|usr=}}
+{{tp|p=34262047|t=2021. Chronic lung diseases are associated with gene expression programs favoring SARS-CoV-2 entry and severity.|pdf=|usr=}}
+{{tp|p=34116393|t=2021. Magnesium treatment on methylation changes of transmembrane serine protease 2 (TMPRSS2).|pdf=|usr=}}
+{{tp|p=33521378|t=2021. Hypoxia-inducible factor (HIF): The link between obesity and COVID-19.|pdf=|usr=}}
+{{tp|p=33991451|t=2021. Hypoxia induces expression of angiotensin-converting enzyme II in alveolar epithelial cells: Implications for the pathogenesis of acute lung injury in COVID-19.|pdf=|usr=}}
+{{tp|p=34673800|t=2021. Klotho deficiency intensifies hypoxia-induced expression of IFN-alpha/beta through upregulation of RIG-I in kidneys.|pdf=|usr=}}
+{{tp|p=33661927|t=2021. Hypoxia-induced inflammation: Profiling the first 24-hour posthypoxic plasma and central nervous system changes.|pdf=|usr=}}
+{{tp|p=34108245|t=2021. HIF-1alpha is a negative regulator of interferon regulatory factors: Implications for interferon production by hypoxic monocytes.|pdf=|usr=}}
+st epithelial cells to SARS-CoV-2.|pdf=|usr=}}
+{{tp|p=35502829|t=2022. Bees can be trained to identify SARS-CoV-2 infected samples.|pdf=|usr=}}
+{{tp|p=35543533|t=2022. Impaired exercise capacity in post-COVID syndrome: the role of VWF-ADAMTS13 axis.|pdf=|usr=}}
+{{tp|p=35496775|t=2022. Cognitive deficits and memory impairments after COVID-19 (Covishield) vaccination.|pdf=|usr=}}
+{{tp|p=35211628|t=2022. 29 m(6)A-RNA Methylation (Epitranscriptomic) Regulators Are Regulated in 41 Diseases including Atherosclerosis and Tumors Potentially via ROS Regulation - 102 Transcriptomic Dataset Analyses.|pdf=|usr=}}
+{{tp|p=33307139|t=2021. Total infectomes of 162 SARS-CoV-2 cases using meta-transcriptomic sequencing.|pdf=|usr=}}
+{{tp|p=35291496|t=2022. SARS-CoV-2 infecting endothelial cells, biochemical alterations, autopsy findings and outcomes in COVID-19, suggest role of hypoxia-inducible factor-1.|pdf=|usr=}}
+{{tp|p=33913550|t=2021. SARS-CoV-2 ORF9b antagonizes type I and III interferons by targeting multiple components of the RIG-I/MDA-5-MAVS, TLR3-TRIF, and cGAS-STING signaling pathways.|pdf=|usr=}}
+{{tp|p=35064792|t=2022. Disturbed lipid and amino acid metabolisms in COVID-19 patients.|pdf=|usr=}}
+{{tp|p=34626364|t=2022. Activation of STAT3 signaling pathway in the kidney of COVID-19 patients.|pdf=|usr=}}
+{{tp|p=33724837|t=2021. Systemic Perturbations in Amine and Kynurenine Metabolism Associated with Acute SARS-CoV-2 Infection and Inflammatory Cytokine Responses.|pdf=|usr=}}
 {{tp|p=34920080|t=2022. The spike protein of SARS-CoV-2 induces heme oxygenase-1: Pathophysiologic implications.|pdf=|usr=}}
+{{tp|p=34835015|t=2021. SARS-CoV-2 Spike Protein S1-Mediated Endothelial Injury and Pro-Inflammatory State Is Amplified by Dihydrotestosterone and Prevented by Mineralocorticoid Antagonism.|pdf=|usr=}}
+{{tp|p=33991451|t=2021. Hypoxia induces expression of angiotensin-converting enzyme II in alveolar epithelial cells: Implications for the pathogenesis of acute lung injury in COVID-19.|pdf=|usr=}}
+{{tp|p=34673800|t=2021. Klotho deficiency intensifies hypoxia-induced expression of IFN-alpha/beta through upregulation of RIG-I in kidneys.|pdf=|usr=}}
+{{tp|p=33661927|t=2021. Hypoxia-induced inflammation: Profiling the first 24-hour posthypoxic plasma and central nervous system changes.|pdf=|usr=}}
+{{tp|p=34108245|t=2021. HIF-1alpha is a negative regulator of interferon regulatory factors: Implications for interferon production by hypoxic monocytes.|pdf=|usr=}}
+{{tp|p=33760431|t=2020. Pathology of COVID-19: Atlas|pdf=|usr=}}
+{{tp|p=35195253|t=2022. A central role for amyloid fibrin microclots in long COVID/PASC: origins and therapeutic implications.|pdf=|usr=}}
+{{tp|p=32685484|t=2020. Identification of COVID-19 Infection-Related Human Genes Based on a Random Walk Model in a Virus-Human Protein Interaction Network.|pdf=|usr=}}
+{{tp|p=33269352|t=2020. A monoclonal antibody against staphylococcal enterotoxin B superantigen inhibits SARS-CoV-2 entry in vitro.|pdf=|usr=}}
+{{tp|p=32511374|t=2020. An insertion unique to SARS-CoV-2 exhibits superantigenic character strengthened by recent mutations.|pdf=|usr=}}
+{{tp|p=34328172|t=2021. SARS-CoV-2 spike protein S1 induces fibrin(ogen) resistant to fibrinolysis: implications for microclot formation in COVID-19.|pdf=|usr=}}
+{{tp|p=35307504|t=2022. Intranasal delivery of SARS-CoV-2 spike protein is sufficient to cause olfactory damage, inflammation and olfactory dysfunction in zebrafish.|pdf=|usr=}}
+{{tp|p=34382087|t=2021. Data-driven identification of SARS-CoV-2 subpopulations using PhenoGraph and binary-coded genomic data.|pdf=|usr=}}
+{{tp|p=33993214|t=2021. Structure-based drug repurposing against COVID-19 and emerging infectious diseases: methods, resources and discoveries.|pdf=|usr=}}
+{{tp|p=33636127|t=2021. In vivo structural characterization of the SARS-CoV-2 RNA genome identifies host proteins vulnerable to repurposed drugs.|pdf=|usr=}}
+{{tp|p=32877699|t=2020. Loss of Bcl-6-Expressing T Follicular Helper Cells and Germinal Centers in COVID-19.|pdf=|usr=}}
+{{tp|p=32526206|t=2020. SARS-CoV-2 Reverse Genetics Reveals a Variable Infection Gradient in the Respiratory Tract.|pdf=|usr=}}
+{{tp|p=35273357|t=2022. Histones released by NETosis enhance the infectivity of SARS-CoV-2 by bridging the spike protein subunit 2 and sialic acid on host cells.|pdf=|usr=}}
+{{tp|p=35235832|t=2022. SARS-CoV-2 Nsp13 encodes for an HLA-E-stabilizing peptide that abrogates inhibition of NKG2A-expressing NK cells.|pdf=|usr=}}
+{{tp|p=33163980|t=2020. Pharmacological Inhibition of Acid Sphingomyelinase Prevents Uptake of SARS-CoV-2 by Epithelial Cells.|pdf=|usr=}}
+{{tp|p=34749737|t=2021. The effect of vitamin D, magnesium and zinc supplements on interferon signaling pathways and their relationship to control SARS-CoV-2 infection.|pdf=|usr=}}
+{{tp|p=34457214|t=2021. An overview of potential inhibitors targeting non-structural proteins 3 (PL(pro) and Mac1) and 5 (3CL(pro)/M(pro)) of SARS-CoV-2.|pdf=|usr=}}
+{{tp|p=34759959|t=2021. Prioritisation of Candidate Genes Underpinning COVID-19 Host Genetic Traits Based on High-Resolution 3D Chromosomal Topology.|pdf=|usr=}}
+{{tp|p=34423108|t=2021. A network-based systems biology approach for identification of shared Gene signatures between male and female in COVID-19 datasets.|pdf=|usr=}}
+{{tp|p=34598736|t=2021. A potential role for cannabichromene in modulating TRP channels during acute respiratory distress syndrome.|pdf=|usr=}}
+{{tp|p=34904376|t=2022. The atomic portrait of SARS-CoV-2 as captured by cryo-electron microscopy.|pdf=|usr=}}
+{{tp|p=33295606|t=2020. SARS-CoV-2 spike protein binds to bacterial lipopolysaccharide and boosts proinflammatory activity.|pdf=|usr=}}
+{{tp|p=35420442|t=2022. Single-Cell Landscape of Lungs Reveals Key Role of Neutrophil-Mediated Immunopathology during Lethal SARS-CoV-2 Infection.|pdf=|usr=}}
+{{tp|p=31826992|t=2020. Molecular Mechanism for Antibody-Dependent Enhancement of Coronavirus Entry.|pdf=|usr=}}
+{{tp|p=34189540|t=2021. Common and rare variant analyses combined with single-cell multiomics reveal cell-type-specific molecular mechanisms of COVID-19 severity.|pdf=|usr=}}
+{{tp|p=34184910|t=2021. Molecular Mechanisms of the Toll-Like Receptor, STING, MAVS, Inflammasome, and Interferon Pathways.|pdf=|usr=}}
+{{tp|p=34788328|t=2021. Angiotensin II receptor I auto-antibodies following SARS-CoV-2 infection.|pdf=|usr=}}
+{{tp|p=34582497|t=2021. Drug repurposing for COVID-19 based on an integrative meta-analysis of SARS-CoV-2 induced gene signature in human airway epithelium.|pdf=|usr=}}
+{{tp|p=33203681|t=2020. Global analysis of more than 50,000 SARS-CoV-2 genomes reveals epistasis between eight viral genes.|pdf=|usr=}}
+{{tp|p=33314005|t=2021. Host metabolism dysregulation and cell tropism identification in human airway and alveolar organoids upon SARS-CoV-2 infection.|pdf=|usr=}}
+{{tp|p=32671793|t=2020. Single-cell analysis reveals bronchoalveolar epithelial dysfunction in COVID-19 patients.|pdf=|usr=}}
+{{tp|p=33970408|t=2021. Cystic fibrosis improves COVID-19 survival and provides clues for treatment of SARS-CoV-2.|pdf=|usr=}}
+{{tp|p=33064832|t=2021. Commonalities Between COVID-19 and Radiation Injury.|pdf=|usr=}}
+{{tp|p=34458775|t=2021. The chemical biology of coronavirus host-cell interactions.|pdf=|usr=}}
+{{tp|p=34193418|t=2021. Identification of SARS-CoV-2-induced pathways reveals drug repurposing strategies.|pdf=|usr=}}
+{{tp|p=34045524|t=2021. Dynamic changes in gene-to-gene regulatory networks in response to SARS-CoV-2 infection.|pdf=|usr=}}
+{{tp|p=33257774|t=2020. Investigation of COVID-19 comorbidities reveals genes and pathways coincident with the SARS-CoV-2 viral disease.|pdf=|usr=}}
+{{tp|p=35632517|t=2022. The Existence of at Least Three Genomic Signature Patterns and at Least Seven Subtypes of COVID-19 and the End of the Disease.|pdf=|usr=}}
+{{tp|p=35632715|t=2022. The International Virus Bioinformatics Meeting 2022.|pdf=|usr=}}
+{{tp|p=34696455|t=2021. Spike Proteins of SARS-CoV-2 Induce Pathological Changes in Molecular Delivery and Metabolic Function in the Brain Endothelial Cells.|pdf=|usr=}}
+{{tp|p=34580855|t=2022. Hydroxychloroquine inhibits proteolytic processing of endogenous TLR7 protein in human primary plasmacytoid dendritic cells.|pdf=|usr=}}
+{{tp|p=32908257|t=2020. Exploring the coronavirus pandemic with the WashU Virus Genome Browser.|pdf=|usr=}}
+{{tp|p=32398875|t=2020. Single-cell landscape of bronchoalveolar immune cells in patients with COVID-19.|pdf=|usr=}}
+==Full Dataset==
+''the two collections above are the most on-topic results. there were much more items of covid interest retrieved. anything e.g. about 2000 of 10000 primary results including the above contents will be shown here, the above items have been subtracted"
+{{tp|p=31744152|t=2019. A Multi-Omics Study of Chicken Infected by Nephropathogenic Infectious Bronchitis Virus.|pdf=|usr=}}
+{{tp|p=31776274|t=2020. Nucleocapsid Protein Recruitment to Replication-Transcription Complexes Plays a Crucial Role in Coronaviral Life Cycle.|pdf=|usr=}}
+{{tp|p=32071427|t=2020. Virus against virus: a potential treatment for 2019-nCov (SARS-CoV-2) and other RNA viruses.|pdf=|usr=}}
+{{tp|p=32102777|t=2020. The 2019 novel coronavirus resource.|pdf=|usr=}}
+{{tp|p=32142596|t=2020. Machine Learning, COVID-19 (2019-nCoV), and multi-OMICS.|pdf=|usr=}}
+{{tp|p=32167747|t=2020. Evidence of the COVID-19 Virus Targeting the CNS: Tissue Distribution, Host-Virus Interaction, and Proposed Neurotropic Mechanisms.|pdf=|usr=}}
+{{tp|p=32188729|t=2020. Coronavirus Endoribonuclease and Deubiquitinating Interferon Antagonists Differentially Modulate the Host Response during Replication in Macrophages.|pdf=|usr=}}
+{{tp|p=32194980|t=2020. Network-based drug repurposing for novel coronavirus 2019-nCoV/SARS-CoV-2.|pdf=|usr=}}
+{{tp|p=32199615|t=2020. Single cell RNA sequencing of 13 human tissues identify cell types and receptors of human coronaviruses.|pdf=|usr=}}
+{{tp|p=32218151|t=2020. Structural Genomics of SARS-CoV-2 Indicates Evolutionary Conserved Functional Regions of Viral Proteins.|pdf=|usr=}}
+{{tp|p=32223537|t=2020. Competing endogenous RNA network profiling reveals novel host dependency factors required for MERS-CoV propagation.|pdf=|usr=}}
+{{tp|p=32227090|t=2020. The ACE2 expression in human heart indicates new potential mechanism of heart injury among patients infected with SARS-CoV-2.|pdf=|usr=}}
+{{tp|p=32228226|t=2020. Transcriptomic characteristics of bronchoalveolar lavage fluid and peripheral blood mononuclear cells in COVID-19 patients.|pdf=|usr=}}
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+{{tp|p=33683626|t=2021. Divulging the Intricacies of Crosstalk Between NF-Kb and Nrf2-Keap1 Pathway in Neurological Complications of COVID-19.|pdf=|usr=}}
+{{tp|p=33684134|t=2021. A network-informed analysis of SARS-CoV-2 and hemophagocytic lymphohistiocytosis genes' interactions points to Neutrophil extracellular traps as mediators of thrombosis in COVID-19.|pdf=|usr=}}
+{{tp|p=33685230|t=2021. An immune epigenetic insight to COVID-19 infection.|pdf=|usr=}}
+{{tp|p=33685349|t=2021. SARS-CoV-2 infection in nonhuman primates alters the composition and functional activity of the gut microbiota.|pdf=|usr=}}
+{{tp|p=33688586|t=2021. In silico analysis of altered expression of long non-coding RNA in SARS-CoV-2 infected cells and their possible regulation by STAT1, STAT3 and interferon regulatory factors.|pdf=|usr=}}
+{{tp|p=33688631|t=2020. Urine proteome of COVID-19 patients.|pdf=|usr=}}
+{{tp|p=33688643|t=2021. Published Anti-SARS-CoV-2 In Vitro Hits Share Common Mechanisms of Action that Synergize with Antivirals.|pdf=|usr=}}
+{{tp|p=33691013|t=2021. Protein sequence models for prediction and comparative analysis of the SARS-CoV-2 -human interactome.|pdf=|usr=}}
+{{tp|p=33691138|t=2021. A trans-complementation system for SARS-CoV-2 recapitulates authentic viral replication without virulence.|pdf=|usr=}}
+{{tp|p=33691144|t=2021. Single-cell RNA sequencing reveals the sustained immune cell dysfunction in the pathogenesis of sepsis secondary to bacterial pneumonia.|pdf=|usr=}}
+{{tp|p=33691172|t=2021. Contribution of STAT3 to the pathogenesis of COVID-19.|pdf=|usr=}}
+{{tp|p=33691178|t=2021. First description of natural concomitant infection of avian nephritis virus and infectious bronchitis virus reveals exacerbated inflammatory response and renal damage in broiler chicks.|pdf=|usr=}}
+{{tp|p=33691247|t=2021. Temporal dynamics of the host molecular responses underlying severe COVID-19 progression and disease resolution.|pdf=|usr=}}
+{{tp|p=33693030|t=2021. Circulating Exosomes Are Strongly Involved in SARS-CoV-2 Infection.|pdf=|usr=}}
+{{tp|p=33693506|t=2021. COVID-19: disease pathways and gene expression changes predict methylprednisolone can improve outcome in severe cases.|pdf=|usr=}}
+{{tp|p=33704068|t=2021. Longitudinal proteomic profiling of dialysis patients with COVID-19 reveals markers of severity and predictors of death.|pdf=|usr=}}
+{{tp|p=33705542|t=2021. Human cardiosphere-derived stromal cells exposed to SARS-CoV-2 evolve into hyper-inflammatory/pro-fibrotic phenotype and produce infective viral particles depending on the levels of ACE2 receptor expression.|pdf=|usr=}}
+{{tp|p=33707411|t=2021. Metabolomic analyses of COVID-19 patients unravel stage-dependent and prognostic biomarkers.|pdf=|usr=}}
+{{tp|p=33710662|t=2021. Evidence for CAT gene being functionally involved in the susceptibility of COVID-19.|pdf=|usr=}}
+{{tp|p=33712587|t=2021. Shotgun transcriptome, spatial omics, and isothermal profiling of SARS-CoV-2 infection reveals unique host responses, viral diversification, and drug interactions.|pdf=|usr=}}
+{{tp|p=33712622|t=2021. Integrated cytokine and metabolite analysis reveals immunometabolic reprogramming in COVID-19 patients with therapeutic implications.|pdf=|usr=}}
+{{tp|p=33713114|t=2021. The Missing Expression Level-Evolutionary Rate Anticorrelation in Viruses Does Not Support Protein Function as a Main Constraint on Sequence Evolution.|pdf=|usr=}}
+{{tp|p=33713597|t=2021. The SARS-CoV-2 subgenome landscape and its novel regulatory features.|pdf=|usr=}}
+{{tp|p=33713619|t=2021. Time-resolved systems immunology reveals a late juncture linked to fatal COVID-19.|pdf=|usr=}}
+{{tp|p=33716737|t=2021. In silico Analyses of Immune System Protein Interactome Network, Single-Cell RNA Sequencing of Human Tissues, and Artificial Neural Networks Reveal Potential Therapeutic Targets for Drug Repurposing Against COVID-19.|pdf=|usr=}}
+{{tp|p=33717140|t=2021. Epigenetic Landscapes of Single-Cell Chromatin Accessibility and Transcriptomic Immune Profiles of T Cells in COVID-19 Patients.|pdf=|usr=}}
+{{tp|p=33718452|t=2021. Single-Cell Transcriptome Analysis Decipher New Potential Regulation Mechanism of ACE2 and NPs Signaling Among Heart Failure Patients Infected With SARS-CoV-2.|pdf=|usr=}}
+{{tp|p=33719350|t=2021. A Negative Feedback Model to Explain Regulation of SARS-CoV-2 Replication and Transcription.|pdf=|usr=}}
+{{tp|p=33720333|t=2021. Comparison of In Situ Hybridization, Immunohistochemistry, and Reverse Transcription-Droplet Digital Polymerase Chain Reaction for Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Testing in Tissue.|pdf=|usr=}}
+{{tp|p=33721144|t=2021. Longitudinal multi-omics transition associated with fatality in critically ill COVID-19 patients.|pdf=|usr=}}
+{{tp|p=33722935|t=2021. Subgenomic RNA identification in SARS-CoV-2 genomic sequencing data.|pdf=|usr=}}
+{{tp|p=33723254|t=2021. SARS-CoV-2 hijacks folate and one-carbon metabolism for viral replication.|pdf=|usr=}}
+{{tp|p=33724185|t=2021. Seroconversion stages COVID19 into distinct pathophysiological states.|pdf=|usr=}}
+{{tp|p=33725751|t=2021. Circular RNA-MicroRNA-MRNA interaction predictions in SARS-CoV-2 infection.|pdf=|usr=}}
+{{tp|p=33726831|t=2021. Exploration and validation of related hub gene expression during SARS-CoV-2 infection of human bronchial organoids.|pdf=|usr=}}
+{{tp|p=33727347|t=2021. Mechanism of Viral Glycoprotein Targeting by Membrane-Associated RING-CH Proteins.|pdf=|usr=}}
+{{tp|p=33728103|t=2021. Single Cell Transcriptomic Re-analysis of Immune Cells in Bronchoalveolar Lavage Fluids Reveals the Correlation of B Cell Characteristics and Disease Severity of Patients with SARS-CoV-2 Infection.|pdf=|usr=}}
+{{tp|p=33730015|t=2021. Gene variants of coagulation related proteins that interact with SARS-CoV-2.|pdf=|usr=}}
+{{tp|p=33730572|t=2021. Translational adaptation of human viruses to the tissues they infect.|pdf=|usr=}}
+{{tp|p=33732659|t=2021. Exogenous Coronavirus Interacts With Endogenous Retrotransposon in Human Cells.|pdf=|usr=}}
+{{tp|p=33737124|t=2021. Epidemiological transcriptomic data supports BCG protection in viral diseases including COVID-19.|pdf=|usr=}}
+{{tp|p=33737684|t=2021. Proteomic blood profiling in mild, severe and critical COVID-19 patients.|pdf=|usr=}}
+{{tp|p=33737694|t=2021. Metabolomics analysis reveals a modified amino acid metabolism that correlates with altered oxygen homeostasis in COVID-19 patients.|pdf=|usr=}}
+{{tp|p=33740387|t=2021. Lung Epithelial Cell Transcriptional Regulation as a Factor in COVID-19-associated Coagulopathies.|pdf=|usr=}}
+{{tp|p=33743211|t=2021. Discovery and functional interrogation of SARS-CoV-2 RNA-host protein interactions.|pdf=|usr=}}
+{{tp|p=33743212|t=2021. COVID-19 and the human innate immune system.|pdf=|usr=}}
+{{tp|p=33744846|t=2021. TMBIM6, a potential virus target protein identified by integrated multiomics data analysis in SARS-CoV-2-infected host cells.|pdf=|usr=}}
+{{tp|p=33749902|t=2021. Resolvin D1 and D2 reduce SARS-CoV-2-induced inflammatory responses in cystic fibrosis macrophages.|pdf=|usr=}}
+{{tp|p=33749993|t=2021. Integrated intra- and intercellular signaling knowledge for multicellular omics analysis.|pdf=|usr=}}
+{{tp|p=33751111|t=2021. Broad phenotypic alterations and potential dysfunction of lymphocytes in individuals clinically recovered from COVID-19.|pdf=|usr=}}
+{{tp|p=33751722|t=2021. Bioinformatic analyses hinted at augmented T helper 17 cell differentiation and cytokine response as the central mechanism of COVID-19-associated Guillain-Barre syndrome.|pdf=|usr=}}
+{{tp|p=33756482|t=2021. Pathophysiological Implication of Vitamin D in Diabetic Kidney Disease.|pdf=|usr=}}
+{{tp|p=33758849|t=2021. Comparative host interactomes of the SARS-CoV-2 nonstructural protein 3 and human coronavirus homologs.|pdf=|usr=}}
+{{tp|p=33758858|t=2021. Systemic Tissue and Cellular Disruption from SARS-CoV-2 Infection revealed in COVID-19 Autopsies and Spatial Omics Tissue Maps.|pdf=|usr=}}
+{{tp|p=33758859|t=2021. Longitudinal single-cell epitope and RNA-sequencing reveals the immunological impact of type 1 interferon autoantibodies in critical COVID-19.|pdf=|usr=}}
+{{tp|p=33758880|t=2021. High-resolution epigenome analysis in nasal samples derived from children with respiratory viral infections reveals striking changes upon SARS-CoV-2 infection.|pdf=|usr=}}
+{{tp|p=33759345|t=2021. Risk stratification by long non-coding RNAs profiling in COVID-19 patients.|pdf=|usr=}}
+{{tp|p=33762619|t=2021. Mining of high throughput screening database reveals AP-1 and autophagy pathways as potential targets for COVID-19 therapeutics.|pdf=|usr=}}
+{{tp|p=33762960|t=2021. Aripiprazole as a Candidate Treatment of COVID-19 Identified Through Genomic Analysis.|pdf=|usr=}}
+{{tp|p=33765435|t=2021. Multi-cohort analysis of host immune response identifies conserved protective and detrimental modules associated with severity across viruses.|pdf=|usr=}}
+{{tp|p=33765436|t=2021. Longitudinal profiling of respiratory and systemic immune responses reveals myeloid cell-driven lung inflammation in severe COVID-19.|pdf=|usr=}}
+{{tp|p=33767597|t=2021. Evaluation and characterization of HSPA5 (GRP78) expression profiles in normal individuals and cancer patients with COVID-19.|pdf=|usr=}}
+{{tp|p=33767730|t=2021. Structural and Drug Screening Analysis of the Non-structural Proteins of Severe Acute Respiratory Syndrome Coronavirus 2 Virus Extracted From Indian Coronavirus Disease 2019 Patients.|pdf=|usr=}}
+{{tp|p=33769770|t=2021. Potential Endotype Transition for Coronavirus Disease 2019-Related Sepsis With Longitudinal Transcriptome Profiling.|pdf=|usr=}}
+{{tp|p=33769912|t=2021. Analysis of the SARS-CoV-2-host protein interaction network reveals new biology and drug candidates: focus on the spike surface glycoprotein and RNA polymerase.|pdf=|usr=}}
+{{tp|p=33772767|t=2021. Peptide microarray-based analysis of antibody responses to SARS-CoV-2 identifies unique epitopes with potential for diagnostic test development.|pdf=|usr=}}
+{{tp|p=33778090|t=2021. Dysregulated Host Response in Severe Acute Respiratory Syndrome Coronavirus 2-Induced Critical Illness.|pdf=|usr=}}
+{{tp|p=33778306|t=2021. Proteomics Analysis of Serum from COVID-19 Patients.|pdf=|usr=}}
+{{tp|p=33778787|t=2021. Spatial mapping of SARS-CoV-2 and H1N1 lung injury identifies differential transcriptional signatures.|pdf=|usr=}}
+{{tp|p=33780352|t=2021. Differentially expressed immune response genes in COVID-19 patients based on disease severity.|pdf=|usr=}}
+{{tp|p=33780434|t=2021. Disparate temperature-dependent virus-host dynamics for SARS-CoV-2 and SARS-CoV in the human respiratory epithelium.|pdf=|usr=}}
+{{tp|p=33780519|t=2021. Viral genomic, metagenomic and human transcriptomic characterization and prediction of the clinical forms of COVID-19.|pdf=|usr=}}
+{{tp|p=33785765|t=2021. SARS-CoV-2 in severe COVID-19 induces a TGF-beta-dominated chronic immune response that does not target itself.|pdf=|usr=}}
+{{tp|p=33787872|t=2021. Drugmonizome and Drugmonizome-ML: integration and abstraction of small molecule attributes for drug enrichment analysis and machine learning.|pdf=|usr=}}
+{{tp|p=33791231|t=2021. SARS-CoV-2-Indigenous Microbiota Nexus: Does Gut Microbiota Contribute to Inflammation and Disease Severity in COVID-19?|pdf=|usr=}}
+{{tp|p=33791703|t=2021. ACE2 protein expression within isogenic cell lines is heterogeneous and associated with distinct transcriptomes.|pdf=|usr=}}
+{{tp|p=33791717|t=2021. Transcriptome and Functions of Granulocytic Myeloid-Derived Suppressor Cells Determine their Association with Disease Severity of COVID-19.|pdf=|usr=}}
+{{tp|p=33791720|t=2021. A differential regulatory T cell signature distinguishes the immune landscape of COVID-19 hospitalized patients from those hospitalized with other respiratory viral infections.|pdf=|usr=}}
+{{tp|p=33791731|t=2021. Impaired immune signaling and changes in the lung microbiome precede secondary bacterial pneumonia in COVID-19.|pdf=|usr=}}
+{{tp|p=33794925|t=2021. Gene signature and immune cell profiling by high-dimensional, single-cell analysis in COVID-19 patients, presenting Low T3 syndrome and coexistent hematological malignancies.|pdf=|usr=}}
+{{tp|p=33796097|t=2021. Immune Interaction Map of Human SARS-CoV-2 Target Genes: Implications for Therapeutic Avenues.|pdf=|usr=}}
+{{tp|p=33796130|t=2021. Network Analysis and Transcriptome Profiling Identify Autophagic and Mitochondrial Dysfunctions in SARS-CoV-2 Infection.|pdf=|usr=}}
+{{tp|p=33801464|t=2021. SARS-CoV-2 Nucleocapsid Protein Targets RIG-I-Like Receptor Pathways to Inhibit the Induction of Interferon Response.|pdf=|usr=}}
+{{tp|p=33801496|t=2021. miRCOVID-19: Potential Targets of Human miRNAs in SARS-CoV-2 for RNA-Based Drug Discovery.|pdf=|usr=}}
+{{tp|p=33806254|t=2021. Ribosome-Profiling Reveals Restricted Post Transcriptional Expression of Antiviral Cytokines and Transcription Factors during SARS-CoV-2 Infection.|pdf=|usr=}}
+{{tp|p=33807682|t=2021. CNBP Binds and Unfolds In Vitro G-Quadruplexes Formed in the SARS-CoV-2 Positive and Negative Genome Strands.|pdf=|usr=}}
+{{tp|p=33811809|t=2021. BET inhibition blocks inflammation-induced cardiac dysfunction and SARS-CoV-2 infection.|pdf=|usr=}}
+{{tp|p=33812037|t=2021. The role of microRNAs in modulating SARS-CoV-2 infection in human cells: a systematic review.|pdf=|usr=}}
+{{tp|p=33815307|t=2021. Genomic Feature Analysis of Betacoronavirus Provides Insights Into SARS and COVID-19 Pandemics.|pdf=|usr=}}
+{{tp|p=33815688|t=2021. Nanopore sequencing and its application to the study of microbial communities.|pdf=|usr=}}
+{{tp|p=33819681|t=2021. Immunogenicity and antigenicity based T-cell and B-cell epitopes identification from conserved regions of 10664 SARS-CoV-2 genomes.|pdf=|usr=}}
+{{tp|p=33821222|t=2021. An overview of basic molecular biology of SARS-CoV-2 and current COVID-19 prevention strategies.|pdf=|usr=}}
+{{tp|p=33821252|t=2021. Construction of a risk map to understand the vulnerability of various types of cancer patients to COVID-19 infection.|pdf=|usr=}}
+{{tp|p=33821262|t=2021. Transcriptomics-based drug repositioning pipeline identifies therapeutic candidates for COVID-19.|pdf=|usr=}}
+{{tp|p=33823303|t=2021. A single dose of self-transcribing and replicating RNA-based SARS-CoV-2 vaccine produces protective adaptive immunity in mice.|pdf=|usr=}}
+{{tp|p=33823870|t=2021. Adhatoda Vasica attenuates inflammatory and hypoxic responses in preclinical mouse models: potential for repurposing in COVID-19-like conditions.|pdf=|usr=}}
+{{tp|p=33828231|t=2021. From bedside to bench: regulation of host factors in SARS-CoV-2 infection.|pdf=|usr=}}
+{{tp|p=33828579|t=2021. Epigenetic Lens to Visualize the Severe Acute Respiratory Syndrome Coronavirus-2 (SARS-CoV-2) Infection in COVID-19 Pandemic.|pdf=|usr=}}
+{{tp|p=33832440|t=2021. Common low complexity regions for SARS-CoV-2 and human proteomes as potential multidirectional risk factor in vaccine development.|pdf=|usr=}}
+{{tp|p=33833618|t=2021. Whole-Transcriptome RNA Sequencing Reveals Significant Differentially Expressed mRNAs, miRNAs, and lncRNAs and Related Regulating Biological Pathways in the Peripheral Blood of COVID-19 Patients.|pdf=|usr=}}
+{{tp|p=33833618|t=2021. Whole-Transcriptome RNA Sequencing Reveals Significant Differentially Expressed mRNAs, miRNAs, and lncRNAs and Related Regulating Biological Pathways in the Peripheral Blood of COVID-19 Patients.|pdf=|usr=}}
+{{tp|p=33835998|t=2021. Genome Scale-Differential Flux Analysis reveals deregulation of lung cell metabolism on SARS-CoV-2 infection.|pdf=|usr=}}
+{{tp|p=33836156|t=2021. TOP1 inhibition therapy protects against SARS-CoV-2-induced lethal inflammation.|pdf=|usr=}}
+{{tp|p=33836368|t=2021. Identification of COVID-19 subtypes based on immunogenomic profiling.|pdf=|usr=}}
+{{tp|p=33837377|t=2021. Actionable druggable genome-wide Mendelian randomization identifies repurposing opportunities for COVID-19.|pdf=|usr=}}
+{{tp|p=33837972|t=2021. Coronavirus genomic nsp14-ExoN, structure, role, mechanism, and potential application as a drug target.|pdf=|usr=}}
+{{tp|p=33838447|t=2021. Comments on the ambiguity of selected surface markers, signaling pathways and omics profiles hampering the identification of myeloid-derived suppressor cells.|pdf=|usr=}}
+{{tp|p=33839760|t=2021. Bioinformatics and machine learning approach identifies potential drug targets and pathways in COVID-19.|pdf=|usr=}}
+{{tp|p=33841749|t=2021. Metabolomics reveals sex-specific metabolic shifts and predicts the duration from positive to negative in non-severe COVID-19 patients during recovery process.|pdf=|usr=}}
+{{tp|p=33845430|t=2021. The role of human C5a as a non-genomic target in corticosteroid therapy for management of severe COVID19.|pdf=|usr=}}
+{{tp|p=33845483|t=2021. Multilevel proteomics reveals host perturbations by SARS-CoV-2 and SARS-CoV.|pdf=|usr=}}
+{{tp|p=33846375|t=2021. A study of differential circRNA and lncRNA expressions in COVID-19-infected peripheral blood.|pdf=|usr=}}
+{{tp|p=33846694|t=2021. Computational prediction of potential siRNA and human miRNA sequences to silence orf1ab associated genes for future therapeutics against SARS-CoV-2.|pdf=|usr=}}
+{{tp|p=33847185|t=2021. Therapeutic Nuclear Magnetic Resonance affects the core clock mechanism and associated Hypoxia-inducible factor-1.|pdf=|usr=}}
+{{tp|p=33847347|t=2021. Bioinformatics and system biology approach to identify the influences of SARS-CoV-2 infections to idiopathic pulmonary fibrosis and chronic obstructive pulmonary disease patients.|pdf=|usr=}}
+{{tp|p=33848447|t=2021. Secreted Extracellular Cyclophilin A Is a Novel Mediator of Ventilator-induced Lung Injury.|pdf=|usr=}}
+{{tp|p=33848683|t=2021. Systematizing the genomic order and relatedness in the open reading frames (ORFs) of the coronaviruses.|pdf=|usr=}}
+{{tp|p=33849358|t=2021. An overview of proteomic methods for the study of 'cytokine storms'.|pdf=|usr=}}
+{{tp|p=33851168|t=2021. An Autoantigen-ome from HS-Sultan B-Lymphoblasts Offers a Molecular Map for Investigating Autoimmune Sequelae of COVID-19.|pdf=|usr=}}
+{{tp|p=33852178|t=2021. Efficient Human Cell Coexpression System and Its Application to the Production of Multiple Coronavirus Antigens.|pdf=|usr=}}
+{{tp|p=33852884|t=2021. Human Pluripotent Stem Cell-Derived Intestinal Organoids Model SARS-CoV-2 Infection Revealing a Common Epithelial Inflammatory Response.|pdf=|usr=}}
+{{tp|p=33852916|t=2021. Hypoxic and pharmacological activation of HIF inhibits SARS-CoV-2 infection of lung epithelial cells.|pdf=|usr=}}
+{{tp|p=33855276|t=2021. Tissue-Specific Proteomics Analysis of Anti-COVID-19 Nucleoside and Nucleotide Prodrug-Activating Enzymes Provides Insights into the Optimization of Prodrug Design and Pharmacotherapy Strategy.|pdf=|usr=}}
+{{tp|p=33855294|t=2021. Possible Involvement of Central Nervous System in COVID-19 and Sequence Variability of SARS-CoV-2 Revealed in Autopsy Tissue Samples: A Case Report.|pdf=|usr=}}
+{{tp|p=33860983|t=2021. Mass spectrometry-based proteomic platforms for better understanding of SARS-CoV-2 induced pathogenesis and potential diagnostic approaches.|pdf=|usr=}}
+{{tp|p=33862077|t=2021. Notable sequence homology of the ORF10 protein introspects the architecture of SARS-CoV-2.|pdf=|usr=}}
+{{tp|p=33864728|t=2021. Host PDZ-containing proteins targeted by SARS-CoV-2.|pdf=|usr=}}
+{{tp|p=33867312|t=2021. Evidence of the pathogenic HERV-W envelope expression in T lymphocytes in association with the respiratory outcome of COVID-19 patients.|pdf=|usr=}}
+{{tp|p=33867313|t=2021. Epigenome-wide association study of COVID-19 severity with respiratory failure.|pdf=|usr=}}
+{{tp|p=33868239|t=2021. Genetics Insight for COVID-19 Susceptibility and Severity: A Review.|pdf=|usr=}}
+{{tp|p=33868293|t=2021. MicroLet-7b Regulates Neutrophil Function and Dampens Neutrophilic Inflammation by Suppressing the Canonical TLR4/NF-kappaB Pathway.|pdf=|usr=}}
+{{tp|p=33868814|t=2021. Multi-schema computational prediction of the comprehensive SARS-CoV-2 vs. human interactome.|pdf=|usr=}}
+{{tp|p=33868814|t=2021. Multi-schema computational prediction of the comprehensive SARS-CoV-2 vs. human interactome.|pdf=|usr=}}
+{{tp|p=33872375|t=2021. A model of active transcription hubs that unifies the roles of active promoters and enhancers.|pdf=|usr=}}
+{{tp|p=33876664|t=2021. Epigenomics in COVID-19; the link between DNA methylation, histone modifications and SARS-CoV-2 infection.|pdf=|usr=}}
+{{tp|p=33877681|t=2021. Prediction of potential therapeutic drugs against SARS-CoV-2 by using Connectivity Map based on transcriptome data.|pdf=|usr=}}
+{{tp|p=33879239|t=2021. IFN-gamma and TNF-alpha drive a CXCL10+ CCL2+ macrophage phenotype expanded in severe COVID-19 lungs and inflammatory diseases with tissue inflammation.|pdf=|usr=}}
+{{tp|p=33879756|t=2021. Single-cell analysis of angiotensin-converting enzyme II expression in human kidneys and bladders reveals a potential route of 2019 novel coronavirus infection.|pdf=|usr=}}
+{{tp|p=33882487|t=2021. Antibody-Dependent Enhancement and the Critical Pattern of COVID-19: Possibilities and Considerations.|pdf=|usr=}}
+{{tp|p=33883027|t=2021. Genetic and non-genetic factors affecting the expression of COVID-19-relevant genes in the large airway epithelium.|pdf=|usr=}}
+{{tp|p=33883570|t=2021. Evidence of a dysregulated vitamin D endocrine system in SARS-CoV-2 infected patient's lung cells.|pdf=|usr=}}
+{{tp|p=33883694|t=2021. The pathogenic role of epithelial and endothelial cells in early-phase COVID-19 pneumonia: victims and partners in crime.|pdf=|usr=}}
+{{tp|p=33883951|t=2021. Binding of the SARS-CoV-2 Spike Protein to the Asialoglycoprotein Receptor on Human Primary Hepatocytes and Immortalized Hepatocyte-Like Cells by Confocal Analysis.|pdf=|usr=}}
+{{tp|p=33884369|t=2021. Platypus: an open-access software for integrating lymphocyte single-cell immune repertoires with transcriptomes.|pdf=|usr=}}
+{{tp|p=33884644|t=2021. Profound dysregulation of T cell homeostasis and function in patients with severe COVID-19.|pdf=|usr=}}
+{{tp|p=33887367|t=2021. Inferring molecular mechanisms of dexamethasone therapy in severe COVID-19 from existing transcriptomic data.|pdf=|usr=}}
+{{tp|p=33888467|t=2021. SARS-CoV-2 can recruit a heme metabolite to evade antibody immunity.|pdf=|usr=}}
+{{tp|p=33888907|t=2021. Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.|pdf=|usr=}}
+{{tp|p=33891889|t=2021. Immune dysregulation and autoreactivity correlate with disease severity in SARS-CoV-2-associated multisystem inflammatory syndrome in children.|pdf=|usr=}}
+{{tp|p=33891947|t=2021. Repression of transcription by the glucocorticoid receptor: A parsimonious model for the genomics era.|pdf=|usr=}}
+{{tp|p=33892139|t=2021. Double stranded RNA drives anti-viral innate immune responses, sickness behavior and cognitive dysfunction dependent on dsRNA length, IFNAR1 expression and age.|pdf=|usr=}}
+{{tp|p=33892145|t=2021. Web resources facilitate drug discovery in treatment of COVID-19.|pdf=|usr=}}
+{{tp|p=33893170|t=2021. Human Nasal and Lung Tissues Infected Ex Vivo with SARS-CoV-2 Provide Insights into Differential Tissue-Specific and Virus-Specific Innate Immune Responses in the Upper and Lower Respiratory Tract.|pdf=|usr=}}
+{{tp|p=33894177|t=2021. Targeting Runt-Related Transcription Factor 1 Prevents Pulmonary Fibrosis and Reduces Expression of Severe Acute Respiratory Syndrome Coronavirus 2 Host Mediators.|pdf=|usr=}}
+{{tp|p=33895135|t=2021. Inhibition of acid sphingomyelinase by ambroxol prevents SARS-CoV-2 entry into epithelial cells.|pdf=|usr=}}
+{{tp|p=33895478|t=2021. Acute and post-acute phase of COVID-19: Analyzing expression patterns of miRNA-29a-3p, 146a-3p, 155-5p, and let-7b-3p in PBMC.|pdf=|usr=}}
+{{tp|p=33898797|t=2021. Identification of PBMC-based molecular signature associational with COVID-19 disease severity.|pdf=|usr=}}
+{{tp|p=33898942|t=2021. Cell-type-resolved quantitative proteomics map of interferon response against SARS-CoV-2.|pdf=|usr=}}
+{{tp|p=33906069|t=2021. VB10, a new blood biomarker for differential diagnosis and recovery monitoring of acute viral and bacterial infections.|pdf=|usr=}}
+{{tp|p=33906662|t=2021. Expression of the SARS-CoV-2 receptorACE2 in human heart is associated with uncontrolled diabetes, obesity, and activation of the renin angiotensin system.|pdf=|usr=}}
+{{tp|p=33907373|t=2021. Identification of selected genes associated with the SARS-CoV-2: a therapeutic approach and disease severity.|pdf=|usr=}}
+{{tp|p=33907514|t=2021. The role of CD4(+)FoxP3(+) regulatory T cells in the immunopathogenesis of COVID-19: implications for treatment.|pdf=|usr=}}
+{{tp|p=33907515|t=2021. Developing effective siRNAs to reduce the expression of key viral genes of COVID-19.|pdf=|usr=}}
+{{tp|p=33907518|t=2021. SARS-CoV-2 main protease suppresses type I interferon production by preventing nuclear translocation of phosphorylated IRF3.|pdf=|usr=}}
+{{tp|p=33907612|t=2021. Comparisons of the immunological landscape between COVID-19, influenza, and respiratory syncytial virus patients by clustering analysis.|pdf=|usr=}}
+{{tp|p=33907739|t=2021. Analysis workflow of publicly available RNA-sequencing datasets.|pdf=|usr=}}
+{{tp|p=33907748|t=2021. Rapid decay of host basal mRNAs during SARS-CoV-2 infection perturbs host antiviral mRNA biogenesis and export.|pdf=|usr=}}
+{{tp|p=33907750|t=2022. Identification of druggable host targets needed for SARS-CoV-2 infection by combined pharmacological evaluation and cellular network directed prioritization both in vitro and in vivo.|pdf=|usr=}}
+{{tp|p=33907759|t=2021. Proteomic Profiling of MIS-C Patients Reveals Heterogeneity Relating to Interferon Gamma Dysregulation and Vascular Endothelial Dysfunction.|pdf=|usr=}}
+{{tp|p=33907801|t=2021. Analyzing master regulators and scRNA-seq of COVID-19 patients reveals an underlying anti-SARS-CoV-2 mechanism of ZNF proteins.|pdf=|usr=}}
+{{tp|p=33913542|t=2021. Can molecular mimicry explain the cytokine storm of SARS-CoV-2?: An in silico approach.|pdf=|usr=}}
+{{tp|p=33916492|t=2021. Genotyping of the Major SARS-CoV-2 Clade by Short-Amplicon High-Resolution Melting (SA-HRM) Analysis.|pdf=|usr=}}
+{{tp|p=33917481|t=2021. Role of Structural and Non-Structural Proteins and Therapeutic Targets of SARS-CoV-2 for COVID-19.|pdf=|usr=}}
+{{tp|p=33918313|t=2021. A COVID-19 Drug Repurposing Strategy through Quantitative Homological Similarities Using a Topological Data Analysis-Based Framework.|pdf=|usr=}}
+{{tp|p=33919660|t=2021. Drug Repurposing for COVID-19 Treatment by Integrating Network Pharmacology and Transcriptomics.|pdf=|usr=}}
+{{tp|p=33919784|t=2021. The Role of Macrophages in the Development of Acute and Chronic Inflammatory Lung Diseases.|pdf=|usr=}}
+{{tp|p=33923155|t=2021. Investigating Cellular Trajectories in the Severity of COVID-19 and Their Transcriptional Programs Using Machine Learning Approaches.|pdf=|usr=}}
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+{{tp|p=33926500|t=2021. SARS-CoV-2 interacts with platelets and megakaryocytes via ACE2-independent mechanism.|pdf=|usr=}}
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+{{tp|p=33932453|t=2021. Nrf2 activation putatively mediates clinical benefits of low-dose radiotherapy in COVID-19 pneumonia and acute respiratory distress syndrome (ARDS): Novel mechanistic considerations.|pdf=|usr=}}
+{{tp|p=33935717|t=2021. Na(+)/K(+)-ATPase as a Target of Cardiac Glycosides for the Treatment of SARS-CoV-2 Infection.|pdf=|usr=}}
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+{{tp|p=33941085|t=2021. The Coronavirus Network Explorer: mining a large-scale knowledge graph for effects of SARS-CoV-2 on host cell function.|pdf=|usr=}}
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+{{tp|p=33941660|t=2021. Transglutaminase 2 Regulates Innate Immunity by Modulating the STING/TBK1/IRF3 Axis.|pdf=|usr=}}
+{{tp|p=33942030|t=2021. Molecular Analysis of the Kidney From a Patient With COVID-19-Associated Collapsing Glomerulopathy.|pdf=|usr=}}
+{{tp|p=33945677|t=2021. Longitudinal proteomic profiling provides insights into host response and proteome dynamics in COVID-19 progression.|pdf=|usr=}}
+{{tp|p=33946341|t=2021. Proteomics: A Tool to Study Platelet Function.|pdf=|usr=}}
+{{tp|p=33946479|t=2021. Metabolic Signatures Associated with Severity in Hospitalized COVID-19 Patients.|pdf=|usr=}}
+{{tp|p=33949668|t=2021. Integrative genomics analysis reveals a 21q22.11 locus contributing risk to COVID-19.|pdf=|usr=}}
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+{{tp|p=33963053|t=2021. Targeting the Conserved Stem Loop 2 Motif in the SARS-CoV-2 Genome.|pdf=|usr=}}
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+{{tp|p=33975939|t=2021. The SARS-CoV-2 Transcriptome and the Dynamics of the S Gene Furin Cleavage Site in Primary Human Airway Epithelia.|pdf=|usr=}}
+{{tp|p=33976430|t=2021. RIG-I triggers a signaling-abortive anti-SARS-CoV-2 defense in human lung cells.|pdf=|usr=}}
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+{{tp|p=33980279|t=2021. COVID19-CT-dataset: an open-access chest CT image repository of 1000+ patients with confirmed COVID-19 diagnosis.|pdf=|usr=}}
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+{{tp|p=33981492|t=2021. Re-positive of SARS-CoV-2 test is common in COVID-19 patients after hospital discharge. Data from high standard post-discharge quarantined patients in Macao SAR, China.|pdf=|usr=}}
+{{tp|p=33986193|t=2021. A specific low-density neutrophil population correlates with hypercoagulation and disease severity in hospitalized COVID-19 patients.|pdf=|usr=}}
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+{{tp|p=33992143|t=2021. Long-term effects of COVID-19 on kidney function.|pdf=|usr=}}
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+{{tp|p=33995033|t=2021. SARS-CoV-2 Switches 'on' MAPK and NFkappaB Signaling via the Reduction of Nuclear DUSP1 and DUSP5 Expression.|pdf=|usr=}}
+{{tp|p=33995382|t=2021. SARS-CoV-2 Induces Lymphocytopenia by Promoting Inflammation and Decimates Secondary Lymphoid Organs.|pdf=|usr=}}
+{{tp|p=33996501|t=2021. Design of advanced siRNA therapeutics for the treatment of COVID-19.|pdf=|usr=}}
+{{tp|p=33996638|t=2021. The Unfolded Protein Response and Autophagy on the Crossroads of Coronaviruses Infections.|pdf=|usr=}}
+{{tp|p=33997298|t=2021. -------A type I IFN, prothrombotic hyperinflammatory neutrophil signature is distinct for COVID-19 ARDS--.|pdf=|usr=}}
+{{tp|p=34000623|t=2021. Defective NET clearance contributes to sustained FXII activation in COVID-19-associated pulmonary thrombo-inflammation.|pdf=|usr=}}
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+{{tp|p=34003736|t=2021. ZMPSTE24 Regulates SARS-CoV-2 Spike Protein-enhanced Expression of Endothelial PAI-1.|pdf=|usr=}}
+{{tp|p=34004360|t=2021. Differential host circRNA expression profiles in human lung epithelial cells infected with SARS-CoV-2.|pdf=|usr=}}
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+{{tp|p=34011150|t=2021. Development and Application of Human Coronavirus Protein Microarray for Specificity Analysis.|pdf=|usr=}}
+{{tp|p=34013266|t=2020. Serial co-expression analysis of host factors from SARS-CoV viruses highly converges with former high-throughput screenings and proposes key regulators and co-option of cellular pathways.|pdf=|usr=}}
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+{{tp|p=34014278|t=2021. 3DBionotes COVID-19 Edition.|pdf=|usr=}}
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+{{tp|p=34019265|t=2021. Molecular Mechanisms of Vascular Damage During Lung Injury.|pdf=|usr=}}
+{{tp|p=34019643|t=2021. eVITTA: a web-based visualization and inference toolbox for transcriptome analysis.|pdf=|usr=}}
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+{{tp|p=34022127|t=2021. Profiling B cell immunodominance after SARS-CoV-2 infection reveals antibody evolution to non-neutralizing viral targets.|pdf=|usr=}}
+{{tp|p=34022369|t=2021. Detection of SARS-CoV-2 genome and whole transcriptome sequencing in frontal cortex of COVID-19 patients.|pdf=|usr=}}
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+{{tp|p=34027422|t=2021. Platelet and Haemostasis are the Main Targets in Severe Cases of COVID-19 Infection; a System Biology Study.|pdf=|usr=}}
+{{tp|p=34027897|t=2021. The relationship between cytokine and neutrophil gene network distinguishes SARS-CoV-2-infected patients by sex and age.|pdf=|usr=}}
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+{{tp|p=34031419|t=2021. Comparative transcriptome analysis reveals key epigenetic targets in SARS-CoV-2 infection.|pdf=|usr=}}
+{{tp|p=34031419|t=2021. Comparative transcriptome analysis reveals key epigenetic targets in SARS-CoV-2 infection.|pdf=|usr=}}
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+{{tp|p=34031668|t=2021. Distinct Mucoinflammatory Phenotype and the Immunomodulatory Long Noncoding Transcripts Associated with SARS-CoV-2 Airway Infection.|pdf=|usr=}}
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+{{tp|p=34035220|t=2021. Proteomics of extracellular vesicles in plasma reveals the characteristics and residual traces of COVID-19 patients without underlying diseases after 3 months of recovery.|pdf=|usr=}}
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+{{tp|p=34047474|t=2021. Preliminary analyses of scRNA sequencing and immunohistochemistry of children's lung tissues indicate the expression of SARS-CoV-2 entry-related genes may not be the key reason for the milder syndromes of COVID-19 in children.|pdf=|usr=}}
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+{{tp|p=34048985|t=2021. Circulating microRNA profiles predict the severity of COVID-19 in hospitalized patients.|pdf=|usr=}}
+{{tp|p=34051148|t=2021. Longitudinal analysis reveals that delayed bystander CD8+ T cell activation and early immune pathology distinguish severe COVID-19 from mild disease.|pdf=|usr=}}
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+{{tp|p=34058321|t=2021. Nrf2 activator PB125(R) as a carnosic acid-based therapeutic agent against respiratory viral diseases, including COVID-19.|pdf=|usr=}}
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+{{tp|p=34062119|t=2021. Integrated analysis of multimodal single-cell data.|pdf=|usr=}}
+{{tp|p=34066850|t=2021. Human Gut Microbiome and Liver Diseases: From Correlation to Causation.|pdf=|usr=}}
+{{tp|p=34068142|t=2021. Human Milk from Previously COVID-19-Infected Mothers: The Effect of Pasteurization on Specific Antibodies and Neutralization Capacity.|pdf=|usr=}}
+{{tp|p=34069591|t=2021. Metabolic Profiling from an Asymptomatic Ferret Model of SARS-CoV-2 Infection.|pdf=|usr=}}
+{{tp|p=34070662|t=2021. Breast Milk and COVID-19: From Conventional Data to "Omics" Technologies to Investigate Changes Occurring in SARS-CoV-2 Positive Mothers.|pdf=|usr=}}
+{{tp|p=34073047|t=2021. Comparative Transcriptomic and Molecular Pathway Analyses of HL-CZ Human Pro-Monocytic Cells Expressing SARS-CoV-2 Spike S1, S2, NP, NSP15 and NSP16 Genes.|pdf=|usr=}}
+{{tp|p=34073578|t=2021. Ceramide and Related Molecules in Viral Infections.|pdf=|usr=}}
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+{{tp|p=34075354|t=2021. A matter of perspective-Cutting-edge technology-driven urine proteome in COVID-19.|pdf=|usr=}}
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+{{tp|p=34090218|t=2021. COVID-19 patients' sera induce epithelial mesenchymal transition in cancer cells.|pdf=|usr=}}
+{{tp|p=34092811|t=2021. mRNA Targeting, Transport and Local Translation in Eukaryotic Cells: From the Classical View to a Diversity of New Concepts.|pdf=|usr=}}
+{{tp|p=34093642|t=2021. Machine Learning Assisted Prediction of Prognostic Biomarkers Associated With COVID-19, Using Clinical and Proteomics Data.|pdf=|usr=}}
+{{tp|p=34094635|t=2021. Construction of a Human Cell Landscape of COVID-19 Infection at Single-cell Level.|pdf=|usr=}}
+{{tp|p=34094684|t=2021. Epithelial-mesenchymal transition induced by SARS-CoV-2 required transcriptional upregulation of Snail.|pdf=|usr=}}
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+{{tp|p=34104087|t=2021. SARS-CoV-2 infection activates a subset of intrinsic pathways to inhibit type I interferons in vitro and in vivo.|pdf=|usr=}}
+{{tp|p=34105201|t=2021. Quantitative proteomics of hamster lung tissues infected with SARS-CoV-2 reveal host factors having implication in the disease pathogenesis and severity.|pdf=|usr=}}
+{{tp|p=34106748|t=2021. N-(4-Hydroxyphenyl) Retinamide Suppresses SARS-CoV-2 Spike Protein-Mediated Cell-Cell Fusion by a Dihydroceramide Delta4-Desaturase 1-Independent Mechanism.|pdf=|usr=}}
+{{tp|p=34107055|t=2021. Tofacitinib therapy intercepts macrophage metabolic reprogramming instigated by SARS-CoV-2 Spike protein.|pdf=|usr=}}
+{{tp|p=34108016|t=2021. Network medicine links SARS-CoV-2/COVID-19 infection to brain microvascular injury and neuroinflammation in dementia-like cognitive impairment.|pdf=|usr=}}
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+{{tp|p=34108966|t=2021. Transcriptional Changes in CD16+ Monocytes May Contribute to the Pathogenesis of COVID-19.|pdf=|usr=}}
+{{tp|p=34109017|t=2021. The evolving proteome of SARS-CoV-2 predominantly uses mutation combination strategy for survival.|pdf=|usr=}}
+{{tp|p=34110264|t=2021. SARS-CoV-2 Nonstructural Protein 1 Inhibits the Interferon Response by Causing Depletion of Key Host Signaling Factors.|pdf=|usr=}}
+{{tp|p=34112226|t=2021. Comparison of renal histopathology and gene expression profiles between severe COVID-19 and bacterial sepsis in critically ill patients.|pdf=|usr=}}
+{{tp|p=34112877|t=2021. Transcriptomics-based drug repositioning pipeline identifies therapeutic candidates for COVID-19.|pdf=|usr=}}
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+{{tp|p=34117968|t=2022. Mitochondrial DNA Heteroplasmy as an Informational Reservoir Dynamically Linked to Metabolic and Immunological Processes Associated with COVID-19 Neurological Disorders.|pdf=|usr=}}
+{{tp|p=34118117|t=2021. The lethal internal face of the coronaviruses: Kidney tropism of the SARS, MERS, and COVID19 viruses.|pdf=|usr=}}
+{{tp|p=34121407|t=2021. Revealing the Structural Plasticity of SARS-CoV-2 nsp7 and nsp8 Using Structural Proteomics.|pdf=|usr=}}
+{{tp|p=34122515|t=2021. Transcriptional Start Site Coverage Analysis in Plasma Cell-Free DNA Reveals Disease Severity and Tissue Specificity of COVID-19 Patients.|pdf=|usr=}}
+{{tp|p=34127431|t=2021. AI-guided discovery of the invariant host response to viral pandemics.|pdf=|usr=}}
+{{tp|p=34127534|t=2021. Genes with 5' terminal oligopyrimidine tracts preferentially escape global suppression of translation by the SARS-CoV-2 Nsp1 protein.|pdf=|usr=}}
+{{tp|p=34127837|t=2021. How COVID-19 disrupts glycometabolic control.|pdf=|usr=}}
+{{tp|p=34127963|t=2021. Plasma Proteomics of COVID-19 Associated Cardiovascular Complications: Implications for Pathophysiology and Therapeutics.|pdf=|usr=}}
+{{tp|p=34127967|t=2021. Type I Interferon Transcriptional Network Regulates Expression of Coinhibitory Receptors in Human T cells.|pdf=|usr=}}
+{{tp|p=34127970|t=2021. Identification of ACE2 modifiers by CRISPR screening.|pdf=|usr=}}
+{{tp|p=34128959|t=2021. Multi-omic profiling reveals widespread dysregulation of innate immunity and hematopoiesis in COVID-19.|pdf=|usr=}}
+{{tp|p=34128960|t=2021. Dynamic innate immune response determines susceptibility to SARS-CoV-2 infection and early replication kinetics.|pdf=|usr=}}
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+{{tp|p=34133077|t=2021. Long-lived macrophage reprogramming drives spike protein-mediated inflammasome activation in COVID-19.|pdf=|usr=}}
+{{tp|p=34135895|t=2021. Transcriptomic Signature Differences Between SARS-CoV-2 and Influenza Virus Infected Patients.|pdf=|usr=}}
+{{tp|p=34137202|t=2021. Optimization of a modeling platform to predict oncogenes from genome-scale metabolic networks of non-small-cell lung cancers.|pdf=|usr=}}
+{{tp|p=34139154|t=2021. A time-resolved proteomic and prognostic map of COVID-19.|pdf=|usr=}}
+{{tp|p=34139362|t=2021. Proteome Profiling of Recombinant DNase Therapy in Reducing NETs and Aiding Recovery in COVID-19 Patients.|pdf=|usr=}}
+{{tp|p=34140500|t=2021. Combining machine learning and nanopore construction creates an artificial intelligence nanopore for coronavirus detection.|pdf=|usr=}}
+{{tp|p=34143756|t=2021. COVID-19 and RA share an SPP1 myeloid pathway that drives PD-L1+ neutrophils and CD14+ monocytes.|pdf=|usr=}}
+{{tp|p=34146538|t=2021. Peptides of H. sapiens and P. falciparum that are predicted to bind strongly to HLA-A24:02 and homologous to a SARS-CoV-2 peptide.|pdf=|usr=}}
+{{tp|p=34146958|t=2021. SARS-CoV2 infection impairs the metabolism and redox function of cellular glutathione.|pdf=|usr=}}
+{{tp|p=34147651|t=2021. Global variation in SARS-CoV-2 proteome and its implication in pre-lockdown emergence and dissemination of 5 dominant SARS-CoV-2 clades.|pdf=|usr=}}
+{{tp|p=34150352|t=2021. Identification of Monocytes Associated with Severe COVID-19 in the PBMCs of Severely Infected patients Through Single-Cell Transcriptome Sequencing.|pdf=|usr=}}
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+{{tp|p=34205098|t=2021. The Pro-Inflammatory Chemokines CXCL9, CXCL10 and CXCL11 Are Upregulated Following SARS-CoV-2 Infection in an AKT-Dependent Manner.|pdf=|usr=}}
+{{tp|p=34205975|t=2021. Multifaced Roles of HDL in Sepsis and SARS-CoV-2 Infection: Renal Implications.|pdf=|usr=}}
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+{{tp|p=34228987|t=2021. SARS-CoV-2 Spike protein enhances ACE2 expression via facilitating Interferon effects in bronchial epithelium.|pdf=|usr=}}
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+{{tp|p=34335605|t=2021. High-Density Blood Transcriptomics Reveals Precision Immune Signatures of SARS-CoV-2 Infection in Hospitalized Individuals.|pdf=|usr=}}
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+{{tp|p=34361874|t=2021. SARS-CoV-2 Infection Remodels the Phenotype and Promotes Angiogenesis of Primary Human Lung Endothelial Cells.|pdf=|usr=}}
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+{{tp|p=34394094|t=2021. Single-Cell Transcriptomic Profiling of MAIT Cells in Patients With COVID-19.|pdf=|usr=}}
+{{tp|p=34394108|t=2021. Identification of COVID-19 and Dengue Host Factor Interaction Networks Based on Integrative Bioinformatics Analyses.|pdf=|usr=}}
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+{{tp|p=34402498|t=2022. Infection outcome needs two to tango: human host and the pathogen.|pdf=|usr=}}
+{{tp|p=34404832|t=2021. Inhibiting SARS-CoV-2 infection in vitro by suppressing its receptor, angiotensin-converting enzyme 2, via aryl-hydrocarbon receptor signal.|pdf=|usr=}}
+{{tp|p=34405154|t=2021. Luciferase reporter assays to monitor interferon signaling modulation by SARS-CoV-2 proteins.|pdf=|usr=}}
+{{tp|p=34406356|t=2021. coronaSPAdes: from biosynthetic gene clusters to RNA viral assemblies.|pdf=|usr=}}
+{{tp|p=34407143|t=2021. Genomics-guided identification of potential modulators of SARS-CoV-2 entry proteases, TMPRSS2 and Cathepsins B/L.|pdf=|usr=}}
+{{tp|p=34407940|t=2021. Age-dependent regulation of SARS-CoV-2 cell entry genes and cell death programs correlates with COVID-19 severity.|pdf=|usr=}}
+{{tp|p=34408743|t=2021. Fast and Efficient Genome Editing of Human FOXP3(+) Regulatory T Cells.|pdf=|usr=}}
+{{tp|p=34408749|t=2021. Long Noncoding RNAs as Emerging Regulators of COVID-19.|pdf=|usr=}}
+{{tp|p=34409594|t=2021. Genome-scale metabolic modelling of SARS-CoV-2 in cancer cells reveals an increased shift to glycolytic energy production.|pdf=|usr=}}
+{{tp|p=34413339|t=2021. SARS-CoV-2 infection initiates interleukin-17-enriched transcriptional response in different cells from multiple organs.|pdf=|usr=}}
+{{tp|p=34414385|t=2021. A monocyte/dendritic cell molecular signature of SARS-CoV-2-related multisystem inflammatory syndrome in children with severe myocarditis.|pdf=|usr=}}
+{{tp|p=34416267|t=2021. Hypoxia alters the expression of ACE2 and TMPRSS2 SARS-CoV-2 cell entry mediators in hCMEC/D3 brain endothelial cells.|pdf=|usr=}}
+{{tp|p=34419773|t=2021. Which ones, when and why should renin-angiotensin system inhibitors work against COVID-19?|pdf=|usr=}}
+{{tp|p=34423353|t=2021. Recent omics-based computational methods for COVID-19 drug discovery and repurposing.|pdf=|usr=}}
+{{tp|p=34424199|t=2021. Integrated single-cell analysis unveils diverging immune features of COVID-19, influenza, and other community-acquired pneumonia.|pdf=|usr=}}
+{{tp|p=34425843|t=2021. Persistent clotting protein pathology in Long COVID/Post-Acute Sequelae of COVID-19 (PASC) is accompanied by increased levels of antiplasmin.|pdf=|usr=}}
+{{tp|p=34430958|t=2021. Concise Update on Genomics of COVID-19: Approach to Its latest Mutations, Escalated Contagiousness, and Vaccine Resistance.|pdf=|usr=}}
+{{tp|p=34432798|t=2021. Oligonucleotide capture sequencing of the SARS-CoV-2 genome and subgenomic fragments from COVID-19 individuals.|pdf=|usr=}}
+{{tp|p=34433692|t=2021. Profound Treg perturbations correlate with COVID-19 severity.|pdf=|usr=}}
+{{tp|p=34433821|t=2021. Comprehensive mapping of SARS-CoV-2 interactions in vivo reveals functional virus-host interactions.|pdf=|usr=}}
+{{tp|p=34433827|t=2021. A high-resolution temporal atlas of the SARS-CoV-2 translatome and transcriptome.|pdf=|usr=}}
+{{tp|p=34433832|t=2021. Homology between SARS CoV-2 and human proteins.|pdf=|usr=}}
+{{tp|p=34436507|t=2021. Human-SARS-CoV-2 interactome and human genetic diversity: TMPRSS2-rs2070788, associated with severe influenza, and its population genetics caveats in Native Americans.|pdf=|usr=}}
+{{tp|p=34437303|t=2021. The autoimmune signature of hyperinflammatory multisystem inflammatory syndrome in children.|pdf=|usr=}}
+{{tp|p=34437657|t=2021. SARS-CoV-2 suppresses IFNbeta production mediated by NSP1, 5, 6, 15, ORF6 and ORF7b but does not suppress the effects of added interferon.|pdf=|usr=}}
+{{tp|p=34440372|t=2021. Methylation of Host Genes Associated with Coronavirus Infection from Birth to 26 Years.|pdf=|usr=}}
+{{tp|p=34440669|t=2021. Multisystemic Cellular Tropism of SARS-CoV-2 in Autopsies of COVID-19 Patients.|pdf=|usr=}}
+{{tp|p=34440765|t=2021. Autophagy and Mitophagy-Related Pathways at the Crossroads of Genetic Pathways Involved in Familial Sarcoidosis and Host-Pathogen Interactions Induced by Coronaviruses.|pdf=|usr=}}
+{{tp|p=34441862|t=2021. Weighted Gene Co-Expression Network Analysis Combined with Machine Learning Validation to Identify Key Modules and Hub Genes Associated with SARS-CoV-2 Infection.|pdf=|usr=}}
+{{tp|p=34445741|t=2021. SARS-CoV-2 Proteins Bind to Hemoglobin and Its Metabolites.|pdf=|usr=}}
+{{tp|p=34446707|t=2021. Tracheal aspirate RNA sequencing identifies distinct immunological features of COVID-19 ARDS.|pdf=|usr=}}
+{{tp|p=34447375|t=2021. SARS-CoV-2 Proteome Harbors Peptides Which Are Able to Trigger Autoimmunity Responses: Implications for Infection, Vaccination, and Population Coverage.|pdf=|usr=}}
+{{tp|p=34448730|t=2021. A dynamic mucin mRNA signature associates with COVID-19 disease presentation and severity.|pdf=|usr=}}
+{{tp|p=34451848|t=2021. Coronavirus Disease (COVID)-19 and Diabetic Kidney Disease.|pdf=|usr=}}
+{{tp|p=34452305|t=2021. SARS-CoV-2 N Protein Targets TRIM25-Mediated RIG-I Activation to Suppress Innate Immunity.|pdf=|usr=}}
+{{tp|p=34452405|t=2021. Multi-Tissue Transcriptomic-Informed In Silico Investigation of Drugs for the Treatment of Dengue Fever Disease.|pdf=|usr=}}
+{{tp|p=34452458|t=2021. Detection of SARS-CoV-2 Derived Small RNAs and Changes in Circulating Small RNAs Associated with COVID-19.|pdf=|usr=}}
+{{tp|p=34452933|t=2021. Suppressive Monocytes Impair MAIT Cells Response via IL-10 in Patients with Severe COVID-19.|pdf=|usr=}}
+{{tp|p=34452991|t=2021. Protease cleavage of RNF20 facilitates coronavirus replication via stabilization of SREBP1.|pdf=|usr=}}
+{{tp|p=34458641|t=2021. Host gene variability and SARS-CoV-2 infection: A review article.|pdf=|usr=}}
+{{tp|p=34458692|t=2021. Single-cell transcriptome identifies FCGR3B upregulated subtype of alveolar macrophages in patients with critical COVID-19.|pdf=|usr=}}
+{{tp|p=34460840|t=2021. Immunometabolic signatures predict risk of progression to sepsis in COVID-19.|pdf=|usr=}}
+{{tp|p=34462737|t=2021. An antigen microarray protocol for COVID-19 serological analysis.|pdf=|usr=}}
+{{tp|p=34462739|t=2021. Upper airway gene expression reveals a more robust innate and adaptive immune response to SARS-CoV-2 in children compared with older adults.|pdf=|usr=}}
+{{tp|p=34462747|t=2021. Woodsmoke particulates alter expression of antiviral host response genes in human nasal epithelial cells infected with SARS-CoV-2 in a sex-dependent manner.|pdf=|usr=}}
+{{tp|p=34465742|t=2021. Genome-wide association study of COVID-19 severity among the Chinese population.|pdf=|usr=}}
+{{tp|p=34465887|t=2021. Trans-ethnic genome-wide association study of severe COVID-19.|pdf=|usr=}}
+{{tp|p=34468193|t=2021. Targeted Hybridization Capture of SARS-CoV-2 and Metagenomics Enables Genetic Variant Discovery and Nasal Microbiome Insights.|pdf=|usr=}}
+{{tp|p=34471255|t=2021. Cellular host factors for SARS-CoV-2 infection.|pdf=|usr=}}
+{{tp|p=34473805|t=2021. Differential plasmacytoid dendritic cell phenotype and type I Interferon response in asymptomatic and severe COVID-19 infection.|pdf=|usr=}}
+{{tp|p=34476621|t=2021. Progranulin signaling in sepsis, community-acquired bacterial pneumonia and COVID-19: a comparative, observational study.|pdf=|usr=}}
+{{tp|p=34477316|t=2021. SGLT2-Inhibition reverts urinary peptide changes associated with severe COVID-19: An in-silico proof-of-principle of proteomics-based drug repurposing.|pdf=|usr=}}
+{{tp|p=34478921|t=2021. Meta-analysis of single-cell RNA-seq data reveals phenotypic switching of immune cells in severe COVID-19 patients.|pdf=|usr=}}
+{{tp|p=34482267|t=2021. Prediction and analysis of microRNAs involved in COVID-19 inflammatory processes associated with the NF-kB and JAK/STAT signaling pathways.|pdf=|usr=}}
+{{tp|p=34488908|t=2021. Differential roles of RIG-I like receptors in SARS-CoV-2 infection.|pdf=|usr=}}
+{{tp|p=34489933|t=2021. Cytokine Signature Associated With Disease Severity in COVID-19.|pdf=|usr=}}
+{{tp|p=34492226|t=2021. The interferon landscape along the respiratory tract impacts the severity of COVID-19.|pdf=|usr=}}
+{{tp|p=34494892|t=2022. Implications of the NADase CD38 in COVID pathophysiology.|pdf=|usr=}}
+{{tp|p=34496960|t=2021. Inferring SARS-CoV-2 functional genomics from viral transcriptome with identification of potential antiviral drugs and therapeutic targets.|pdf=|usr=}}
+{{tp|p=34497809|t=2021. Transcriptomic Signatures of Airway Epithelium Infected With SARS-CoV-2: A Balance Between Anti-infection and Virus Load.|pdf=|usr=}}
+{{tp|p=34502105|t=2021. microRNA-146a-5p, Neurotropic Viral Infection and Prion Disease (PrD).|pdf=|usr=}}
+{{tp|p=34502134|t=2021. SARS-CoV-2 Impairs Dendritic Cells and Regulates DC-SIGN Gene Expression in Tissues.|pdf=|usr=}}
+{{tp|p=34502454|t=2021. The Serum Metabolome of Moderate and Severe COVID-19 Patients Reflects Possible Liver Alterations Involving Carbon and Nitrogen Metabolism.|pdf=|usr=}}
+{{tp|p=34504087|t=2021. Sequences in the cytoplasmic tail of SARS-CoV-2 Spike facilitate expression at the cell surface and syncytia formation.|pdf=|usr=}}
+{{tp|p=34504487|t=2021. Biomarkers and Immune Repertoire Metrics Identified by Peripheral Blood Transcriptomic Sequencing Reveal the Pathogenesis of COVID-19.|pdf=|usr=}}
+{{tp|p=34504502|t=2021. The Molecular Mechanism of Multiple Organ Dysfunction and Targeted Intervention of COVID-19 Based on Time-Order Transcriptomic Analysis.|pdf=|usr=}}
+{{tp|p=34505137|t=2022. Serverless computing in omics data analysis and integration.|pdf=|usr=}}
+{{tp|p=34506304|t=2021. Tie2 activation protects against prothrombotic endothelial dysfunction in COVID-19.|pdf=|usr=}}
+{{tp|p=34506752|t=2021. Molecular Profiling of Coronavirus Disease 2019 (COVID-19) Autopsies Uncovers Novel Disease Mechanisms.|pdf=|usr=}}
+{{tp|p=34508917|t=2021. Autoimmunity roots of the thrombotic events after COVID-19 vaccination.|pdf=|usr=}}
+{{tp|p=34511738|t=2021. CovH2SD: A COVID-19 detection approach based on Harris Hawks Optimization and stacked deep learning.|pdf=|usr=}}
+{{tp|p=34511970|t=2021. Alterations in the Plasma Proteome Induced by SARS-CoV-2 and MERS-CoV Reveal Biomarkers for Disease Outcomes for COVID-19 Patients.|pdf=|usr=}}
+{{tp|p=34512253|t=2021. Nervous System-Systemic Crosstalk in SARS-CoV-2/COVID-19: A Unique Dyshomeostasis Syndrome.|pdf=|usr=}}
+{{tp|p=34512723|t=2021. ACE2 Netlas: In silico Functional Characterization and Drug-Gene Interactions of ACE2 Gene Network to Understand Its Potential Involvement in COVID-19 Susceptibility.|pdf=|usr=}}
+{{tp|p=34513131|t=2021. Mass Spectrometry-based Proteomics and Glycoproteomics in COVID-19 Biomarkers Identification: A Mini-review.|pdf=|usr=}}
+{{tp|p=34516880|t=2021. Platelets amplify endotheliopathy in COVID-19.|pdf=|usr=}}
+{{tp|p=34517025|t=2021. Genomics-guided targeting of stress granule proteins G3BP1/2 to inhibit SARS-CoV-2 propagation.|pdf=|usr=}}
+{{tp|p=34517257|t=2021. Dehydrozingerone ameliorates Lipopolysaccharide induced acute respiratory distress syndrome by inhibiting cytokine storm, oxidative stress via modulating the MAPK/NF-kappaB pathway.|pdf=|usr=}}
+{{tp|p=34518653|t=2022. Fatal cytokine release syndrome by an aberrant FLIP/STAT3 axis.|pdf=|usr=}}
+{{tp|p=34519533|t=2021. Target Discovery for Host-Directed Antiviral Therapies: Application of Proteomics Approaches.|pdf=|usr=}}
+{{tp|p=34522117|t=2021. Plasma Metabolomic Profiles in Recovered COVID-19 Patients without Previous Underlying Diseases 3 Months After Discharge.|pdf=|usr=}}
+{{tp|p=34523966|t=2021. The NF-kappaB Transcriptional Footprint Is Essential for SARS-CoV-2 Replication.|pdf=|usr=}}
+{{tp|p=34524690|t=2022. Assessment of two-pool multiplex long-amplicon nanopore sequencing of SARS-CoV-2.|pdf=|usr=}}
+{{tp|p=34531370|t=2021. Single-cell immune profiling reveals distinct immune response in asymptomatic COVID-19 patients.|pdf=|usr=}}
+{{tp|p=34531741|t=2021. Identification of Novel Gene Signatures using Next-Generation Sequencing Data from COVID-19 Infection Models: Focus on Neuro-COVID and Potential Therapeutics.|pdf=|usr=}}
+{{tp|p=34531865|t=2021. Host Genetics and Antiviral Immune Responses in Adult Patients With Multisystem Inflammatory Syndrome.|pdf=|usr=}}
+{{tp|p=34534839|t=2021. Indomethacin-based PROTACs as pan-coronavirus antiviral agents.|pdf=|usr=}}
+{{tp|p=34534994|t=2021. Host genetics of pediatric SARS-CoV-2 COVID-19 and multisystem inflammatory syndrome in children.|pdf=|usr=}}
+{{tp|p=34535662|t=2021. A CRISPR/Cas9 genetically engineered organoid biobank reveals essential host factors for coronaviruses.|pdf=|usr=}}
+{{tp|p=34535740|t=2021. Prolyl isomerase Pin1 plays an essential role in SARS-CoV-2 proliferation, indicating its possibility as a novel therapeutic target.|pdf=|usr=}}
+{{tp|p=34535791|t=2021. Structural biology of SARS-CoV-2 and implications for therapeutic development.|pdf=|usr=}}
+{{tp|p=34535795|t=2022. Network-based analysis revealed significant interactions between risk genes of severe COVID-19 and host genes interacted with SARS-CoV-2 proteins.|pdf=|usr=}}
+{{tp|p=34536277|t=2021. Low Environmental Temperature Exacerbates Severe Acute Respiratory Syndrome Coronavirus 2 Infection in Golden Syrian Hamsters.|pdf=|usr=}}
+{{tp|p=34538015|t=2021. Platelets contribute to disease severity in COVID-19.|pdf=|usr=}}
+{{tp|p=34538334|t=2021. Fecal multi-omics analysis reveals diverse molecular alterations of gut ecosystem in COVID-19 patients.|pdf=|usr=}}
+{{tp|p=34539756|t=2021. Network-Based Identification and Experimental Validation of Drug Candidates Toward SARS-CoV-2 via Targeting Virus-Host Interactome.|pdf=|usr=}}
+{{tp|p=34541422|t=2021. Nicotinamide Adenine Dinucleotide Biosynthetic Impairment and Urinary Metabolomic Alterations Observed in Hospitalized Adults With COVID-19-Related Acute Kidney Injury.|pdf=|usr=}}
+{{tp|p=34541878|t=2021. Activation of Type I and Type II Interferon Signaling in SARS-CoV-2-Positive Thyroid Tissue of Patients Dying from COVID-19.|pdf=|usr=}}
+{{tp|p=34542605|t=2021. Suppressing STAT3 activity protects the endothelial barrier from VEGF-mediated vascular permeability.|pdf=|usr=}}
+{{tp|p=34545347|t=2021. The circadian clock component BMAL1 regulates SARS-CoV-2 entry and replication in lung epithelial cells.|pdf=|usr=}}
+{{tp|p=34545375|t=2021. Olfactory Bulb and Amygdala Gene Expression Changes in Subjects Dying with COVID-19.|pdf=|usr=}}
+{{tp|p=34545716|t=2021. Potential of application of the RNA interference phenomenon in the treatment of new coronavirus infection COVID-19.|pdf=|usr=}}
+{{tp|p=34548480|t=2021. Characterising proteolysis during SARS-CoV-2 infection identifies viral cleavage sites and cellular targets with therapeutic potential.|pdf=|usr=}}
+{{tp|p=34552685|t=2021. Infrared light therapy relieves TLR-4 dependent hyper-inflammation of the type induced by COVID-19.|pdf=|usr=}}
+{{tp|p=34556735|t=2021. Network neighbors of viral targets and differentially expressed genes in COVID-19 are drug target candidates.|pdf=|usr=}}
+{{tp|p=34558746|t=2021. Dynamic changes in human single-cell transcriptional signatures during fatal sepsis.|pdf=|usr=}}
+{{tp|p=34560321|t=2021. Gut Microbiome Alterations in COVID-19.|pdf=|usr=}}
+{{tp|p=34562452|t=2021. An atomistic model of the coronavirus replication-transcription complex as a hexamer assembled around nsp15.|pdf=|usr=}}
+{{tp|p=34562466|t=2022. Mechanisms of Antiviral Immune Evasion of SARS-CoV-2.|pdf=|usr=}}
+{{tp|p=34562480|t=2022. Periodically aperiodic pattern of SARS-CoV-2 mutations underpins the uncertainty of its origin and evolution.|pdf=|usr=}}
+{{tp|p=34565757|t=2021. AI for the collective analysis of a massive number of genome sequences: various examples from the small genome of pandemic SARS-CoV-2 to the human genome.|pdf=|usr=}}
+{{tp|p=34566957|t=2021. Redefining COVID-19 Severity and Prognosis: The Role of Clinical and Immunobiotypes.|pdf=|usr=}}
+{{tp|p=34566994|t=2021. Characterization by Quantitative Serum Proteomics of Immune-Related Prognostic Biomarkers for COVID-19 Symptomatology.|pdf=|usr=}}
+{{tp|p=34567001|t=2021. Persistent High Percentage of HLA-DR(+)CD38(high) CD8(+) T Cells Associated With Immune Disorder and Disease Severity of COVID-19.|pdf=|usr=}}
+{{tp|p=34569339|t=2021. A scoping review of the pathophysiology of COVID-19.|pdf=|usr=}}
+{{tp|p=34571150|t=2022. Transcriptome analysis of host response to porcine epidemic diarrhea virus nsp15 in IPEC-J2 cells.|pdf=|usr=}}
+{{tp|p=34571838|t=2021. Transcriptomic Analysis of HCN-2 Cells Suggests Connection among Oxidative Stress, Senescence, and Neuron Death after SARS-CoV-2 Infection.|pdf=|usr=}}
+{{tp|p=34571855|t=2021. Two-Step In Vitro Model to Evaluate the Cellular Immune Response to SARS-CoV-2.|pdf=|usr=}}
+{{tp|p=34572076|t=2021. Host Cell and SARS-CoV-2-Associated Molecular Structures and Factors as Potential Therapeutic Targets.|pdf=|usr=}}
+{{tp|p=34572329|t=2021. Epigenetic Mechanisms Underlying COVID-19 Pathogenesis.|pdf=|usr=}}
+{{tp|p=34576716|t=2021. TLR3 and TLR7 RNA Sensor Activation during SARS-CoV-2 Infection.|pdf=|usr=}}
+{{tp|p=34578187|t=2021. Interactome Analysis of the Nucleocapsid Protein of SARS-CoV-2 Virus.|pdf=|usr=}}
+{{tp|p=34578338|t=2021. Enrichment of SARS-CoV-2 Entry Factors and Interacting Intracellular Genes in Tissue and Circulating Immune Cells.|pdf=|usr=}}
+{{tp|p=34580297|t=2021. Characterization and structural basis of a lethal mouse-adapted SARS-CoV-2.|pdf=|usr=}}
+{{tp|p=34580601|t=2021. Network Pharmacology Reveals That Resveratrol Can Alleviate COVID-19-Related Hyperinflammation.|pdf=|usr=}}
+{{tp|p=34580671|t=2021. A BioID-derived proximity interactome for SARS-CoV-2 proteins.|pdf=|usr=}}
+{{tp|p=34581622|t=2021. A prenylated dsRNA sensor protects against severe COVID-19.|pdf=|usr=}}
+{{tp|p=34582564|t=2022. Adipose tissue and blood leukocytes ACE2 DNA methylation in obesity and after weight loss.|pdf=|usr=}}
+{{tp|p=34584097|t=2021. In vivo structure and dynamics of the SARS-CoV-2 RNA genome.|pdf=|usr=}}
+{{tp|p=34586723|t=2021. Host transcriptional response to SARS-CoV-2 infection in COVID-19 patients.|pdf=|usr=}}
+{{tp|p=34587478|t=2021. Single-cell analysis of COVID-19, sepsis, and HIV infection reveals hyperinflammatory and immunosuppressive signatures in monocytes.|pdf=|usr=}}
+{{tp|p=34592166|t=2021. Early IFN-alpha signatures and persistent dysfunction are distinguishing features of NK cells in severe COVID-19.|pdf=|usr=}}
+{{tp|p=34594031|t=2021. Systematic investigation of cytokine signaling activity at the tissue and single-cell levels.|pdf=|usr=}}
+{{tp|p=34594344|t=2021. Combined Transcriptome and Proteome Leukocyte's Profiling Reveals Up-Regulated Module of Genes/Proteins Related to Low Density Neutrophils and Impaired Transcription and Translation Processes in Clinical Sepsis.|pdf=|usr=}}
+{{tp|p=34597346|t=2021. The proximal proteome of 17 SARS-CoV-2 proteins links to disrupted antiviral signaling and host translation.|pdf=|usr=}}
+{{tp|p=34598020|t=2021. Solar simulated ultraviolet radiation inactivates HCoV-NL63 and SARS-CoV-2 coronaviruses at environmentally relevant doses.|pdf=|usr=}}
+{{tp|p=34601331|t=2021. Cytokine storm in the pathophysiology of COVID-19: Possible functional disturbances of miRNAs.|pdf=|usr=}}
+{{tp|p=34601771|t=2022. PDB-101: Educational resources supporting molecular explorations through biology and medicine.|pdf=|usr=}}
+{{tp|p=34603282|t=2021. On Deep Landscape Exploration of COVID-19 Patients Cells and Severity Markers.|pdf=|usr=}}
+{{tp|p=34603366|t=2021. Graph Representation Forecasting of Patient's Medical Conditions: Toward a Digital Twin.|pdf=|usr=}}
+{{tp|p=34603483|t=2021. Identification of Novel COVID-19 Biomarkers by Multiple Feature Selection Strategies.|pdf=|usr=}}
+{{tp|p=34604700|t=2021. Association of Asthma and Rhinitis with Epigenetics of Coronavirus Related Genes.|pdf=|usr=}}
+{{tp|p=34604720|t=2021. The nasal symbiont Staphylococcus species restricts the transcription of SARS-CoV-2 entry factors in human nasal epithelium.|pdf=|usr=}}
+{{tp|p=34608452|t=2021. Limited TCR repertoire and ENTPD1 dysregulation mark late-stage COVID-19.|pdf=|usr=}}
+{{tp|p=34612687|t=2021. PABPC4 Broadly Inhibits Coronavirus Replication by Degrading Nucleocapsid Protein through Selective Autophagy.|pdf=|usr=}}
+{{tp|p=34612698|t=2021. Upregulation of Human Endogenous Retroviruses in Bronchoalveolar Lavage Fluid of COVID-19 Patients.|pdf=|usr=}}
+{{tp|p=34615934|t=2021. Drug repositioning by merging active subnetworks validated in cancer and COVID-19.|pdf=|usr=}}
+{{tp|p=34615949|t=2021. Transcriptomic analysis revealed increased expression of genes involved in keratinization in the tears of COVID-19 patients.|pdf=|usr=}}
+{{tp|p=34616396|t=2021. SARS-CoV-2 Coronavirus Spike Protein-Induced Apoptosis, Inflammatory, and Oxidative Stress Responses in THP-1-Like-Macrophages: Potential Role of Angiotensin-Converting Enzyme Inhibitor (Perindopril).|pdf=|usr=}}
+{{tp|p=34619366|t=2021. Metabolic Perturbation Associated With COVID-19 Disease Severity and SARS-CoV-2 Replication.|pdf=|usr=}}
+{{tp|p=34620315|t=2021. mNUTRIC tool is capable to predict nutritional needs and mortality early in patients suffering from severe pneumonia.|pdf=|usr=}}
+{{tp|p=34624207|t=2021. The N-terminal domain of SARS-CoV-2 nsp1 plays key roles in suppression of cellular gene expression and preservation of viral gene expression.|pdf=|usr=}}
+{{tp|p=34624208|t=2021. Role of miR-2392 in driving SARS-CoV-2 infection.|pdf=|usr=}}
+{{tp|p=34630400|t=2021. Identification of Unique Peptides for SARS-CoV-2 Diagnostics and Vaccine Development by an In Silico Proteomics Approach.|pdf=|usr=}}
+{{tp|p=34630427|t=2021. Profile of Immunoglobulin G N-Glycome in COVID-19 Patients: A Case-Control Study.|pdf=|usr=}}
+{{tp|p=34630432|t=2021. Comprehensive Immune Profiling of a Kidney Transplant Recipient With Peri-Operative SARS-CoV-2 Infection: A Case Report.|pdf=|usr=}}
+{{tp|p=34630433|t=2021. Diversity of Macrophages in Lung Homeostasis and Diseases.|pdf=|usr=}}
+{{tp|p=34632957|t=2021. Colonic expression of Ace2, the SARS-CoV-2 entry receptor, is suppressed by commensal human microbiota.|pdf=|usr=}}
+{{tp|p=34633277|t=2022. Indomethacin: an exploratory study of antiviral mechanism and host-pathogen interaction in COVID-19.|pdf=|usr=}}
+{{tp|p=34638691|t=2021. The MiR-320 Family Is Strongly Downregulated in Patients with COVID-19 Induced Severe Respiratory Failure.|pdf=|usr=}}
+{{tp|p=34638812|t=2021. Untargeted Metabolic Profiling of Extracellular Vesicles of SARS-CoV-2-Infected Patients Shows Presence of Potent Anti-Inflammatory Metabolites.|pdf=|usr=}}
+{{tp|p=34642692|t=2021. Longitudinal characterization of circulating neutrophils uncovers distinct phenotypes associated with disease severity in hospitalized COVID-19 patients.|pdf=|usr=}}
+{{tp|p=34642700|t=2021. Acute COVID-19 gene-expression profiles show multiple etiologies of long-term sequelae.|pdf=|usr=}}
+{{tp|p=34643448|t=2021. Oral Microbiome Alterations and SARS-CoV-2 Saliva Viral Load in Patients with COVID-19.|pdf=|usr=}}
+{{tp|p=34644561|t=2021. Proteomics reveal cap-dependent translation inhibitors remodel the translation machinery and translatome.|pdf=|usr=}}
+{{tp|p=34647998|t=2022. Cardiac SARS-CoV-2 infection is associated with pro-inflammatory transcriptomic alterations within the heart.|pdf=|usr=}}
+{{tp|p=34650546|t=2021. ORF3a Protein of Severe Acute Respiratory Syndrome Coronavirus 2 Inhibits Interferon-Activated Janus Kinase/Signal Transducer and Activator of Transcription Signaling via Elevating Suppressor of Cytokine Signaling 1.|pdf=|usr=}}
+{{tp|p=34653729|t=2021. In vitro induction of interleukin-8 by SARS-CoV-2 Spike protein is inhibited in bronchial epithelial IB3-1 cells by a miR-93-5p agomiR.|pdf=|usr=}}
+{{tp|p=34655901|t=2021. Interactome of human and SARS-CoV-2 proteins to identify human hub proteins associated with comorbidities.|pdf=|usr=}}
+{{tp|p=34659188|t=2021. Coronavirus Nsp1: Immune Response Suppression and Protein Expression Inhibition.|pdf=|usr=}}
+{{tp|p=34659213|t=2021. Monocyte Chemotactic Protein-Induced Protein 1 (MCPIP-1): A Key Player of Host Defense and Immune Regulation.|pdf=|usr=}}
+{{tp|p=34659373|t=2021. Theoretical Analysis of S, M and N Structural Proteins by the Protein-RNA Recognition Code Leads to Genes/proteins that Are Relevant to the SARS-CoV-2 Life Cycle and Pathogenesis.|pdf=|usr=}}
+{{tp|p=34660538|t=2021. Machine Learning of Serum Metabolic Patterns Encodes Asymptomatic SARS-CoV-2 Infection.|pdf=|usr=}}
+{{tp|p=34661254|t=2021. Modulation of host epigenome by coronavirus infections and developing treatment modalities for COVID-19 beyond genetics.|pdf=|usr=}}
+{{tp|p=34662402|t=2022. Detection of Neanderthal Adaptively Introgressed Genetic Variants That Modulate Reporter Gene Expression in Human Immune Cells.|pdf=|usr=}}
+{{tp|p=34663977|t=2021. Altered ISGylation drives aberrant macrophage-dependent immune responses during SARS-CoV-2 infection.|pdf=|usr=}}
+{{tp|p=34669152|t=2022. Deciphering the link between Diabetes mellitus and SARS-CoV-2 infection through differential targeting of microRNAs in the human pancreas.|pdf=|usr=}}
+{{tp|p=34670213|t=2022. The Gene Signature of Activated M-CSF-Primed Human Monocyte-Derived Macrophages Is IL-10-Dependent.|pdf=|usr=}}
+{{tp|p=34671206|t=2021. The intraviral protein-protein interaction of SARS-CoV-2 reveals the key role of N protein in virus-like particle assembly.|pdf=|usr=}}
+{{tp|p=34671355|t=2021. Defining the Innate Immune Responses for SARS-CoV-2-Human Macrophage Interactions.|pdf=|usr=}}
+{{tp|p=34672376|t=2022. Role of toll-like receptors in modulation of cytokine storm signaling in SARS-CoV-2-induced COVID-19.|pdf=|usr=}}
+{{tp|p=34672606|t=2021. Advances and Utility of the Human Plasma Proteome.|pdf=|usr=}}
+{{tp|p=34672947|t=2021. Mechanistic insights into COVID-19 by global analysis of the SARS-CoV-2 3CL(pro) substrate degradome.|pdf=|usr=}}
+{{tp|p=34672954|t=2022. An antibody-based proximity labeling map reveals mechanisms of SARS-CoV-2 inhibition of antiviral immunity.|pdf=|usr=}}
+{{tp|p=34675048|t=2022. Profiling of lung SARS-CoV-2 and influenza virus infection dissects virus-specific host responses and gene signatures.|pdf=|usr=}}
+{{tp|p=34675242|t=2021. Meta-analysis of COVID-19 single-cell studies confirms eight key immune responses.|pdf=|usr=}}
+{{tp|p=34675292|t=2021. Inferring a causal relationship between ceramide levels and COVID-19 respiratory distress.|pdf=|usr=}}
+{{tp|p=34675930|t=2021. Blood Transcriptomes of Anti-SARS-CoV-2 Antibody-Positive Healthy Individuals Who Experienced Asymptomatic Versus Clinical Infection.|pdf=|usr=}}
+{{tp|p=34676128|t=2020. Plasma metabolomic and lipidomic alterations associated with COVID-19.|pdf=|usr=}}
+{{tp|p=34677374|t=2021. SARS-CoV2 Infection Alters Tryptophan Catabolism and Phospholipid Metabolism.|pdf=|usr=}}
+{{tp|p=34677415|t=2021. Targeting the Pentose Phosphate Pathway for SARS-CoV-2 Therapy.|pdf=|usr=}}
+{{tp|p=34678084|t=2021. Top Trends in Multiomics Research: Evaluation of 52 Published Studies and New Ways of Thinking Terminology and Visual Displays.|pdf=|usr=}}
+{{tp|p=34681641|t=2021. G-Quadruplex Targeting in the Fight against Viruses: An Update.|pdf=|usr=}}
+{{tp|p=34681944|t=2021. Alveolar Regeneration in COVID-19 Patients: A Network Perspective.|pdf=|usr=}}
+{{tp|p=34686343|t=2021. Compartmentalization-aided interaction screening reveals extensive high-order complexes within the SARS-CoV-2 proteome.|pdf=|usr=}}
+{{tp|p=34686777|t=2021. Accurate detection and quantification of SARS-CoV-2 genomic and subgenomic mRNAs by ddPCR and meta-transcriptomics analysis.|pdf=|usr=}}
+{{tp|p=34687295|t=2021. Transcriptomic characteristics and impaired immune function of patients who retest positive for SARS-CoV-2 RNA.|pdf=|usr=}}
+{{tp|p=34687317|t=2021. Interactome profiling reveals interaction of SARS-CoV-2 NSP13 with host factor STAT1 to suppress interferon signaling.|pdf=|usr=}}
+{{tp|p=34691068|t=2021. COVID-19 Is a Multi-Organ Aggressor: Epigenetic and Clinical Marks.|pdf=|usr=}}
+{{tp|p=34694399|t=2021. ADAR Editing in Viruses: An Evolutionary Force to Reckon with.|pdf=|usr=}}
+{{tp|p=34695380|t=2021. Folding Intermediates, Heterogeneous Native Ensembles and Protein Function.|pdf=|usr=}}
+{{tp|p=34696164|t=2021. SnoRNAs and miRNAs Networks Underlying COVID-19 Disease Severity.|pdf=|usr=}}
+{{tp|p=34696353|t=2021. SARS-CoV-2 Subgenomic RNAs: Characterization, Utility, and Perspectives.|pdf=|usr=}}
+{{tp|p=34697287|t=2021. Comprehensive investigations revealed consistent pathophysiological alterations after vaccination with COVID-19 vaccines.|pdf=|usr=}}
+{{tp|p=34698500|t=2022. Identification of driver genes for critical forms of COVID-19 in a deeply phenotyped young patient cohort.|pdf=|usr=}}
+{{tp|p=34698547|t=2021. Pathogenesis, Symptomatology, and Transmission of SARS-CoV-2 through Analysis of Viral Genomics and Structure.|pdf=|usr=}}
+{{tp|p=34702802|t=2021. SARS-CoV-2 exploits host DGAT and ADRP for efficient replication.|pdf=|usr=}}
+{{tp|p=34708437|t=2022. Uneven metabolic and lipidomic profiles in recovered COVID-19 patients as investigated by plasma NMR metabolomics.|pdf=|usr=}}
+{{tp|p=34709564|t=2022. SARS-CoV-2 Spike Glycoprotein S1 Induces Neuroinflammation in BV-2 Microglia.|pdf=|usr=}}
+{{tp|p=34709707|t=2021. Genome-scale metabolic modeling reveals SARS-CoV-2-induced metabolic changes and antiviral targets.|pdf=|usr=}}
+{{tp|p=34709727|t=2021. SARS-CoV-2-host proteome interactions for antiviral drug discovery.|pdf=|usr=}}
+{{tp|p=34710339|t=2022. Tissue Proteomic Analysis Identifies Mechanisms and Stages of Immunopathology in Fatal COVID-19.|pdf=|usr=}}
+{{tp|p=34715493|t=2021. Topoisomerase 2 inhibitor etoposide promotes interleukin-10 production in LPS-induced macrophages via upregulating transcription factor Maf and activating PI3K/Akt pathway.|pdf=|usr=}}
+{{tp|p=34715923|t=2021. Dysregulation of RNA interference components in COVID-19 patients.|pdf=|usr=}}
+{{tp|p=34716309|t=2021. Multi-omic approach identifies a transcriptional network coupling innate immune response to proliferation in the blood of COVID-19 cancer patients.|pdf=|usr=}}
+{{tp|p=34722002|t=2021. HLA alleles measured from COVID-19 patient transcriptomes reveal associations with disease prognosis in a New York cohort.|pdf=|usr=}}
+{{tp|p=34722003|t=2021. Effect of SARS-CoV-2 infection on host competing endogenous RNA and miRNA network.|pdf=|usr=}}
+{{tp|p=34722158|t=2022. MicroRNAs based regulation of cytokine regulating immune expressed genes and their transcription factors in COVID-19.|pdf=|usr=}}
+{{tp|p=34722346|t=2021. Genomic Variations in the Structural Proteins of SARS-CoV-2 and Their Deleterious Impact on Pathogenesis: A Comparative Genomics Approach.|pdf=|usr=}}
+{{tp|p=34723157|t=2021. Maturation trajectories and transcriptional landscape of plasmablasts and autoreactive B cells in COVID-19.|pdf=|usr=}}
+{{tp|p=34723226|t=2021. The systemic inflammatory landscape of COVID-19 in pregnancy: Extensive serum proteomic profiling of mother-infant dyads with in utero SARS-CoV-2.|pdf=|usr=}}
+{{tp|p=34725650|t=2021. The severity of SARS-CoV-2 infection is dictated by host factors? Epigenetic perspectives.|pdf=|usr=}}
+{{tp|p=34729561|t=2021. An Autoantigen Profile from Jurkat T-Lymphoblasts Provides a Molecular Guide for Investigating Autoimmune Sequelae of COVID-19.|pdf=|usr=}}
+{{tp|p=34730223|t=2021. Identification of hub genes and molecular subtypes in COVID-19 based on WGCNA.|pdf=|usr=}}
+{{tp|p=34730254|t=2021. Corticosteroid treatment in COVID-19 modulates host inflammatory responses and transcriptional signatures of immune dysregulation.|pdf=|usr=}}
+{{tp|p=34731091|t=2021. SARS-CoV-2 infection mediates differential expression of human endogenous retroviruses and long interspersed nuclear elements.|pdf=|usr=}}
+{{tp|p=34731648|t=2021. An airway organoid-based screen identifies a role for the HIF1alpha-glycolysis axis in SARS-CoV-2 infection.|pdf=|usr=}}
+{{tp|p=34732330|t=2022. Nrf2/Keap1/ARE signaling: Towards specific regulation.|pdf=|usr=}}
+{{tp|p=34732709|t=2021. Sensing of cytoplasmic chromatin by cGAS activates innate immune response in SARS-CoV-2 infection.|pdf=|usr=}}
+{{tp|p=34734602|t=2021. Harnessing stress granule formation by small molecules to inhibit the cellular replication of SARS-CoV-2.|pdf=|usr=}}
+{{tp|p=34735713|t=2022. Metabolomics Signatures of SARS-CoV-2 Infection.|pdf=|usr=}}
+{{tp|p=34737357|t=2022. Comparison of viral RNA-host protein interactomes across pathogenic RNA viruses informs rapid antiviral drug discovery for SARS-CoV-2.|pdf=|usr=}}
+{{tp|p=34740309|t=2021. Bioinformatics analyses reveal cell-barrier junction modulations in lung epithelial cells on SARS-CoV-2 infection.|pdf=|usr=}}
+{{tp|p=34741638|t=2022. Aging whole blood transcriptome reveals candidate genes for SARS-CoV-2-related vascular and immune alterations.|pdf=|usr=}}
+{{tp|p=34745097|t=2021. The Omic Insights on Unfolding Saga of COVID-19.|pdf=|usr=}}
+{{tp|p=34746476|t=2021. Metabologenomics approach to the discovery of novel compounds from Streptomyces sp. GMR22 as anti-SARS-CoV-2 drugs.|pdf=|usr=}}
+{{tp|p=34746710|t=2021. Influenza A induces lactate formation to inhibit type I IFN in primary human airway epithelium.|pdf=|usr=}}
+{{tp|p=34746856|t=2021. Computational workflow for functional characterization of COVID-19 through secondary data analysis.|pdf=|usr=}}
+{{tp|p=34748989|t=2021. COVID-ONE-hi: The One-stop Database for COVID-19-specific Humoral Immunity and Clinical Parameters.|pdf=|usr=}}
+{{tp|p=34750486|t=2021. Drug repurposing for coronavirus (SARS-CoV-2) based on gene co-expression network analysis.|pdf=|usr=}}
+{{tp|p=34750520|t=2022. Single-cell immunophenotyping of the fetal immune response to maternal SARS-CoV-2 infection in late gestation.|pdf=|usr=}}
+{{tp|p=34755842|t=2022. Association of cardiometabolic microRNAs with COVID-19 severity and mortality.|pdf=|usr=}}
+{{tp|p=34756970|t=2021. SARS-COV-2, infection, transmission, transcription, translation, proteins, and treatment: A review.|pdf=|usr=}}
+{{tp|p=34757528|t=2021. Network Meta-analysis on the Changes of Amyloid Precursor Protein Expression Following SARS-CoV-2 Infection.|pdf=|usr=}}
+{{tp|p=34757848|t=2022. A Structurally Conserved RNA Element within SARS-CoV-2 ORF1a RNA and S mRNA Regulates Translation in Response to Viral S Protein-Induced Signaling in Human Lung Cells.|pdf=|usr=}}
+{{tp|p=34758415|t=2021. Pathogenic and transcriptomic differences of emerging SARS-CoV-2 variants in the Syrian golden hamster model.|pdf=|usr=}}
+{{tp|p=34758478|t=2022. Pre-existing polymerase-specific T cells expand in abortive seronegative SARS-CoV-2.|pdf=|usr=}}
+{{tp|p=34762662|t=2021. Targeted proteomics as a tool to detect SARS-CoV-2 proteins in clinical specimens.|pdf=|usr=}}
+{{tp|p=34762851|t=2021. SARS-CoV-2 susceptibility and COVID-19 disease severity are associated with genetic variants affecting gene expression in a variety of tissues.|pdf=|usr=}}
+{{tp|p=34764623|t=2022. Decision and feature level fusion of deep features extracted from public COVID-19 data-sets.|pdf=|usr=}}
+{{tp|p=34771023|t=2021. Zinc as a Drug for Wilson's Disease, Non-Alcoholic Liver Disease and COVID-19-Related Liver Injury.|pdf=|usr=}}
+{{tp|p=34773448|t=2021. C-reactive protein as an effector molecule in Covid-19 pathogenesis.|pdf=|usr=}}
+{{tp|p=34774005|t=2021. Using genetics to understand the role of kidney function in COVID-19: a mendelian randomization study.|pdf=|usr=}}
+{{tp|p=34774773|t=2021. Integrative Multi-omics Landscape of Non-structural Protein 3 of Severe Acute Respiratory Syndrome Coronaviruses.|pdf=|usr=}}
+{{tp|p=34774827|t=2022. Serum level of testosterone predicts disease severity of male COVID-19 patients and is related to T-cell immune modulation by transcriptome analysis.|pdf=|usr=}}
+{{tp|p=34775353|t=2021. Genome-wide association study of hospitalized COVID-19 patients in the United Arab Emirates.|pdf=|usr=}}
+{{tp|p=34775559|t=2022. Bioinformatics approach to identify common gene signatures of patients with coronavirus 2019 and lung adenocarcinoma.|pdf=|usr=}}
+{{tp|p=34775962|t=2021. Analysis of transcriptomic data sets supports the role of IL-6 in NETosis and immunothrombosis in severe COVID-19.|pdf=|usr=}}
+{{tp|p=34776871|t=2021. PTSD as an Endothelial Disease: Insights From COVID-19.|pdf=|usr=}}
+{{tp|p=34777349|t=2021. Plasma Gradient of Soluble Urokinase-Type Plasminogen Activator Receptor Is Linked to Pathogenic Plasma Proteome and Immune Transcriptome and Stratifies Outcomes in Severe COVID-19.|pdf=|usr=}}
+{{tp|p=34777369|t=2021. Genome-Wide Profiling Reveals Alternative Polyadenylation of Innate Immune-Related mRNA in Patients With COVID-19.|pdf=|usr=}}
+{{tp|p=34777716|t=2021. Lipidomics and metabolomics signatures of SARS-CoV-2 mediators/receptors in peripheral leukocytes, jejunum and colon.|pdf=|usr=}}
+{{tp|p=34778851|t=2022. Machine learning and network medicine approaches for drug repositioning for COVID-19.|pdf=|usr=}}
+{{tp|p=34781739|t=2021. A Bacterial Cell-Based Assay To Study SARS-CoV-2 Protein-Protein Interactions.|pdf=|usr=}}
+{{tp|p=34781747|t=2021. A Previously Undiscovered Circular RNA, circTNFAIP3, and Its Role in Coronavirus Replication.|pdf=|usr=}}
+{{tp|p=34781986|t=2021. Metabolomic diferences between COVID-19 and H1N1 influenza induced ARDS.|pdf=|usr=}}
+{{tp|p=34782627|t=2021. SARS-CoV-2 inhibits induction of the MHC class I pathway by targeting the STAT1-IRF1-NLRC5 axis.|pdf=|usr=}}
+{{tp|p=34782790|t=2022. Dexamethasone modulates immature neutrophils and interferon programming in severe COVID-19.|pdf=|usr=}}
+{{tp|p=34786180|t=2021. On the Selectivity of Heparan Sulfate Recognition by SARS-CoV-2 Spike Glycoprotein.|pdf=|usr=}}
+{{tp|p=34786539|t=2021. Epigenetic glycosylation of SARS-CoV-2 impact viral infection through DC&L-SIGN receptors.|pdf=|usr=}}
+{{tp|p=34786557|t=2020. Plasmin Cascade Mediates Thrombotic Events in SARS-CoV-2 Infection via Complement and Platelet-Activating Systems.|pdf=|usr=}}
+{{tp|p=34787756|t=2022. Identification of Key Pathways and Genes in SARS-CoV-2 Infecting Human Intestines by Bioinformatics Analysis.|pdf=|usr=}}
+{{tp|p=34788642|t=2022. The role of microRNAs in solving COVID-19 puzzle from infection to therapeutics: A mini-review.|pdf=|usr=}}
+{{tp|p=34788843|t=2022. The reactome pathway knowledgebase 2022.|pdf=|usr=}}
+{{tp|p=34790191|t=2021. COVID-19 Mechanisms in the Human Body-What We Know So Far.|pdf=|usr=}}
+{{tp|p=34790908|t=2021. Metatranscriptomics to characterize respiratory virome, microbiome, and host response directly from clinical samples.|pdf=|usr=}}
+{{tp|p=34791032|t=2022. Detection of COVID-19 by Machine Learning Using Routine Laboratory Tests.|pdf=|usr=}}
+{{tp|p=34795232|t=2021. Jumper enables discontinuous transcript assembly in coronaviruses.|pdf=|usr=}}
+{{tp|p=34799561|t=2021. Large scale discovery of coronavirus-host factor protein interaction motifs reveals SARS-CoV-2 specific mechanisms and vulnerabilities.|pdf=|usr=}}
+{{tp|p=34801852|t=2022. Molecular pathways involved in COVID-19 and potential pathway-based therapeutic targets.|pdf=|usr=}}
+{{tp|p=34802985|t=2021. HDL proteome remodeling associates with COVID-19 severity.|pdf=|usr=}}
+{{tp|p=34804904|t=2021. Role of COVID 19 Inflammatory Markers in Rhino-Orbito-Cerebral Mucormycosis: A Case Study in Predisposed Patients at a Designated Nodal Centre.|pdf=|usr=}}
+{{tp|p=34807957|t=2021. Core genes involved in the regulation of acute lung injury and their association with COVID-19 and tumor progression: A bioinformatics and experimental study.|pdf=|usr=}}
+{{tp|p=34812416|t=2021. Immune system cells from COVID-19 patients display compromised mitochondrial-nuclear expression co-regulation and rewiring toward glycolysis.|pdf=|usr=}}
+{{tp|p=34812694|t=2021. Human bronchial-pulmonary proteomics in coronavirus disease 2019 (COVID-19) pandemic: applications and implications.|pdf=|usr=}}
+{{tp|p=34815890|t=2021. Multimodal Identification by Transcriptomics and Multiscale Bioassays of Active Components in Xuanfeibaidu Formula to Suppress Macrophage-Mediated Immune Response.|pdf=|usr=}}
+{{tp|p=34819170|t=2021. Epigenetic modifications in thymic epithelial cells: an evolutionary perspective for thymus atrophy.|pdf=|usr=}}
+{{tp|p=34819389|t=2022. ORAI1 Limits SARS-CoV-2 Infection by Regulating Tonic Type I IFN Signaling.|pdf=|usr=}}
+{{tp|p=34822387|t=2021. Single-Cell Multiomics Analysis for Drug Discovery.|pdf=|usr=}}
+{{tp|p=34824452|t=2022. Structures and functions of coronavirus replication-transcription complexes and their relevance for SARS-CoV-2 drug design.|pdf=|usr=}}
+{{tp|p=34826456|t=2022. Identifying potential novel insights for COVID-19 pathogenesis and therapeutics using an integrated bioinformatics analysis of host transcriptome.|pdf=|usr=}}
+{{tp|p=34830872|t=2021. Blood Cytokine Analysis Suggests That SARS-CoV-2 Infection Results in a Sustained Tumour Promoting Environment in Cancer Patients.|pdf=|usr=}}
+{{tp|p=34831176|t=2021. Impacts of p97 on Proteome Changes in Human Cells during Coronaviral Replication.|pdf=|usr=}}
+{{tp|p=34831243|t=2021. Characterization of RNA Sensing Pathways in Hepatoma Cell Lines and Primary Human Hepatocytes.|pdf=|usr=}}
+{{tp|p=34831290|t=2021. Endothelial Dysfunction through Oxidatively Generated Epigenetic Mark in Respiratory Viral Infections.|pdf=|usr=}}
+{{tp|p=34831321|t=2021. In Silico Identification and Clinical Validation of a Novel Long Non-Coding RNA/mRNA/miRNA Molecular Network for Potential Biomarkers for Discriminating SARS CoV-2 Infection Severity.|pdf=|usr=}}
+{{tp|p=34832622|t=2021. Single-Cell Genomics: Enabling the Functional Elucidation of Infectious Diseases in Multi-Cell Genomes.|pdf=|usr=}}
+{{tp|p=34834944|t=2021. Abnormal Blood Coagulation and Kidney Damage in Aged Hamsters Infected with Severe Acute Respiratory Syndrome Coronavirus 2.|pdf=|usr=}}
+{{tp|p=34835019|t=2021. Single-Cell RNAseq Profiling of Human gammadelta T Lymphocytes in Virus-Related Cancers and COVID-19 Disease.|pdf=|usr=}}
+{{tp|p=34835064|t=2021. CRISPR Screening: Molecular Tools for Studying Virus-Host Interactions.|pdf=|usr=}}
+{{tp|p=34837225|t=2022. COVID-19-specific metabolic imprint yields insights into multiorgan system perturbations.|pdf=|usr=}}
+{{tp|p=34837942|t=2021. A multitask transfer learning framework for the prediction of virus-human protein-protein interactions.|pdf=|usr=}}
+{{tp|p=34841243|t=2021. Genetic epidemiology using whole genome sequencing and haplotype networks revealed the linkage of SARS-CoV-2 infection in nosocomial outbreak.|pdf=|usr=}}
+{{tp|p=34841355|t=2021. A next generation sequencing (NGS) analysis to reveal genomic and proteomic mutation landscapes of SARS-CoV-2 in South Asia.|pdf=|usr=}}
+{{tp|p=34844191|t=2021. Next generation plasma proteome profiling of COVID-19 patients with mild to moderate symptoms.|pdf=|usr=}}
+{{tp|p=34844647|t=2021. treekoR: identifying cellular-to-phenotype associations by elucidating hierarchical relationships in high-dimensional cytometry data.|pdf=|usr=}}
+{{tp|p=34845370|t=2022. SARS-CoV-2 ORF10 suppresses the antiviral innate immune response by degrading MAVS through mitophagy.|pdf=|usr=}}
+{{tp|p=34845387|t=2021. A 3D structural SARS-CoV-2-human interactome to explore genetic and drug perturbations.|pdf=|usr=}}
+{{tp|p=34845442|t=2021. Severe COVID-19 infection is associated with aberrant cytokine production by infected lung epithelial cells rather than by systemic immune dysfunction.|pdf=|usr=}}
+{{tp|p=34845443|t=2021. Unambiguous detection of SARS-CoV-2 subgenomic mRNAs with single cell RNA sequencing.|pdf=|usr=}}
+{{tp|p=34845446|t=2021. Systematic temporal analysis of peripheral blood transcriptomes using TrendCatcher identifies early and persistent neutrophil activation as a hallmark of severe COVID-19.|pdf=|usr=}}
+{{tp|p=34845452|t=2021. Genome-wide characterization of SARS-CoV-2 cytopathogenic proteins in the search of antiviral targets.|pdf=|usr=}}
+{{tp|p=34845457|t=2021. Severe COVID-19 induces molecular signatures of aging in the human brain.|pdf=|usr=}}
+{{tp|p=34845458|t=2021. An immune correlate of SARS-CoV-2 infection and severity of reinfections.|pdf=|usr=}}
+{{tp|p=34848322|t=2022. Understanding the role of telomere attrition and epigenetic signatures in COVID-19 severity.|pdf=|usr=}}
+{{tp|p=34849574|t=2022. SC-MEB: spatial clustering with hidden Markov random field using empirical Bayes.|pdf=|usr=}}
+{{tp|p=34850892|t=2021. Gene Expression Risk Scores for COVID-19 Illness Severity.|pdf=|usr=}}
+{{tp|p=34851327|t=2021. Case Report: First Confirmed Case of Coinfection of SARS-CoV-2 With Choclo orthohantavirus.|pdf=|usr=}}
+{{tp|p=34851990|t=2021. Towards risk stratification and prediction of disease severity and mortality in COVID-19: Next generation metabolomics for the measurement of host response to COVID-19 infection.|pdf=|usr=}}
+{{tp|p=34857794|t=2021. Multiscale interactome analysis coupled with off-target drug predictions reveals drug repurposing candidates for human coronavirus disease.|pdf=|usr=}}
+{{tp|p=34858473|t=2021. Identification of Intercellular Signaling Changes Across Conditions and Their Influence on Intracellular Signaling Response From Multiple Single-Cell Datasets.|pdf=|usr=}}
+{{tp|p=34859078|t=2021. Platelet Phenotype Analysis of COVID-19 Patients Reveals Progressive Changes in the Activation of Integrin alphaIIbbeta3, F13A1, the SARS-CoV-2 Target EIF4A1 and Annexin A5.|pdf=|usr=}}
+{{tp|p=34859136|t=2021. A Nucleocapsid-based Transcomplementation Cell Culture System of SARS-CoV-2 to Recapitulate the Complete Viral Life Cycle.|pdf=|usr=}}
+{{tp|p=34863291|t=2021. Gut microbiota imbalance in colorectal cancer patients, the risk factor of COVID-19 mortality.|pdf=|usr=}}
+{{tp|p=34864875|t=2022. Multiomics integration-based molecular characterizations of COVID-19.|pdf=|usr=}}
+{{tp|p=34867933|t=2021. Convalescent COVID-19 Patients Without Comorbidities Display Similar Immunophenotypes Over Time Despite Divergent Disease Severities.|pdf=|usr=}}
+{{tp|p=34867988|t=2021. Severe Adaptive Immune Suppression May Be Why Patients With Severe COVID-19 Cannot Be Discharged From the ICU Even After Negative Viral Tests.|pdf=|usr=}}
+{{tp|p=34869070|t=2021. Detection of Antibodies Against the SARS-CoV-2 Spike Protein and Analysis of the Peripheral Blood Mononuclear Cell Transcriptomic Profile, 15 Years After Recovery From SARS.|pdf=|usr=}}
+{{tp|p=34870243|t=2022. Protocol for global proteome, virome, and metaproteome profiling of respiratory specimen (VTM) in COVID-19 patient by LC-MS/MS-based analysis.|pdf=|usr=}}
+{{tp|p=34873589|t=2021. People critically ill with COVID-19 exhibit peripheral immune profiles predictive of mortality and reflective of SARS-CoV-2 lung viral burden.|pdf=|usr=}}
+{{tp|p=34875673|t=2022. Signature of long-lived memory CD8(+) T cells in acute SARS-CoV-2 infection.|pdf=|usr=}}
+{{tp|p=34877479|t=2022. Roles of antiviral sensing and type I interferon signaling in the restriction of SARS-CoV-2 replication.|pdf=|usr=}}
+{{tp|p=34877545|t=2022. Global metabolome profiling of COVID-19 respiratory specimen using high-resolution mass spectrometry (HRMS).|pdf=|usr=}}
+{{tp|p=34878333|t=2021. Amino Acid Metabolism is Significantly Altered at the Time of Admission in Hospital for Severe COVID-19 Patients: Findings from Longitudinal Targeted Metabolomics Analysis.|pdf=|usr=}}
+{{tp|p=34878902|t=2022. Analysis of B Cell Receptor Repertoires Reveals Key Signatures of the Systemic B Cell Response after SARS-CoV-2 Infection.|pdf=|usr=}}
+{{tp|p=34880855|t=2021. Transcriptional Profiling and Machine Learning Unveil a Concordant Biosignature of Type I Interferon-Inducible Host Response Across Nasal Swab and Pulmonary Tissue for COVID-19 Diagnosis.|pdf=|usr=}}
+{{tp|p=34882757|t=2021. Foxp3+ CD4+ regulatory T cells control dendritic cells in inducing antigen-specific immunity to emerging SARS-CoV-2 antigens.|pdf=|usr=}}
+{{tp|p=34884813|t=2021. Pathogenesis and Treatment of Cytokine Storm Induced by Infectious Diseases.|pdf=|usr=}}
+{{tp|p=34887515|t=2021. Supermeres are functional extracellular nanoparticles replete with disease biomarkers and therapeutic targets.|pdf=|usr=}}
+{{tp|p=34889978|t=2022. Common, low-frequency, rare, and ultra-rare coding variants contribute to COVID-19 severity.|pdf=|usr=}}
+{{tp|p=34893580|t=2021. Endothelial dysfunction contributes to severe COVID-19 in combination with dysregulated lymphocyte responses and cytokine networks.|pdf=|usr=}}
+{{tp|p=34893640|t=2021. Proteomic profiling of MIS-C patients indicates heterogeneity relating to interferon gamma dysregulation and vascular endothelial dysfunction.|pdf=|usr=}}
+{{tp|p=34895312|t=2021. Risk-focused differences in molecular processes implicated in SARS-CoV-2 infection: corollaries in DNA methylation and gene expression.|pdf=|usr=}}
+{{tp|p=34898980|t=2021. Evolutionary Dynamics of Indels in SARS-CoV-2 Spike Glycoprotein.|pdf=|usr=}}
+{{tp|p=34899557|t=2021. A Combined Clinical and Serum Biomarker-Based Approach May Allow Early Differentiation Between Patients With Minor Stroke and Transient Ischemic Attack as Well as Mid-term Prognostication.|pdf=|usr=}}
+{{tp|p=34899651|t=2021. Suppression and Activation of Intracellular Immune Response in Initial Severe Acute Respiratory Syndrome Coronavirus 2 Infection.|pdf=|usr=}}
+{{tp|p=34899680|t=2021. Activation of Intracellular Complement in Lungs of Patients With Severe COVID-19 Disease Decreases T-Cell Activity in the Lungs.|pdf=|usr=}}
+{{tp|p=34899693|t=2021. Single-Cell Immunogenomic Approach Identified SARS-CoV-2 Protective Immune Signatures in Asymptomatic Direct Contacts of COVID-19 Cases.|pdf=|usr=}}
+{{tp|p=34901782|t=2022. SARS-CoV-2 nucleocapsid protein binds host mRNAs and attenuates stress granules to impair host stress response.|pdf=|usr=}}
+{{tp|p=34901888|t=2022. Detection of N6-methyladenosine in SARS-CoV-2 RNA by methylated RNA immunoprecipitation sequencing.|pdf=|usr=}}
+{{tp|p=34902130|t=2022. Scenarios for the Integration of Microarray Gene Expression Profiles in COVID-19-Related Studies.|pdf=|usr=}}
+{{tp|p=34903581|t=2021. SARS-CoV-2 expresses a microRNA-like small RNA able to selectively repress host genes.|pdf=|usr=}}
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+{{tp|p=34912867|t=2021. Novel Knowledge-Based Transcriptomic Profiling of Lipid Lysophosphatidylinositol-Induced Endothelial Cell Activation.|pdf=|usr=}}
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+{{tp|p=34914922|t=2021. SARS-CoV-2 infection triggers profibrotic macrophage responses and lung fibrosis.|pdf=|usr=}}
+{{tp|p=34914966|t=2022. Where all the Roads Meet? A Crossover Perspective on Host Factors Regulating SARS-CoV-2 infection.|pdf=|usr=}}
+{{tp|p=34915155|t=2022. SARS-CoV-2 spike S1 subunit induces neuroinflammatory, microglial and behavioral sickness responses: Evidence of PAMP-like properties.|pdf=|usr=}}
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+{{tp|p=34917069|t=2021. The Triangle Relationship Between Long Noncoding RNA, RIG-I-like Receptor Signaling Pathway, and Glycolysis.|pdf=|usr=}}
+{{tp|p=34917088|t=2021. m(6)A Regulator-Mediated Methylation Modification Patterns and Characteristics of Immunity in Blood Leukocytes of COVID-19 Patients.|pdf=|usr=}}
+{{tp|p=34917662|t=2021. Detailed Analyses of the Expression Patterns of Potential Severe Acute Respiratory Syndrome Coronavirus 2 Receptors in the Human Heart Using Single-Nucleus RNA Sequencing.|pdf=|usr=}}
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+{{tp|p=34921044|t=2021. Commentary: Morphoproteomics and Data Mining of the Medical Literature Define the Pathobiology of COVID-19 Pneumonitis in Humans and Provide Adjuvant Therapeutic Options.|pdf=|usr=}}
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+{{tp|p=34926320|t=2021. Pathogen-Host Interaction Repertoire at Proteome and Posttranslational Modification Levels During Fungal Infections.|pdf=|usr=}}
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+{{tp|p=34938772|t=2021. Metabolic and Lipidomic Markers Differentiate COVID-19 From Non-Hospitalized and Other Intensive Care Patients.|pdf=|usr=}}
+{{tp|p=34940501|t=2021. Developmental Aspects of SARS-CoV-2, Potential Role of Exosomes and Their Impact on the Human Transcriptome.|pdf=|usr=}}
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+{{tp|p=34944012|t=2021. Identifying Putative Causal Links between MicroRNAs and Severe COVID-19 Using Mendelian Randomization.|pdf=|usr=}}
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+{{tp|p=34982558|t=2022. Deep Time Course Proteomics of SARS-CoV- and SARS-CoV-2-Infected Human Lung Epithelial Cells (Calu-3) Reveals Strong Induction of Interferon-Stimulated Gene Expression by SARS-CoV-2 in Contrast to SARS-CoV.|pdf=|usr=}}
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+{{tp|p=35003084|t=2021. SARS-CoV-2-Encoded MiRNAs Inhibit Host Type I Interferon Pathway and Mediate Allelic Differential Expression of Susceptible Gene.|pdf=|usr=}}
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+{{tp|p=35005991|t=2022. Mass Spectrometry-Based Proteomics Research to Fight COVID-19: An Expert Review on Hopes and Challenges.|pdf=|usr=}}
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+{{tp|p=35011584|t=2021. Role of Human Antigen R (HuR) in the Regulation of Pulmonary ACE2 Expression.|pdf=|usr=}}
+{{tp|p=35011641|t=2021. The Genomic Physics of COVID-19 Pathogenesis and Spread.|pdf=|usr=}}
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+{{tp|p=35022217|t=2022. SNX27 suppresses SARS-CoV-2 infection by inhibiting viral lysosome/late endosome entry.|pdf=|usr=}}
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+{{tp|p=35045126|t=2022. Identification of hub genes associated with COVID-19 and idiopathic pulmonary fibrosis by integrated bioinformatics analysis.|pdf=|usr=}}
+{{tp|p=35045565|t=2022. The cGAS-STING pathway drives type I IFN immunopathology in COVID-19.|pdf=|usr=}}
+{{tp|p=35047828|t=2020. Mini review: Recent progress in RT-LAMP enabled COVID-19 detection.|pdf=|usr=}}
+{{tp|p=35052382|t=2021. Detection of A-to-I RNA Editing in SARS-COV-2.|pdf=|usr=}}
+{{tp|p=35052628|t=2022. Potential Therapeutic Use of the Rosemary Diterpene Carnosic Acid for Alzheimer's Disease, Parkinson's Disease, and Long-COVID through NRF2 Activation to Counteract the NLRP3 Inflammasome.|pdf=|usr=}}
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+{{tp|p=35056076|t=2021. Clinical Management of COVID-19 in Cancer Patients with the STAT3 Inhibitor Silibinin.|pdf=|usr=}}
+{{tp|p=35059135|t=2021. Syncytin, envelope protein of human endogenous retrovirus (HERV): no longer 'fossil' in human genome.|pdf=|usr=}}
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+{{tp|p=35063125|t=2022. The blood-brain barrier is dysregulated in COVID-19 and serves as a CNS entry route for SARS-CoV-2.|pdf=|usr=}}
+{{tp|p=35064006|t=2022. Plasma cell-free RNA characteristics in COVID-19 patients.|pdf=|usr=}}
+{{tp|p=35064122|t=2022. Single-cell multi-omics reveals dyssynchrony of the innate and adaptive immune system in progressive COVID-19.|pdf=|usr=}}
+{{tp|p=35067165|t=2022. SARS-CoV-2 targets the lysosome to mediate airway inflammatory cell death.|pdf=|usr=}}
+{{tp|p=35069552|t=2021. Cardiovascular Risk After SARS-CoV-2 Infection Is Mediated by IL18/IL18R1/HIF-1 Signaling Pathway Axis.|pdf=|usr=}}
+{{tp|p=35072167|t=2021. Host methylation predicts SARS-CoV-2 infection and clinical outcome.|pdf=|usr=}}
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+{{tp|p=35079083|t=2022. Dual RNA-Seq analysis of SARS-CoV-2 correlates specific human transcriptional response pathways directly to viral expression.|pdf=|usr=}}
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+{{tp|p=35081105|t=2022. RNA Sequencing in COVID-19 patients identifies neutrophil activation biomarkers as a promising diagnostic platform for infections.|pdf=|usr=}}
+{{tp|p=35082790|t=2021. The Potential Mechanism of Cancer Patients Appearing More Vulnerable to SARS-CoV-2 and Poor Outcomes: A Pan-Cancer Bioinformatics Analysis.|pdf=|usr=}}
+{{tp|p=35083167|t=2021. SARS-CoV-2 Spike Antagonizes Innate Antiviral Immunity by Targeting Interferon Regulatory Factor 3.|pdf=|usr=}}
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+{{tp|p=35091986|t=2022. The Trend of CRISPR-Based Technologies in COVID-19 Disease: Beyond Genome Editing.|pdf=|usr=}}
+{{tp|p=35093087|t=2022. Dynamic regulation and functions of mRNA m6A modification.|pdf=|usr=}}
+{{tp|p=35095375|t=2021. NF-KB A KEY TRANSCRIPTION FACTOR IN DISEASE PROGRESSION OF PATIENTS WITH COVID-19.|pdf=|usr=}}
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+{{tp|p=35095875|t=2021. Monolaurin Confers a Protective Effect Against Porcine Epidemic Diarrhea Virus Infection in Piglets by Regulating the Interferon Pathway.|pdf=|usr=}}
+{{tp|p=35095877|t=2021. Cytokine Elevation in Severe COVID-19 From Longitudinal Proteomics Analysis: Comparison With Sepsis.|pdf=|usr=}}
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+{{tp|p=35100036|t=2022. Specific Regulatory Motifs Network in SARS-CoV-2-Infected Caco-2 Cell Line, as a Model of Gastrointestinal Infections.|pdf=|usr=}}
+{{tp|p=35100869|t=2022. Gasdermin D Inhibits Coronavirus Infection by Promoting the Noncanonical Secretion of Beta Interferon.|pdf=|usr=}}
+{{tp|p=35102215|t=2022. Metabolomics study of COVID-19 patients in four different clinical stages.|pdf=|usr=}}
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+{{tp|p=35107034|t=2022. Woodsmoke particle exposure prior to SARS-CoV-2 infection alters antiviral response gene expression in human nasal epithelial cells in a sex-dependent manner.|pdf=|usr=}}
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+{{tp|p=35110370|t=2022. Proteomic landscape of SARS-CoV-2- and MERS-CoV-infected primary human renal epithelial cells.|pdf=|usr=}}
+{{tp|p=35111156|t=2021. Exosomes Recovered From the Plasma of COVID-19 Patients Expose SARS-CoV-2 Spike-Derived Fragments and Contribute to the Adaptive Immune Response.|pdf=|usr=}}
+{{tp|p=35113990|t=2022. Silent Hypoxia in COVID-19 Pneumonia: State of Knowledge, Pathophysiology, Mechanisms, and Management.|pdf=|usr=}}
+{{tp|p=35114443|t=2022. Systems pharmacology-based drug discovery and active mechanism of natural products for coronavirus pneumonia (COVID-19): An example using flavonoids.|pdf=|usr=}}
+{{tp|p=35115549|t=2022. Myeloid cell interferon responses correlate with clearance of SARS-CoV-2.|pdf=|usr=}}
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+{{tp|p=35118477|t=2022. T cell response to intact SARS-CoV-2 includes coronavirus cross-reactive and variant-specific components.|pdf=|usr=}}
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+{{tp|p=35124429|t=2022. SARS-CoV-2 RNA elements share human sequence identity and upregulate hyaluronan via NamiRNA-enhancer network.|pdf=|usr=}}
+{{tp|p=35126380|t=2021. Swine Enteric Coronaviruses (PEDV, TGEV, and PDCoV) Induce Divergent Interferon-Stimulated Gene Responses and Antigen Presentation in Porcine Intestinal Enteroids.|pdf=|usr=}}
+{{tp|p=35126398|t=2022. Alu RNA Structural Features Modulate Immune Cell Activation and A-to-I Editing of Alu RNAs Is Diminished in Human Inflammatory Bowel Disease.|pdf=|usr=}}
+{{tp|p=35127841|t=2021. Molecular Mechanisms of Cardiac Injury Associated With Myocardial SARS-CoV-2 Infection.|pdf=|usr=}}
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+{{tp|p=35128501|t=2022. Antiviral metabolite 3'-deoxy-3',4'-didehydro-cytidine is detectable in serum and identifies acute viral infections including COVID-19.|pdf=|usr=}}
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+{{tp|p=35131898|t=2022. Differential interferon-alpha subtype induced immune signatures are associated with suppression of SARS-CoV-2 infection.|pdf=|usr=}}
+{{tp|p=35132419|t=2022. Human Cardiac Organoids to Model COVID-19 Cytokine Storm Induced Cardiac Injuries.|pdf=|usr=}}
+{{tp|p=35132424|t=2022. Blood transcriptomes of SARS-CoV-2 infected kidney transplant recipients demonstrate immune insufficiency.|pdf=|usr=}}
+{{tp|p=35133633|t=2022. Clinical and Laboratory Approach to Diagnose COVID-19 Using Machine Learning.|pdf=|usr=}}
+{{tp|p=35133846|t=2022. Metabolic Snapshot of Plasma Samples Reveals New Pathways Implicated in SARS-CoV-2 Pathogenesis.|pdf=|usr=}}
+{{tp|p=35133977|t=2022. Single-cell RNA sequencing reveals induction of distinct trained-immunity programs in human monocytes.|pdf=|usr=}}
+{{tp|p=35133988|t=2022. T cell response to intact SARS-CoV-2 includes coronavirus cross-reactive and variant-specific components.|pdf=|usr=}}
+{{tp|p=35136165|t=2022. An extended motif in the SARS-CoV-2 spike modulates binding and release of host coatomer in retrograde trafficking.|pdf=|usr=}}
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+{{tp|p=35141213|t=2021. A Novel Prognostic Signature for Survival Prediction and Immune Implication Based on SARS-CoV-2-Related Genes in Kidney Renal Clear Cell Carcinoma.|pdf=|usr=}}
+{{tp|p=35141230|t=2021. Cancer and COVID-19 Susceptibility and Severity: A Two-Sample Mendelian Randomization and Bioinformatic Analysis.|pdf=|usr=}}
+{{tp|p=35141569|t=2022. Transcriptome profiling of PBMCs and formalin-fixed autopsy tissues from COVID-19 patients.|pdf=|usr=}}
+{{tp|p=35143212|t=2022. Longitudinal Plasma Proteomics Analysis Reveals Novel Candidate Biomarkers in Acute COVID-19.|pdf=|usr=}}
+{{tp|p=35143839|t=2022. The spike protein of SARS-CoV-2 induces endothelial inflammation through integrin alpha5beta1 and NF-kappaB signaling.|pdf=|usr=}}
+{{tp|p=35145507|t=2021. Identification of Robust Protein Associations With COVID-19 Disease Based on Five Clinical Studies.|pdf=|usr=}}
+{{tp|p=35148199|t=2022. SLAMF7 engagement superactivates macrophages in acute and chronic inflammation.|pdf=|usr=}}
+{{tp|p=35148261|t=2022. Mixed-weight Neural Bagging for Detecting m6A Modifications in SARS-CoV-2 RNA Sequencing.|pdf=|usr=}}
+{{tp|p=35151371|t=2022. Immuno-proteomic profiling reveals aberrant immune cell regulation in the airways of individuals with ongoing post-COVID-19 respiratory disease.|pdf=|usr=}}
+{{tp|p=35153822|t=2021. The Landscape of Aminoacyl-tRNA Synthetases Involved in Severe Acute Respiratory Syndrome Coronavirus 2 Infection.|pdf=|usr=}}
+{{tp|p=35154070|t=2021. T-Cell Repertoire Characteristics of Asymptomatic and Re-Detectable Positive COVID-19 Patients.|pdf=|usr=}}
+{{tp|p=35154090|t=2022. SARS-CoV-2 Infection Triggers Auto-Immune Response in ARDS.|pdf=|usr=}}
+{{tp|p=35157021|t=2022. Multi-Level Attention Graph Neural Network Based on Co-expression Gene Modules for Disease Diagnosis and Prognosis.|pdf=|usr=}}
+{{tp|p=35159296|t=2022. Competitive Endogenous RNA Network Activates Host Immune Response in SARS-CoV-2-, panH1N1 (A/California/07/2009)-, and H7N9 (A/Shanghai/1/2013)-Infected Cells.|pdf=|usr=}}
+{{tp|p=35163833|t=2022. AKR1B10, One of the Triggers of Cytokine Storm in SARS-CoV2 Severe Acute Respiratory Syndrome.|pdf=|usr=}}
+{{tp|p=35164139|t=2022. A New Butyrate Releaser Exerts a Protective Action against SARS-CoV-2 Infection in Human Intestine.|pdf=|usr=}}
+{{tp|p=35164548|t=2022. Genome-Wide Characterization of SARS-CoV-2 Cytopathogenic Proteins in the Search of Antiviral Targets.|pdf=|usr=}}
+{{tp|p=35169146|t=2022. Cell specific peripheral immune responses predict survival in critical COVID-19 patients.|pdf=|usr=}}
+{{tp|p=35169794|t=2022. Comparative analysis of cell-cell communication at single-cell resolution.|pdf=|usr=}}
+{{tp|p=35171039|t=2022. Endothelial inflammation and dysfunction in COVID-19.|pdf=|usr=}}
+{{tp|p=35172892|t=2022. Integrating single-cell sequencing data with GWAS summary statistics reveals CD16+monocytes and memory CD8+T cells involved in severe COVID-19.|pdf=|usr=}}
+{{tp|p=35173714|t=2022. All-Trans Retinoic Acid Attenuates Transmissible Gastroenteritis Virus-Induced Inflammation in IPEC-J2 Cells via Suppressing the RLRs/NF-kappaB Signaling Pathway.|pdf=|usr=}}
+{{tp|p=35173764|t=2021. KeyPathwayMineR: De Novo Pathway Enrichment in the R Ecosystem.|pdf=|usr=}}
+{{tp|p=35177862|t=2022. Immunopathological signatures in multisystem inflammatory syndrome in children and pediatric COVID-19.|pdf=|usr=}}
+{{tp|p=35178029|t=2021. Luteolin Potentially Treating Prostate Cancer and COVID-19 Analyzed by the Bioinformatics Approach: Clinical Findings and Drug Targets.|pdf=|usr=}}
+{{tp|p=35179038|t=2022. Phenome-Wide Association Study of Severe COVID-19 Genetic Risk Variants.|pdf=|usr=}}
+{{tp|p=35180397|t=2022. A human pluripotent stem cell-based model of SARS-CoV-2 infection reveals an ACE2-independent inflammatory activation of vascular endothelial cells through TLR4.|pdf=|usr=}}
+{{tp|p=35180460|t=2022. Upregulation of cytokine signalling in platelets increases risk of thrombophilia in severe COVID-19 patients.|pdf=|usr=}}
+{{tp|p=35181735|t=2022. Immune transcriptome analysis of COVID-19 patients infected with SARS-CoV-2 variants carrying the E484K escape mutation identifies a distinct gene module.|pdf=|usr=}}
+{{tp|p=35185603|t=2021. COVID-19 and Mitochondrial Non-Coding RNAs: New Insights From Published Data.|pdf=|usr=}}
+{{tp|p=35185890|t=2022. Immune Response Is Key to Genetic Mechanisms of SARS-CoV-2 Infection With Psychiatric Disorders Based on Differential Gene Expression Pattern Analysis.|pdf=|usr=}}
+{{tp|p=35186014|t=2021. Single-Cell Differential Network Analysis with Sparse Bayesian Factor Models.|pdf=|usr=}}
+{{tp|p=35186784|t=2021. Transcriptome Analysis of Peripheral Blood Mononuclear Cells in SARS-CoV-2 Naive and Recovered Individuals Vaccinated With Inactivated Vaccine.|pdf=|usr=}}
+{{tp|p=35186917|t=2022. Profiling Selective Packaging of Host RNA and Viral RNA Modification in SARS-CoV-2 Viral Preparations.|pdf=|usr=}}
+{{tp|p=35189575|t=2022. The impact of hypoxia on B cells in COVID-19.|pdf=|usr=}}
+{{tp|p=35192147|t=2022. PathogenTrack and Yeskit: tools for identifying intracellular pathogens from single-cell RNA-sequencing datasets as illustrated by application to COVID-19.|pdf=|usr=}}
+{{tp|p=35194198|t=2022. Next generation self-replicating RNA vectors for vaccines and immunotherapies.|pdf=|usr=}}
+{{tp|p=35194601|t=2022. The mechanism of RNA capping by SARS-CoV-2.|pdf=|usr=}}
+{{tp|p=35194610|t=2022. SARS-CoV-2 Nsp14 mediates the effects of viral infection on the host cell transcriptome.|pdf=|usr=}}
+{{tp|p=35196007|t=2022. Intrinsically Disordered Proteins: Perspective on COVID-19 Infection and Drug Discovery.|pdf=|usr=}}
+{{tp|p=35202626|t=2022. A multi-tissue study of immune gene expression profiling highlights the key role of the nasal epithelium in COVID-19 severity.|pdf=|usr=}}
+{{tp|p=35203278|t=2022. The ACE2 Receptor for Coronavirus Entry Is Localized at Apical Cell-Cell Junctions of Epithelial Cells.|pdf=|usr=}}
+{{tp|p=35204689|t=2022. Looking at COVID-19 from a Systems Biology Perspective.|pdf=|usr=}}
+{{tp|p=35205046|t=2022. Viral and Host Genetic and Epigenetic Biomarkers Related to SARS-CoV-2 Cell Entry, Infection Rate, and Disease Severity.|pdf=|usr=}}
+{{tp|p=35205390|t=2022. Conserved MicroRNAs in Human Nasopharynx Tissue Samples from Swabs Are Differentially Expressed in Response to SARS-CoV-2.|pdf=|usr=}}
+{{tp|p=35205926|t=2022. Molecular Profiling Reveals Characteristic and Decisive Signatures in Patients after Allogeneic Stem Cell Transplantation Suffering from Invasive Pulmonary Aspergillosis.|pdf=|usr=}}
+{{tp|p=35208734|t=2022. Prion-like Domains in Spike Protein of SARS-CoV-2 Differ across Its Variants and Enable Changes in Affinity to ACE2.|pdf=|usr=}}
+{{tp|p=35211117|t=2022. Are There Hidden Genes in DNA/RNA Vaccines?|pdf=|usr=}}
+{{tp|p=35212764|t=2022. Proteomic Profiling Identifies Novel Proteins for Genetic Risk of Severe COVID-19: the Atherosclerosis Risk in Communities Study.|pdf=|usr=}}
+{{tp|p=35215915|t=2022. Secondary Structure of Subgenomic RNA M of SARS-CoV-2.|pdf=|usr=}}
+{{tp|p=35215921|t=2022. Carbohydrate Ligands for COVID-19 Spike Proteins.|pdf=|usr=}}
+{{tp|p=35215969|t=2022. Unlike Chloroquine, Mefloquine Inhibits SARS-CoV-2 Infection in Physiologically Relevant Cells.|pdf=|usr=}}
+{{tp|p=35216673|t=2022. A blood atlas of COVID-19 defines hallmarks of disease severity and specificity.|pdf=|usr=}}
+{{tp|p=35217532|t=2022. Specialized interferon action in COVID-19.|pdf=|usr=}}
+{{tp|p=35221000|t=2021. Viral Genome Integration into the Host Cell Genome: A Double Edged-Sword.|pdf=|usr=}}
+{{tp|p=35222346|t=2022. The Hidden Enemy Within: Non-canonical Peptides in Virus-Induced Autoimmunity.|pdf=|usr=}}
+{{tp|p=35223838|t=2022. Protein Posttranslational Signatures Identified in COVID-19 Patient Plasma.|pdf=|usr=}}
+{{tp|p=35224468|t=2022. Multi-omics evaluation of SARS-CoV-2 infected mouse lungs reveals dynamics of host responses.|pdf=|usr=}}
+{{tp|p=35226074|t=2022. CRESSP: a comprehensive pipeline for prediction of immunopathogenic SARS-CoV-2 epitopes using structural properties of proteins.|pdf=|usr=}}
+{{tp|p=35226991|t=2022. Thymosin-alpha1 binds with ACE and downregulates the expression of ACE2 in human respiratory epithelia.|pdf=|usr=}}
+{{tp|p=35229015|t=2022. Blood metabolites predicting mild cognitive impairment in the study of Latinos-investigation of neurocognitive aging (HCHS/SOL).|pdf=|usr=}}
+{{tp|p=35229157|t=2022. Unheeded SARS-CoV-2 proteins? A deep look into negative-sense RNA.|pdf=|usr=}}
+{{tp|p=35232816|t=2022. The key features of SARS-CoV-2 leader and NSP1 required for viral escape of NSP1-mediated repression.|pdf=|usr=}}
+{{tp|p=35233542|t=2022. Mass spectrometry and proteome analysis to identify SARS-CoV-2 protein from COVID-19 patient swab samples.|pdf=|usr=}}
+{{tp|p=35233546|t=2022. System-wide transcriptome damage and tissue identity loss in COVID-19 patients.|pdf=|usr=}}
+{{tp|p=35233559|t=2021. Defense of COVID-19 by Human Organoids.|pdf=|usr=}}
+{{tp|p=35233572|t=2022. Targeted Down Regulation Of Core Mitochondrial Genes During SARS-CoV-2 Infection.|pdf=|usr=}}
+{{tp|p=35233578|t=2022. Discovery and functional interrogation of SARS-CoV-2 protein-RNA interactions.|pdf=|usr=}}
+{{tp|p=35234938|t=2022. Virus-specific editing identification approach reveals the landscape of A-to-I editing and its impacts on SARS-CoV-2 characteristics and evolution.|pdf=|usr=}}
+{{tp|p=35235083|t=2022. Identification of the Hub Genes and the Signaling Pathways in Human iPSC-Cardiomyocytes Infected by SARS-CoV-2.|pdf=|usr=}}
+{{tp|p=35237749|t=2022. A master autoantigen-ome links alternative splicing, female predilection, and COVID-19 to autoimmune diseases.|pdf=|usr=}}
+{{tp|p=35239653|t=2022. Proteome-wide Mendelian randomization identifies causal links between blood proteins and severe COVID-19.|pdf=|usr=}}
+{{tp|p=35242109|t=2022. Identification of Crucial Genes and Key Functions in Type 2 Diabetic Hearts by Bioinformatic Analysis.|pdf=|usr=}}
+{{tp|p=35244721|t=2022. Nanopore ReCappable sequencing maps SARS-CoV-2 5' capping sites and provides new insights into the structure of sgRNAs.|pdf=|usr=}}
+{{tp|p=35248659|t=2022. Role of genomics in combating COVID-19 pandemic.|pdf=|usr=}}
+{{tp|p=35251015|t=2022. SARS-CoV-2 Infection Triggers Phosphorylation: Potential Target for Anti-COVID-19 Therapeutics.|pdf=|usr=}}
+{{tp|p=35251616|t=2022. A novel concept of human antiviral protection: It's all about RNA (Review).|pdf=|usr=}}
+{{tp|p=35252121|t=2022. Editorial: Protein Glycosylation-Advances in Identification, Characterization and Biological Function Elucidation Using Mass Spectrometry.|pdf=|usr=}}
+{{tp|p=35255492|t=2022. Whole-genome sequencing reveals host factors underlying critical COVID-19.|pdf=|usr=}}
+{{tp|p=35258762|t=2022. Integrated analysis of gut microbiome and host immune responses in COVID-19.|pdf=|usr=}}
+{{tp|p=35261621|t=2022. Post-treatment with propofol inhibits inflammatory response in LPS-induced alveolar type II epithelial cells.|pdf=|usr=}}
+{{tp|p=35265835|t=2022. Feature selection for kernel methods in systems biology.|pdf=|usr=}}
+{{tp|p=35269470|t=2022. Severe COVID-19 Shares a Common Neutrophil Activation Signature with Other Acute Inflammatory States.|pdf=|usr=}}
+{{tp|p=35272104|t=2022. Stratification of COVID-19 patients based on quantitative immune-related gene expression in whole blood.|pdf=|usr=}}
+{{tp|p=35277538|t=2022. Computational identification of host genomic biomarkers highlighting their functions, pathways and regulators that influence SARS-CoV-2 infections and drug repurposing.|pdf=|usr=}}
+{{tp|p=35281785|t=2022. SARS-CoV-2 triggered oxidative stress and abnormal energy metabolism in gut microbiota.|pdf=|usr=}}
+{{tp|p=35282650|t=2022. The Key Genes Underlying Pathophysiology Correlation Between the Acute Myocardial Infarction and COVID-19.|pdf=|usr=}}
+{{tp|p=35284643|t=2022. An experimental in silico study on COVID-19: Response of neutrophil-related genes to antibiotics.|pdf=|usr=}}
+{{tp|p=35284913|t=2022. Th1, Th2 and Th17 inflammatory pathways synergistically predict cardiometabolic protein expression in serum of COVID-19 patients.|pdf=|usr=}}
+{{tp|p=35288537|t=2022. Plasma proteomic and metabolomic characterization of COVID-19 survivors 6 months after discharge.|pdf=|usr=}}
+{{tp|p=35288942|t=2022. When cyclin-dependent kinases meet viral infections, including SARS-CoV-2.|pdf=|usr=}}
+{{tp|p=35290573|t=2022. A urinary proteomic landscape of COVID-19 progression identifies signaling pathways and therapeutic options.|pdf=|usr=}}
+{{tp|p=35293857|t=2022. SARS-CoV-2 Nsp14 mediates the effects of viral infection on the host cell transcriptome.|pdf=|usr=}}
+{{tp|p=35294846|t=2022. Detection techniques for epitranscriptomic marks.|pdf=|usr=}}
+{{tp|p=35296346|t=2022. Autoimmunity is a hallmark of post-COVID syndrome.|pdf=|usr=}}
+{{tp|p=35301508|t=2022. Type I interferon transcriptional network regulates expression of coinhibitory receptors in human T cells.|pdf=|usr=}}
+{{tp|p=35301621|t=2022. Comparative trachea transcriptome analysis in SPF broiler chickens infected with avian infectious bronchitis and avian influenza viruses.|pdf=|usr=}}
+{{tp|p=35301654|t=2022. Differentially expressed plasmatic microRNAs in Brazilian patients with Coronavirus disease 2019 (COVID-19): preliminary results.|pdf=|usr=}}
+{{tp|p=35303126|t=2022. Identification of G-quadruplex DNA sequences in SARS-CoV2.|pdf=|usr=}}
+{{tp|p=35305698|t=2022. The molecular mechanism of SARS-CoV-2 evading host antiviral innate immunity.|pdf=|usr=}}
+{{tp|p=35309096|t=2021. Multi-Omics-Guided Discovery of Omicsynins Produced by Streptomyces sp. 1647: Pseudo-Tetrapeptides Active Against Influenza A Viruses and Coronavirus HCoV-229E.|pdf=|usr=}}
+{{tp|p=35309299|t=2022. Signaling Through FcgammaRIIA and the C5a-C5aR Pathway Mediate Platelet Hyperactivation in COVID-19.|pdf=|usr=}}
+{{tp|p=35309488|t=2022. Semen Proteomics of COVID-19 Convalescent Men Reveals Disruption of Key Biological Pathways Relevant to Male Reproductive Function.|pdf=|usr=}}
+{{tp|p=35310032|t=2022. Integrating Metabolomics and Network Pharmacology to Explore the Protective Effect of Ginsenoside Re against Radiotherapy Injury in Mice.|pdf=|usr=}}
+{{tp|p=35310073|t=2022. SARS-CoV-2 proteome microarray for COVID-19 patient sera profiling.|pdf=|usr=}}
+{{tp|p=35311586|t=2022. Profiling of SARS-CoV-2 Subgenomic RNAs in Clinical Specimens.|pdf=|usr=}}
+{{tp|p=35311624|t=2022. DNA methylation profiles in pneumonia patients reflect changes in cell types and pneumonia severity.|pdf=|usr=}}
+{{tp|p=35313583|t=2022. Dynamic single-cell RNA sequencing reveals BCG vaccination curtails SARS-CoV-2 induced disease severity and lung inflammation.|pdf=|usr=}}
+{{tp|p=35313584|t=2022. Genetic control of the dynamic transcriptional response to immune stimuli and glucocorticoids at single cell resolution.|pdf=|usr=}}
+{{tp|p=35313658|t=2022. The accessible promoter-mediated supplementary effect of host factors provides new insight into the tropism of SARS-CoV-2.|pdf=|usr=}}
+{{tp|p=35314694|t=2022. Genetic alteration of human MYH6 is mimicked by SARS-CoV-2 polyprotein: mapping viral variants of cardiac interest.|pdf=|usr=}}
+{{tp|p=35317263|t=2022. Using bioinformatics and systems biology to discover common pathogenetic processes between sarcoidosis and COVID-19.|pdf=|usr=}}
+{{tp|p=35318325|t=2022. Integrative transcriptomic, evolutionary, and causal inference framework for region-level analysis: Application to COVID-19.|pdf=|usr=}}
+{{tp|p=35318674|t=2022. SARS-CoV-2, SARS-CoV, and MERS-CoV encode circular RNAs of spliceosome-independent origin.|pdf=|usr=}}
+{{tp|p=35319744|t=2022. Late Complications of COVID-19: A Morphologic, Imaging, and Droplet Digital Polymerase Chain Reaction Study of Lung Tissue.|pdf=|usr=}}
+{{tp|p=35320721|t=2022. Restriction factor screening identifies RABGAP1L-mediated disruption of endocytosis as a host antiviral defense.|pdf=|usr=}}
+{{tp|p=35320939|t=2022. Aorta in Pathologies May Function as an Immune Organ by Upregulating Secretomes for Immune and Vascular Cell Activation, Differentiation and Trans-Differentiation-Early Secretomes may Serve as Drivers for Trained Immunity.|pdf=|usr=}}
+{{tp|p=35322240|t=2022. Allelic imbalance of HLA-B expression in human lung cells infected with coronavirus and other respiratory viruses.|pdf=|usr=}}
+{{tp|p=35326463|t=2022. Multi-Design Differential Expression Profiling of COVID-19 Lung Autopsy Specimens Reveals Significantly Deregulated Inflammatory Pathways and SFTPC Impaired Transcription.|pdf=|usr=}}
+{{tp|p=35328087|t=2022. Identification of Genetic Risk Factors of Severe COVID-19 Using Extensive Phenotypic Data: A Proof-of-Concept Study in a Cohort of Russian Patients.|pdf=|usr=}}
+{{tp|p=35328409|t=2022. SARS-CoV-2 Membrane Protein: From Genomic Data to Structural New Insights.|pdf=|usr=}}
+{{tp|p=35331159|t=2022. Regulation of SARS CoV-2 host factors in the kidney and heart in rats with 5/6 nephrectomy-effects of salt, ARB, DPP4 inhibitor and SGLT2 blocker.|pdf=|usr=}}
+{{tp|p=35332098|t=2022. Global mapping of RNA homodimers in living cells.|pdf=|usr=}}
+{{tp|p=35336922|t=2022. Multiorgan and Vascular Tropism of SARS-CoV-2.|pdf=|usr=}}
+{{tp|p=35336960|t=2022. Differential Peripheral Blood Glycoprotein Profiles in Symptomatic and Asymptomatic COVID-19.|pdf=|usr=}}
+{{tp|p=35337019|t=2022. A BioID-Derived Proximity Interactome for SARS-CoV-2 Proteins.|pdf=|usr=}}
+{{tp|p=35339845|t=2022. Integration of omics data to generate and analyse COVID-19 specific genome-scale metabolic models.|pdf=|usr=}}
+{{tp|p=35340030|t=2022. Mast cells in lung damage of COVID-19 autopsies: A descriptive study.|pdf=|usr=}}
+{{tp|p=35342878|t=2022. Identified human breast milk compositions effectively inhibit SARS-CoV-2 and variants infection and replication.|pdf=|usr=}}
+{{tp|p=35343064|t=2022. RNA-protein interactomes as invaluable resources to study RNA viruses: Insights from SARS CoV-2 studies.|pdf=|usr=}}
+{{tp|p=35343384|t=2022. Transcriptomic analysis of the innate immune signatures of a SARS-CoV-2 protein subunit vaccine ZF2001 and an mRNA vaccine RRV.|pdf=|usr=}}
+{{tp|p=35350199|t=2022. Autoantibody discovery across monogenic, acquired, and COVID19-associated autoimmunity with scalable PhIP-Seq.|pdf=|usr=}}
+{{tp|p=35350779|t=2022. Metabolic Landscape of Bronchoalveolar Lavage Fluid in Coronavirus Disease 2019 at Single Cell Resolution.|pdf=|usr=}}
+{{tp|p=35351411|t=2022. Differences and similarities in endothelial and angiogenic profiles of preeclampsia and COVID-19 in pregnancy.|pdf=|usr=}}
+{{tp|p=35354968|t=2022. SARS-CoV-2 pathogenesis.|pdf=|usr=}}
+{{tp|p=35363626|t=2022. Patterns of Inflammatory Cell Infiltration and Expression of STAT6 in the Lungs of Patients With COVID-19: An Autopsy Study.|pdf=|usr=}}
+{{tp|p=35364615|t=2022. Autoantibodies in COVID-19 correlate with antiviral humoral responses and distinct immune signatures.|pdf=|usr=}}
+{{tp|p=35369457|t=2022. Inflammatory Profiles of Tracheal Biopsies From SARS-CoV-2 Patients.|pdf=|usr=}}
+{{tp|p=35371005|t=2022. Comparison of Lung-Homing Receptor Expression and Activation Profiles on NK Cell and T Cell Subsets in COVID-19 and Influenza.|pdf=|usr=}}
+{{tp|p=35372520|t=2022. Host Cell Glycocalyx Remodeling Reveals SARS-CoV-2 Spike Protein Glycomic Binding Sites.|pdf=|usr=}}
+{{tp|p=35373054|t=2021. COVID-19-associated Nephropathy Includes Tubular Necrosis and Capillary Congestion, with Evidence of SARS-CoV-2 in the Nephron.|pdf=|usr=}}
+{{tp|p=35373282|t=2022. Vive la Resistance: T-cell Immunity in the Protection against SARS-CoV-2 Infection.|pdf=|usr=}}
+{{tp|p=35379171|t=2022. Predicted coronavirus Nsp5 protease cleavage sites in the human proteome.|pdf=|usr=}}
+{{tp|p=35379747|t=2022. Characterization of Altered Gene Expression and Histone Methylation in Peripheral Blood Mononuclear Cells Regulating Inflammation in COVID-19 Patients.|pdf=|usr=}}
+{{tp|p=35380990|t=2022. Functional reprogramming of monocytes in patients with acute and convalescent severe COVID-19.|pdf=|usr=}}
+{{tp|p=35381016|t=2022. Detection of SARS-CoV-2 infection by microRNA profiling of the upper respiratory tract.|pdf=|usr=}}
+{{tp|p=35386719|t=2022. Causal Association and Shared Genetics Between Asthma and COVID-19.|pdf=|usr=}}
+{{tp|p=35391730|t=2022. Inflammatory Bowel Disease and COVID-19: How Microbiomics and Metabolomics Depict Two Sides of the Same Coin.|pdf=|usr=}}
+{{tp|p=35392323|t=2022. SARS-CoV-2 Interaction with Human DNA Methyl Transferase 1: A Potential Risk for Increasing the Incidence of Later Chronic Diseases in the Survived Patients.|pdf=|usr=}}
+{{tp|p=35393464|t=2022. Host-pathogen dynamics in longitudinal clinical specimens from patients with COVID-19.|pdf=|usr=}}
+{{tp|p=35394619|t=2022. Single-Cell Transcriptome Analysis Reveals the Role of Pancreatic Secretome in COVID-19 Associated Multi-organ Dysfunctions.|pdf=|usr=}}
+{{tp|p=35395058|t=2022. Ad26.COV2.S prevents upregulation of SARS-CoV-2 induced pathways of inflammation and thrombosis in hamsters and rhesus macaques.|pdf=|usr=}}
+{{tp|p=35397534|t=2022. The serum of COVID-19 asymptomatic patients up-regulates proteins related to endothelial dysfunction and viral response in circulating angiogenic cells ex-vivo.|pdf=|usr=}}
+{{tp|p=35399374|t=2022. Unique peptide signatures of SARS-ComicronV-2 virus against human proteome reveal variants' immune escape and infectiveness.|pdf=|usr=}}
+{{tp|p=35401515|t=2022. Differential Transcriptomics Analysis of IPEC-J2 Cells Single or Coinfected With Porcine Epidemic Diarrhea Virus and Transmissible Gastroenteritis Virus.|pdf=|usr=}}
+{{tp|p=35401544|t=2022. Preclinical Studies on Convalescent Human Immune Plasma-Derived Exosome: Omics and Antiviral Properties to SARS-CoV-2.|pdf=|usr=}}
+{{tp|p=35401574|t=2022. An Autoantigen Atlas From Human Lung HFL1 Cells Offers Clues to Neurological and Diverse Autoimmune Manifestations of COVID-19.|pdf=|usr=}}
+{{tp|p=35402570|t=2022. In silico Drug Screening Approach Using L1000-Based Connectivity Map and Its Application to COVID-19.|pdf=|usr=}}
+{{tp|p=35405523|t=2022. Cardiovascular signatures of COVID-19 predict mortality and identify barrier stabilizing therapies.|pdf=|usr=}}
+{{tp|p=35406806|t=2022. Plasma Metabolomic Alterations Induced by COVID-19 Vaccination Reveal Putative Biomarkers Reflecting the Immune Response.|pdf=|usr=}}
+{{tp|p=35410379|t=2022. Expanded COVID-19 phenotype definitions reveal distinct patterns of genetic association and protective effects.|pdf=|usr=}}
+{{tp|p=35410380|t=2022. Understanding COVID-19 through genome-wide association studies.|pdf=|usr=}}
+{{tp|p=35412852|t=2022. SARS-CoV-2 spike protein-induced cell fusion activates the cGAS-STING pathway and the interferon response.|pdf=|usr=}}
+{{tp|p=35416291|t=2022. Natural killer cell-mediated ADCC in SARS-CoV-2-infected individuals and vaccine recipients.|pdf=|usr=}}
+{{tp|p=35416308|t=2022. A pyrosequencing protocol for rapid identification of SARS-CoV-2 variants.|pdf=|usr=}}
+{{tp|p=35419822|t=2022. Anti-IFN-alpha/-omega neutralizing antibodies from COVID-19 patients correlate with downregulation of IFN response and laboratory biomarkers of disease severity.|pdf=|usr=}}
+{{tp|p=35421082|t=2022. Abnormal global alternative RNA splicing in COVID-19 patients.|pdf=|usr=}}
+{{tp|p=35421120|t=2022. Dysregulation of the leukocyte signaling landscape during acute COVID-19.|pdf=|usr=}}
+{{tp|p=35421970|t=2022. Co-expression analysis to identify key modules and hub genes associated with COVID-19 in platelets.|pdf=|usr=}}
+{{tp|p=35422810|t=2022. Alterations of Urinary Microbial Metabolites and Immune Indexes Linked With COVID-19 Infection and Prognosis.|pdf=|usr=}}
+{{tp|p=35422859|t=2022. Combination of Enrichment Using Gene Ontology and Transcriptomic Analysis Revealed Contribution of Interferon Signaling to Severity of COVID-19.|pdf=|usr=}}
+{{tp|p=35427985|t=2022. Subtractive proteomics assisted therapeutic targets mining and designing ensemble vaccine against Candida auris for immune response induction.|pdf=|usr=}}
+{{tp|p=35429230|t=2022. Viral and cellular translation during SARS-CoV-2 infection.|pdf=|usr=}}
+{{tp|p=35430876|t=2022. Human Coronary Plaque T Cells Are Clonal and Cross-React to Virus and Self.|pdf=|usr=}}
+{{tp|p=35434485|t=2022. Replication-transcription complex of coronaviruses: functions of individual viral non-structural subunits, properties and architecture of their complexes.|pdf=|usr=}}
+{{tp|p=35434695|t=2022. Association of pyroptosis and severeness of COVID-19 as revealed by integrated single-cell transcriptome data analysis.|pdf=|usr=}}
+{{tp|p=35434729|t=2022. A path-based analysis of infected cell line and COVID-19 patient transcriptome reveals novel potential targets and drugs against SARS-CoV-2.|pdf=|usr=}}
+{{tp|p=35436306|t=2022. An endogenously activated antiviral state restricts SARS-CoV-2 infection in differentiated primary airway epithelial cells.|pdf=|usr=}}
+{{tp|p=35438176|t=2022. Molecular signature of postmortem lung tissue from COVID-19 patients suggests distinct trajectories driving mortality.|pdf=|usr=}}
+{{tp|p=35441166|t=2022. Different HMGCR-inhibiting statins vary in their association with increased survival in patients with COVID-19.|pdf=|usr=}}
+{{tp|p=35445579|t=2022. Recent insights into the structure and function of coronavirus ribonucleases.|pdf=|usr=}}
+{{tp|p=35446921|t=2022. Profiling metabolites and lipoproteins in COMETA, an Italian cohort of COVID-19 patients.|pdf=|usr=}}
+{{tp|p=35450534|t=2022. Epigenetic-related effects of COVID-19 on the human cells.|pdf=|usr=}}
+{{tp|p=35451177|t=2022. Photocatalytic Chemical Crosslinking for Profiling RNA-Protein Interactions in Living Cells.|pdf=|usr=}}
+{{tp|p=35453568|t=2022. Molecular Mechanism of Pancreatic beta-Cell Failure in Type 2 Diabetes Mellitus.|pdf=|usr=}}
+{{tp|p=35458690|t=2022. The Dysregulation of the Renin-Angiotensin System in COVID-19 Studied by Serum Proteomics: Angiotensinogen Increases with Disease Severity.|pdf=|usr=}}
+{{tp|p=35459226|t=2022. Human endogenous retrovirus K in the respiratory tract is associated with COVID-19 physiopathology.|pdf=|usr=}}
+{{tp|p=35459913|t=2022. Novel potential metabolic biomarker panel for early detection of severe COVID-19 using full-spectrum metabolome and whole-transcriptome analyses.|pdf=|usr=}}
+{{tp|p=35460571|t=2022. SARS-CoV-2 infection of human-induced pluripotent stem cells-derived lung lineage cells evokes inflammatory and chemosensory responses by targeting mitochondrial pathways.|pdf=|usr=}}
+{{tp|p=35461273|t=2022. SARS-COV-2 as potential microRNA sponge in COVID-19 patients.|pdf=|usr=}}
+{{tp|p=35461900|t=2022. Exosomal mediated signal transduction through artificial microRNA (amiRNA): A potential target for inhibition of SARS-CoV-2.|pdf=|usr=}}
+{{tp|p=35464324|t=2022. MicroRNAs as the Potential Regulators of SARS-CoV-2 Infection and Modifiers of the COVID-19 Clinical Features.|pdf=|usr=}}
+{{tp|p=35464396|t=2022. Multi-Omics Integration Reveals Only Minor Long-Term Molecular and Functional Sequelae in Immune Cells of Individuals Recovered From COVID-19.|pdf=|usr=}}
+{{tp|p=35464423|t=2022. Bioinformatics and System Biology Approach to Identify the Influences of COVID-19 on Rheumatoid Arthritis.|pdf=|usr=}}
+{{tp|p=35464437|t=2022. Long-Read RNA Sequencing Identifies Polyadenylation Elongation and Differential Transcript Usage of Host Transcripts During SARS-CoV-2 In Vitro Infection.|pdf=|usr=}}
+{{tp|p=35464969|t=2022. Rapid and Accurate Detection of SARS Coronavirus 2 by Nanopore Amplicon Sequencing.|pdf=|usr=}}
+{{tp|p=35465056|t=2022. BNT162b2 vaccination enhances interferon-JAK-STAT-regulated antiviral programs in COVID-19 patients infected with the SARS-CoV-2 Beta variant.|pdf=|usr=}}
+{{tp|p=35469237|t=2022. Epigenetic regulation of autophagy in coronavirus disease 2019 (COVID-19).|pdf=|usr=}}
+{{tp|p=35469796|t=2022. Angiopoietin 2 Is Associated with Vascular Necroptosis Induction in Coronavirus Disease 2019 Acute Respiratory Distress Syndrome.|pdf=|usr=}}
+{{tp|p=35470238|t=2022. Subgenomic RNA profiling suggests novel mechanism in coronavirus gene regulation and host adaption.|pdf=|usr=}}
+{{tp|p=35474745|t=2022. Multi-omics in COVID-19: Seeing the unseen but overlooked in the clinic.|pdf=|usr=}}
+{{tp|p=35474751|t=2022. Rapid synchronous type 1 IFN and virus-specific T cell responses characterize first wave non-severe SARS-CoV-2 infections.|pdf=|usr=}}
+{{tp|p=35476817|t=2022. Virus-host interaction networks as new antiviral drug targets for IAV and SARS-CoV-2.|pdf=|usr=}}
+{{tp|p=35477000|t=2022. Characterization and functional interrogation of the SARS-CoV-2 RNA interactome.|pdf=|usr=}}
+{{tp|p=35477940|t=2022. Integrated analysis of transcriptomic data reveals the platelet response in COVID-19 disease.|pdf=|usr=}}
+{{tp|p=35479098|t=2022. Asymptomatic SARS-CoV-2 Infection Is Associated With Higher Levels of Serum IL-17C, Matrix Metalloproteinase 10 and Fibroblast Growth Factors Than Mild Symptomatic COVID-19.|pdf=|usr=}}
+{{tp|p=35480316|t=2022. Global Gene Expression and Docking Profiling of COVID-19 Infection.|pdf=|usr=}}
+{{tp|p=35480886|t=2022. Serum NMR Profiling Reveals Differential Alterations in the Lipoproteome Induced by Pfizer-BioNTech Vaccine in COVID-19 Recovered Subjects and Naive Subjects.|pdf=|usr=}}
+{{tp|p=35482476|t=2022. Dysregulated Ligand-receptor interactions from single cell transcriptomics.|pdf=|usr=}}
+{{tp|p=35482673|t=2022. A Phenome-Wide Association Study of genes associated with COVID-19 severity reveals shared genetics with complex diseases in the Million Veteran Program.|pdf=|usr=}}
+{{tp|p=35490333|t=2022. Clinical applications of plasma proteomics and peptidomics: Towards precision medicine.|pdf=|usr=}}
+{{tp|p=35493473|t=2022. Persistence of SARS-CoV-2 Antibodies in Vaccinated Health Care Workers Analyzed by Coronavirus Antigen Microarray.|pdf=|usr=}}
+{{tp|p=35496775|t=2022. Cognitive deficits and memory impairments after COVID-19 (Covishield) vaccination.|pdf=|usr=}}
+{{tp|p=35501398|t=2022. Mapping the epithelial-immune cell interactome upon infection in the gut and the upper airways.|pdf=|usr=}}
+{{tp|p=35501841|t=2022. Single-cell transcriptomics reveal a unique memory-like NK cell subset that accumulates with ageing and correlates with disease severity in COVID-19.|pdf=|usr=}}
+{{tp|p=35502318|t=2022. Synthetic lethality-based prediction of anti-SARS-CoV-2 targets.|pdf=|usr=}}
+{{tp|p=35502829|t=2022. Bees can be trained to identify SARS-CoV-2 infected samples.|pdf=|usr=}}
+{{tp|p=35506060|t=2022. Transcriptomic analysis reveals optimal cytokine combinations for SARS-CoV-2-specific T cell therapy products.|pdf=|usr=}}
+{{tp|p=35508791|t=2022. Identification of serum metabolites enhancing inflammatory responses in COVID-19.|pdf=|usr=}}
+{{tp|p=35511057|t=2022. deepHPI: a comprehensive deep learning platform for accurate prediction and visualization of host-pathogen protein-protein interactions.|pdf=|usr=}}
+{{tp|p=35514065|t=2022. Phase Separation: "The Master Key" to Deciphering the Physiological and Pathological Functions of Cells.|pdf=|usr=}}
+{{tp|p=35520289|t=2022. Network Pharmacology and Comparative Transcriptome Reveals Biotargets and Mechanisms of Curcumol Treating Lung Adenocarcinoma Patients With COVID-19.|pdf=|usr=}}
+{{tp|p=35525888|t=2022. Bioinformatics analysis reveals molecular connections between non-alcoholic fatty liver disease (NAFLD) and COVID-19.|pdf=|usr=}}
+{{tp|p=35528173|t=2022. Discovering Common Pathophysiological Processes between COVID-19 and Cystic Fibrosis by Differential Gene Expression Pattern Analysis.|pdf=|usr=}}
+{{tp|p=35528178|t=2022. Recognition of Immune Cell Markers of COVID-19 Severity with Machine Learning Methods.|pdf=|usr=}}
+{{tp|p=35529862|t=2022. Identifying Immunological and Clinical Predictors of COVID-19 Severity and Sequelae by Mathematical Modeling.|pdf=|usr=}}
+{{tp|p=35531330|t=2022. Possible Mechanism of SARS-CoV-2 Nsp1-Mediated Control of Viral Gene Expression.|pdf=|usr=}}
+{{tp|p=35532162|t=2022. Serine Protease Inhibitors Restrict Host Susceptibility to SARS-CoV-2 Infections.|pdf=|usr=}}
+{{tp|p=35533462|t=2022. Network for network concept offers new insights into host- SARS-CoV-2 protein interactions and potential novel targets for developing antiviral drugs.|pdf=|usr=}}
+{{tp|p=35533463|t=2022. Enrichment analysis on regulatory subspaces: A novel direction for the superior description of cellular responses to SARS-CoV-2.|pdf=|usr=}}
+{{tp|p=35534210|t=2022. Endothelialitis, Microischemia, and Intussusceptive Angiogenesis in COVID-19.|pdf=|usr=}}
+{{tp|p=35536669|t=2022. A phase I trial of cyclosporine for hospitalized patients with COVID-19.|pdf=|usr=}}
+{{tp|p=35538614|t=2022. Individual genetic variability mainly of Proinflammatory cytokines, cytokine receptors, and toll-like receptors dictates pathophysiology of COVID-19 disease.|pdf=|usr=}}
+{{tp|p=35538880|t=2022. Proteomic profiling of lung diffusion impairment in the recovery stage of SARS-CoV-2-induced ARDS.|pdf=|usr=}}
+{{tp|p=35543509|t=2022. SARS-CoV-2 Variants of Concern Hijack IFITM2 for Efficient Replication in Human Lung Cells.|pdf=|usr=}}
+{{tp|p=35543533|t=2022. Impaired exercise capacity in post-COVID syndrome: the role of VWF-ADAMTS13 axis.|pdf=|usr=}}
+{{tp|p=35547851|t=2022. CNBP restricts SARS-CoV2 by regulating IFN and disrupting RNA-protein condensates.|pdf=|usr=}}
+{{tp|p=35554907|t=2022. Profiling SARS-CoV-2 Infection by High-Throughput Shotgun Proteomics.|pdf=|usr=}}
+{{tp|p=35554915|t=2022. Antiviral Strategies Against SARS-CoV-2: A Systems Biology Approach.|pdf=|usr=}}
+{{tp|p=35558576|t=2022. Identification of Diagnostic Gene Markers and Immune Infiltration in Systemic Lupus.|pdf=|usr=}}
+{{tp|p=35563697|t=2022. Cannabinoids Alleviate the LPS-Induced Cytokine Storm via Attenuating NLRP3 Inflammasome Signaling and TYK2-Mediated STAT3 Signaling Pathways In Vitro.|pdf=|usr=}}
+{{tp|p=35568706|t=2022. Sex differences in global metabolomic profiles of COVID-19 patients.|pdf=|usr=}}
+{{tp|p=35572561|t=2022. Laboratory Biomarkers for Diagnosis and Prognosis in COVID-19.|pdf=|usr=}}
+{{tp|p=35572676|t=2022. Metabolomic Profiling of Plasma Reveals Differential Disease Severity Markers in COVID-19 Patients.|pdf=|usr=}}
+{{tp|p=35573725|t=2022. Comparative Analysis of Long Non-Coding RNA Expression and Immune Response in Mild and Severe COVID-19.|pdf=|usr=}}
+{{tp|p=35574937|t=2022. A high-risk gut microbiota configuration associates with fatal hyperinflammatory immune and metabolic responses to SARS-CoV-2.|pdf=|usr=}}
+{{tp|p=35577777|t=2022. An Artificial Intelligence-guided signature reveals the shared host immune response in MIS-C and Kawasaki disease.|pdf=|usr=}}
+{{tp|p=35577935|t=2022. A comprehensive SARS-CoV-2 and COVID-19 review, Part 1: Intracellular overdrive for SARS-CoV-2 infection.|pdf=|usr=}}
+{{tp|p=35581179|t=2022. Proteomic characterization of Omicron SARS-CoV-2 host response.|pdf=|usr=}}
+{{tp|p=35582459|t=2022. Analyzing single cell transcriptome data from severe COVID-19 patients.|pdf=|usr=}}
+{{tp|p=35582503|t=2022. Transcriptomic analysis of asymptomatic and symptomatic severe Turkish patients in SARS-CoV-2 infection.|pdf=|usr=}}
+{{tp|p=35583305|t=2022. Retinal Findings of Hospitalized Neonates Recovered from COVID-19 Infection: A Prospective, Observational, Descriptive Study.|pdf=|usr=}}
+{{tp|p=35584589|t=2022. Roles of PIKfyve in multiple cellular pathways.|pdf=|usr=}}
+{{tp|p=35586248|t=2022. Sera Metabolomics Characterization of Patients at Different Stages in Wuhan Identifies Critical Biomarkers of COVID-19.|pdf=|usr=}}
+{{tp|p=35593050|t=2022. ScoMorphoFISH: A deep learning enabled toolbox for single-cell single-mRNA quantification and correlative (ultra-)morphometry.|pdf=|usr=}}
+{{tp|p=35598057|t=2022. Bioinformatic Analysis Underpinning the Frequent Occurrence of Immune Thrombocytopenic Purpura in COVID-19 Patients.|pdf=|usr=}}
+{{tp|p=35598647|t=2022. TRPC6 is altered in COVID-19 pneumonia.|pdf=|usr=}}
+{{tp|p=35599705|t=2022. Molecular analysis of vascular gene expression.|pdf=|usr=}}
+{{tp|p=35602196|t=2021. Reduced subgenomic RNA expression is a molecular indicator of asymptomatic SARS-CoV-2 infection.|pdf=|usr=}}
+{{tp|p=35604092|t=2022. The Translational Landscape of SARS-CoV-2-infected Cells Reveals Suppression of Innate Immune Genes.|pdf=|usr=}}
+{{tp|p=35604092|t=2022. The Translational Landscape of SARS-CoV-2-infected Cells Reveals Suppression of Innate Immune Genes.|pdf=|usr=}}
+{{tp|p=35605482|t=2022. Unveiling the nature's fruit basket to computationally identify Citrus sinensis csi-mir169-3p as a probable plant miRNA against Reference and Omicron SARS-CoV-2 genome.|pdf=|usr=}}
+{{tp|p=35610660|t=2022. Transcriptomic perspectives of memory-like NK cells and aging.|pdf=|usr=}}
+{{tp|p=35611119|t=2022. An antibody-based proximity labeling protocol to identify biotinylated interactors of SARS-CoV-2.|pdf=|usr=}}
+{{tp|p=35618891|t=2022. Host genetic basis of COVID-19: from methodologies to genes.|pdf=|usr=}}
+{{tp|p=35620480|t=2022. Identifying Methylation Signatures and Rules for COVID-19 With Machine Learning Methods.|pdf=|usr=}}
+{{tp|p=35622336|t=2022. Single-Cell Analysis and Tracking of Antigen-Specific T Cells: Integrating Paired Chain AIRR-Seq and Transcriptome Sequencing: A Method by the AIRR Community.|pdf=|usr=}}
+{{tp|p=35625619|t=2022. Immune-Related Protein Interaction Network in Severe COVID-19 Patients toward the Identification of Key Proteins and Drug Repurposing.|pdf=|usr=}}
+{{tp|p=35631558|t=2022. A Single-Cell Network-Based Drug Repositioning Strategy for Post-COVID-19 Pulmonary Fibrosis.|pdf=|usr=}}
+{{tp|p=35632654|t=2022. Associations and Disease-Disease Interactions of COVID-19 with Congenital and Genetic Disorders: A Comprehensive Review.|pdf=|usr=}}
+{{tp|p=35632738|t=2022. High Expression of HERV-K (HML-2) Might Stimulate Interferon in COVID-19 Patients.|pdf=|usr=}}
+{{tp|p=35632741|t=2022. SARS-CoV-2 Envelope (E) Protein Binds and Activates TLR2 Pathway: A Novel Molecular Target for COVID-19 Interventions.|pdf=|usr=}}
+{{tp|p=35632779|t=2022. Signaling Pathway Reporter Screen with SARS-CoV-2 Proteins Identifies nsp5 as a Repressor of p53 Activity.|pdf=|usr=}}
+{{tp|p=35634344|t=2022. The Genetic Risk for COVID-19 Severity Is Associated With Defective Immune Responses.|pdf=|usr=}}
+{{tp|p=35634577|t=2022. Immunopathogenic overlap between COVID-19 and tuberculosis identified from transcriptomic meta-analysis and human macrophage infection.|pdf=|usr=}}
+{{tp|p=35639648|t=2022. Pregnancy, Preeclampsia, and COVID-19: Susceptibility and Mechanisms: A Review Study.|pdf=|usr=}}
+{{tp|p=35639883|t=2022. Analysis of SARS-CoV-2 known and novel subgenomic mRNAs in cell culture, animal model, and clinical samples using LeTRS, a bioinformatic tool to identify unique sequence identifiers.|pdf=|usr=}}
+{{tp|p=35639922|t=2022. A distinct dexamethasone-dependent gene expression profile in the lungs of COVID-19 patients.|pdf=|usr=}}
+{{tp|p=35640981|t=2022. DeepLUCIA: predicting tissue-specific chromatin loops using Deep Learning-based Universal Chromatin Interaction Annotator.|pdf=|usr=}}
+{{tp|p=35645252|t=2022. Insights into Cardiovascular Defects and Cardiac Epigenome in the Context of COVID-19.|pdf=|usr=}}
+{{tp|p=35648852|t=2022. A systems biology approach identifies candidate drugs to reduce mortality in severely ill patients with COVID-19.|pdf=|usr=}}
+{{tp|p=35654986|t=2022. The impact of the suppression of highly connected protein interactions on the corona virus infection.|pdf=|usr=}}
+{{tp|p=35655464|t=2022. m6A Regulator-Mediated Methylation Modification Patterns and Characteristics in COVID-19 Patients.|pdf=|usr=}}
+{{tp|p=35657140|t=2022. Screening the hub genes and analyzing the mechanisms in discharged COVID-19 patients retesting positive through bioinformatics analysis.|pdf=|usr=}}
+{{tp|p=35661108|t=2022. RNA editing detection in SARS-CoV-2 transcriptome should be different from traditional SNV identification.|pdf=|usr=}}
+{{tp|p=35661455|t=2022. Deregulation of ceRNA Networks in Frontal Cortex and Choroid Plexus of Brain during SARS-CoV-2 Infection Aggravates Neurological Manifestations: An Insight from Bulk and Single-Cell Transcriptomic Analyses.|pdf=|usr=}}
+{{tp|p=35662463|t=2022. PEPPI: Whole-proteome Protein-protein Interaction Prediction through Structure and Sequence Similarity, Functional Association, and Machine Learning.|pdf=|usr=}}
+{{tp|p=35663631|t=2022. Proteomic Analyses Unveil Actionable Disease Pathways in COVID-19: A Step Toward Targeted Therapies.|pdf=|usr=}}
+{{tp|p=35663953|t=2022. N6-Acetyl-L-Lysine and p-Cresol as Key Metabolites in the Pathogenesis of COVID-19 in Obese Patients.|pdf=|usr=}}
+{{tp|p=35664076|t=2022. The interplay between lncRNAs, RNA-binding proteins and viral genome during SARS-CoV-2 infection reveals strong connections with regulatory events involved in RNA metabolism and immune response.|pdf=|usr=}}
+{{tp|p=35664804|t=2022. The Ramp Atlas: facilitating tissue and cell-specific ramp sequence analyses through an intuitive web interface.|pdf=|usr=}}
+{{tp|p=35664994|t=2022. Whole Genome DNA and RNA Sequencing of Whole Blood Elucidates the Genetic Architecture of Gene Expression Underlying a Wide Range of Diseases.|pdf=|usr=}}
+{{tp|p=35669390|t=2022. Identification of novel regulatory pathways across normal human bronchial epithelial cell lines (NHBEs) and peripheral blood mononuclear cell lines (PBMCs) in COVID-19 patients using transcriptome analysis.|pdf=|usr=}}
+==Full dataset second search term==
+'''these were retrieved by the filtered second omics search and seem to be important'''
+{{tp|p=33915460|t=2021. Ebsulfur and Ebselen as highly potent scaffolds for the development of potential SARS-CoV-2 antivirals.|pdf=|usr=}}
+{{tp|p=32721790|t=2020. Mechanistic insights of host cell fusion of SARS-CoV-1 and SARS-CoV-2 from atomic resolution structure and membrane dynamics.|pdf=|usr=}}
+{{tp|p=32818817|t=2020. Host-membrane interacting interface of the SARS coronavirus envelope protein: Immense functional potential of C-terminal domain.|pdf=|usr=}}
+{{tp|p=32916377|t=2020. Silico analysis of interaction between full-length SARS-CoV2 S protein with human Ace2 receptor: Modelling, docking, MD simulation.|pdf=|usr=}}
+{{tp|p=34883069|t=2022. SARS-CoV-2 spike binding to ACE2 is stronger and longer ranged due to glycan interaction.|pdf=|usr=}}
+{{tp|p=33631204|t=2021. Ca(2+)-dependent mechanism of membrane insertion and destabilization by the SARS-CoV-2 fusion peptide.|pdf=|usr=}}
+{{tp|p=33607086|t=2021. Biomechanical characterization of SARS-CoV-2 spike RBD and human ACE2 protein-protein interaction.|pdf=|usr=}}
+{{tp|p=33484712|t=2021. Elucidation of interactions regulating conformational stability and dynamics of SARS-CoV-2 S-protein.|pdf=|usr=}}
+{{tp|p=33460600|t=2021. Improving SARS-CoV-2 structures: Peer review by early coordinate release.|pdf=|usr=}}
+{{tp|p=34087218|t=2021. Neuropilin-1 assists SARS-CoV-2 infection by stimulating the separation of Spike protein S1 and S2.|pdf=|usr=}}
+{{tp|p=33675757|t=2021. Binding mode of SARS-CoV-2 fusion peptide to human cellular membrane.|pdf=|usr=}}
+{{tp|p=33359834|t=2021. The Molecular Mechanism of Domain Swapping of the C-Terminal Domain of the SARS-Coronavirus Main Protease.|pdf=|usr=}}
+{{tp|p=35378756|t=2022. CD169-mediated restrictive SARS-CoV-2 infection of macrophages induces pro-inflammatory responses.|pdf=|usr=}}
+{{tp|p=35043110|t=2022. Shift of lung macrophage composition is associated with COVID-19 disease severity and recovery.|pdf=|usr=}}
+{{tp|p=34127974|t=2022. Multi-color super-resolution imaging to study human coronavirus RNA during cellular infection.|pdf=|usr=}}
+{{tp|p=35132414|t=2022. SARS-CoV-2 invades cognitive centers of the brain and induces Alzheimer's-like neuropathology.|pdf=|usr=}}
+{{tp|p=34189530|t=2021. Super.Complex: A supervised machine learning pipeline for molecular complex detection in protein-interaction networks.|pdf=|usr=}}
+{{tp|p=34873599|t=2021. A large-scale systematic survey of SARS-CoV-2 antibodies reveals recurring molecular features.|pdf=|usr=}}
+{{tp|p=33758856|t=2021. Mutational escape from the polyclonal antibody response to SARS-CoV-2 infection is largely shaped by a single class of antibodies.|pdf=|usr=}}
+{{tp|p=34159327|t=2021. Double-stranded RNA drives SARS-CoV-2 nucleocapsid protein to undergo phase separation at specific temperatures.|pdf=|usr=}}
+{{tp|p=33501444|t=2021. An Autoantigen Atlas from Human Lung HFL1 Cells Offers Clues to Neurological and Diverse Autoimmune Manifestations of COVID-19.|pdf=|usr=}}
+{{tp|p=33442700|t=2021. Neuropilin-1 Assists SARS-CoV-2 Infection by Stimulating the Separation of Spike Protein Domains S1 and S2.|pdf=|usr=}}
+{{tp|p=33299996|t=2021. Ca (2+) -dependent mechanism of membrane insertion and destabilization by the SARS-CoV-2 fusion peptide.|pdf=|usr=}}
+{{tp|p=33564772|t=2021. Multiscale three-dimensional imaging of intact human organs down to the cellular scale using hierarchical phase-contrast tomography.|pdf=|usr=}}
+{{tp|p=33083801|t=2021. Reconstructed signaling and regulatory networks identify potential drugs for SARS-CoV-2 infection.|pdf=|usr=}}
+{{tp|p=32995791|t=2020. Baseline T cell immune phenotypes predict virologic and disease control upon SARS-CoV infection.|pdf=|usr=}}
+{{tp|p=33083802|t=2020. Progressive and accurate assembly of multi-domain protein structures from cryo-EM density maps.|pdf=|usr=}}
+{{tp|p=32511343|t=2020. Controlling the SARS-CoV-2 Spike Glycoprotein Conformation.|pdf=|usr=}}
+{{tp|p=32511405|t=2020. Distinct conformational states of SARS-CoV-2 spike protein.|pdf=|usr=}}
+{{tp|p=32511375|t=2020. A single-cell RNA expression map of human coronavirus entry factors.|pdf=|usr=}}
+{{tp|p=32577653|t=2020. SARS-CoV-2 nucleocapsid protein undergoes liquid-liquid phase separation stimulated by RNA and partitions into phases of human ribonucleoproteins.|pdf=|usr=}}
+{{tp|p=32766587|t=2020. The SARS-CoV-2 Nucleocapsid phosphoprotein forms mutually exclusive condensates with RNA and the membrane-associated M protein.|pdf=|usr=}}
+{{tp|p=32766577|t=2020. SARS-CoV-2 Spike Protein Interacts with Multiple Innate Immune Receptors.|pdf=|usr=}}
+{{tp|p=32511311|t=2020. Structural modeling of 2019-novel coronavirus (nCoV) spike protein reveals a proteolytically-sensitive activation loop as a distinguishing feature compared to SARS-CoV and related SARS-like coronaviruses.|pdf=|usr=}}
+{{tp|p=32587966|t=2020. The SARS-CoV-2 nucleocapsid protein is dynamic, disordered, and phase separates with RNA.|pdf=|usr=}}
+{{tp|p=32817938|t=2020. An ultra-potent synthetic nanobody neutralizes SARS-CoV-2 by locking Spike into an inactive conformation.|pdf=|usr=}}
+{{tp|p=32677879|t=2020. Synthetic repurposing of drugs against hypertension: a datamining method based on association rules and a novel discrete algorithm.|pdf=|usr=}}
+{{tp|p=33504336|t=2021. Development of the reproduction number from coronavirus SARS-CoV-2 case data in Germany and implications for political measures.|pdf=|usr=}}
+{{tp|p=34535131|t=2021. Lung disease network reveals impact of comorbidity on SARS-CoV-2 infection and opportunities of drug repurposing.|pdf=|usr=}}
+{{tp|p=33892639|t=2021. Online biophysical predictions for SARS-CoV-2 proteins.|pdf=|usr=}}
+{{tp|p=32611313|t=2020. Identification of a druggable binding pocket in the spike protein reveals a key site for existing drugs potentially capable of combating Covid-19 infectivity.|pdf=|usr=}}
+{{tp|p=35241064|t=2022. Alterations in the oral microbiome of individuals with a healthy oral environment following COVID-19 vaccination.|pdf=|usr=}}
+{{tp|p=34674775|t=2021. Computational determination of toxicity risks associated with a selection of approved drugs having demonstrated activity against COVID-19.|pdf=|usr=}}
+{{tp|p=34308111|t=2021. No evidence that vitamin D is able to prevent or affect the severity of COVID-19 in individuals with European ancestry: a Mendelian randomisation study of open data.|pdf=|usr=}}
+{{tp|p=35322889|t=2022. Cardiovascular drugs and COVID-19 clinical outcomes: a systematic review and meta-analysis of randomized controlled trials.|pdf=|usr=}}
+{{tp|p=32745239|t=2020. Abnormal concentration of porphyrins in serum from COVID-19 patients.|pdf=|usr=}}
+{{tp|p=34632567|t=2022. Pyroptosis targeting via mitochondria: An educated guess to innovate COVID-19 therapies.|pdf=|usr=}}
+{{tp|p=34962256|t=2022. Computationally prioritized drugs inhibit SARS-CoV-2 infection and syncytia formation.|pdf=|usr=}}
+{{tp|p=34058750|t=2021. Quercetin for COVID-19 and DENGUE co-infection: a potential therapeutic strategy of targeting critical host signal pathways triggered by SARS-CoV-2 and DENV.|pdf=|usr=}}
+{{tp|p=33757279|t=2021. Identification and characterization of circRNAs encoded by MERS-CoV, SARS-CoV-1 and SARS-CoV-2.|pdf=|usr=}}
+{{tp|p=32924062|t=2021. Origin-independent analysis links SARS-CoV-2 local genomes with COVID-19 incidence and mortality.|pdf=|usr=}}
+{{tp|p=32917504|t=2021. Overexpression of the Severe Acute Respiratory Syndrome Coronavirus-2 Receptor, Angiotensin-Converting Enzyme 2, in Diabetic Kidney Disease: Implications for Kidney Injury in Novel Coronavirus Disease 2019.|pdf=|usr=}}
+{{tp|p=33203441|t=2020. Prevalence of readily detected amyloid blood clots in 'unclotted' Type 2 Diabetes Mellitus and COVID-19 plasma: a preliminary report.|pdf=|usr=}}
+{{tp|p=32750108|t=2020. Endothelial dysfunction in COVID-19: a position paper of the ESC Working Group for Atherosclerosis and Vascular Biology, and the ESC Council of Basic Cardiovascular Science.|pdf=|usr=}}
+{{tp|p=34019795|t=2021. Fab-dimerized glycan-reactive antibodies are a structural category of natural antibodies.|pdf=|usr=}}
+{{tp|p=34010620|t=2021. High-resolution profiling of pathways of escape for SARS-CoV-2 spike-binding antibodies.|pdf=|usr=}}
+{{tp|p=33831372|t=2021. SARS-CoV-2 evolution in an immunocompromised host reveals shared neutralization escape mechanisms.|pdf=|usr=}}
+{{tp|p=33974910|t=2021. Structural insight into SARS-CoV-2 neutralizing antibodies and modulation of syncytia.|pdf=|usr=}}
+{{tp|p=32353252|t=2020. Development of CRISPR as an Antiviral Strategy to Combat SARS-CoV-2 and Influenza.|pdf=|usr=}}
+{{tp|p=32155444|t=2020. Structure, Function, and Antigenicity of the SARS-CoV-2 Spike Glycoprotein.|pdf=|usr=}}
+{{tp|p=33792836|t=2021. Piece of the puzzle: Remdesivir disassembles the multimeric SARS-CoV-2 RNA-dependent RNA polymerase complex.|pdf=|usr=}}
+{{tp|p=32992409|t=2021. SARS-COV-2 (COVID-19): Cellular and biochemical properties and pharmacological insights into new therapeutic developments.|pdf=|usr=}}
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+{{tp|p=34788130|t=2021. The Impact of IFNlambda4 on the Adaptive Immune Response to SARS-CoV-2 Infection.|pdf=|usr=}}
+{{tp|p=35148193|t=2022. Exploring the Link Between Vitamin D Deficiency and Cytokine Storms in COVID-19 Patients: An In Silico Analysis.|pdf=|usr=}}
+{{tp|p=32964419|t=2021. Neuroinvasion of SARS-CoV-2 may play a role in the breakdown of the respiratory center of the brain.|pdf=|usr=}}
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+{{tp|p=35554920|t=2022. Biorisk Management for SARS-CoV-2 Research in a Biosafety Level-3 Core Facility.|pdf=|usr=}}
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+{{tp|p=34014525|t=2021. Viral PDZ Binding Motifs Influence Cell Behavior Through the Interaction with Cellular Proteins Containing PDZ Domains.|pdf=|usr=}}
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+{{tp|p=35236990|t=2022. The SARS-CoV-2 spike reversibly samples an open-trimer conformation exposing novel epitopes.|pdf=|usr=}}
+{{tp|p=35536253|t=2022. BioUML-towards a universal research platform.|pdf=|usr=}}
+{{tp|p=33688867|t=2021. 1'-Ribose cyano substitution allows Remdesivir to effectively inhibit nucleotide addition and proofreading during SARS-CoV-2 viral RNA replication.|pdf=|usr=}}
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+{{tp|p=33295347|t=2020. Tracing the driving forces responsible for the remarkable infectivity of 2019-nCoV: 1. Receptor binding domain in its bound and unbound states.|pdf=|usr=}}
+{{tp|p=34506164|t=2021. Dynamics-Evolution Correspondence in Protein Structures.|pdf=|usr=}}
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+{{tp|p=34914544|t=2022. High-affinity, neutralizing antibodies to SARS-CoV-2 can be made without T follicular helper cells.|pdf=|usr=}}
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+{{tp|p=34388849|t=2021. Platelet Surface Protein Expression and Reactivity upon TRAP Stimulation after BNT162b2 Vaccination.|pdf=|usr=}}
+{{tp|p=34529510|t=2021. Increased Blood Monocytic Myeloid Derived Suppressor Cells but Low Regulatory T Lymphocytes in Patients with Mild COVID-19.|pdf=|usr=}}
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+{{tp|p=33637958|t=2021. SARS-CoV-2 nsp12 attenuates type I interferon production by inhibiting IRF3 nuclear translocation.|pdf=|usr=}}
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+{{tp|p=35013790|t=2022. The MEK1/2-inhibitor ATR-002 efficiently blocks SARS-CoV-2 propagation and alleviates pro-inflammatory cytokine/chemokine responses.|pdf=|usr=}}
+{{tp|p=35141964|t=2022. Cellular and molecular atlas of the placenta from a COVID-19 pregnant woman infected at midgestation highlights the defective impacts on foetal health.|pdf=|usr=}}
+{{tp|p=35477024|t=2022. Inter-domain communication in SARS-CoV-2 spike proteins controls protease-triggered cell entry.|pdf=|usr=}}
+{{tp|p=35235831|t=2022. BCG vaccination provides protection against IAV but not SARS-CoV-2.|pdf=|usr=}}
+{{tp|p=35172173|t=2022. Cryo-EM structure of the SARS-CoV-2 Omicron spike.|pdf=|usr=}}
+{{tp|p=35421379|t=2022. Humanized mice reveal a macrophage-enriched gene signature defining human lung tissue protection during SARS-CoV-2 infection.|pdf=|usr=}}
+{{tp|p=34592170|t=2021. Potent neutralization of SARS-CoV-2 variants of concern by an antibody with an uncommon genetic signature and structural mode of spike recognition.|pdf=|usr=}}
+{{tp|p=34739850|t=2021. Selective functional antibody transfer into the breastmilk after SARS-CoV-2 infection.|pdf=|usr=}}
+{{tp|p=34004174|t=2021. Mapping the SARS-CoV-2 spike glycoprotein-derived peptidome presented by HLA class II on dendritic cells.|pdf=|usr=}}
+{{tp|p=34166618|t=2021. Identification of presented SARS-CoV-2 HLA class I and HLA class II peptides using HLA peptidomics.|pdf=|usr=}}
+{{tp|p=33778788|t=2021. A comprehensive analysis and resource to use CRISPR-Cas13 for broad-spectrum targeting of RNA viruses.|pdf=|usr=}}
+{{tp|p=33377122|t=2020. Hydroxychloroquine Inhibits the Trained Innate Immune Response to Interferons.|pdf=|usr=}}
+{{tp|p=35128513|t=2022. Multi-color super-resolution imaging to study human coronavirus RNA during cellular infection.|pdf=|usr=}}
+{{tp|p=34465913|t=2021. Mechanical activation of spike fosters SARS-CoV-2 viral infection.|pdf=|usr=}}
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+{{tp|p=33742149|t=2021. SARS-CoV-2 spike protein interacts with and activates TLR41.|pdf=|usr=}}
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+{{tp|p=34685765|t=2021. Shedding Light on the Possible Link between ADAMTS13 and Vaccine-Induced Thrombotic Thrombocytopenia.|pdf=|usr=}}
+{{tp|p=34831382|t=2021. Identification of Cellular Factors Required for SARS-CoV-2 Replication.|pdf=|usr=}}
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+{{tp|p=33918600|t=2021. Assembly and Entry of Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV2): Evaluation Using Virus-Like Particles.|pdf=|usr=}}
+{{tp|p=33238570|t=2020. The Potential Role of Osteopontin and Furin in Worsening Disease Outcomes in COVID-19 Patients with Pre-Existing Diabetes.|pdf=|usr=}}
+{{tp|p=32443810|t=2020. A Structural View of SARS-CoV-2 RNA Replication Machinery: RNA Synthesis, Proofreading and Final Capping.|pdf=|usr=}}
+{{tp|p=32545714|t=2020. Reaction Cycles of Halogen Species in the Immune Defense: Implications for Human Health and Diseases and the Pathology and Treatment of COVID-19.|pdf=|usr=}}
+{{tp|p=34047452|t=2021. SARS-CoV-2 first contact: Spike-ACE2 interactions in COVID-19.|pdf=|usr=}}
+{{tp|p=34265150|t=2021. Hidden in Plain Sight: Natural Products of Commensal Microbiota as an Environmental Selection Pressure for the Rise of New Variants of SARS-CoV-2.|pdf=|usr=}}
+{{tp|p=32986926|t=2021. Binding of SARS-CoV-2 to Cell Receptors: A Tale of Molecular Evolution.|pdf=|usr=}}
+{{tp|p=32663362|t=2020. ACE2, the Receptor that Enables Infection by SARS-CoV-2: Biochemistry, Structure, Allostery and Evaluation of the Potential Development of ACE2 Modulators.|pdf=|usr=}}
+{{tp|p=33217417|t=2021. Lower Respiratory Tract Myeloid Cells Harbor SARS-Cov-2 and Display an Inflammatory Phenotype.|pdf=|usr=}}
+{{tp|p=32004165|t=2020. Identification of a novel coronavirus causing severe pneumonia in human: a descriptive study.|pdf=|usr=}}
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+{{tp|p=32390611|t=2020. How we should respond to the Coronavirus SARS-CoV-2 outbreak: A German perspective.|pdf=|usr=}}
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+{{tp|p=33493182|t=2021. Furin cleavage of SARS-CoV-2 Spike promotes but is not essential for infection and cell-cell fusion.|pdf=|usr=}}
+{{tp|p=33886690|t=2021. The SARS-CoV-2 and other human coronavirus spike proteins are fine-tuned towards temperature and proteases of the human airways.|pdf=|usr=}}
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+{{tp|p=35043109|t=2022. The risk of COVID-19 death is much greater and age-dependent with type I IFN autoantibodies.|pdf=|usr=}}
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+{{tp|p=35424441|t=2021. Combination of system biology to probe the anti-viral activity of andrographolide and its derivative against COVID-19.|pdf=|usr=}}
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+{{tp|p=34413139|t=2021. Autoantibodies neutralizing type I IFNs are present in ~4% of uninfected individuals over 70 years old and account for ~20% of COVID-19 deaths.|pdf=|usr=}}
+{{tp|p=34593915|t=2021. COVIDrugNet: a network-based web tool to investigate the drugs currently in clinical trial to contrast COVID-19.|pdf=|usr=}}
+{{tp|p=34620887|t=2021. A smart mask for active defense against airborne pathogens.|pdf=|usr=}}
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+{{tp|p=33884756|t=2021. Single-cell systems biology, COVID-19, and vaccination.|pdf=|usr=}}
+{{tp|p=33291622|t=2020. Type I Interferon Signature in Chilblain-Like Lesions Associated with the COVID-19 Pandemic.|pdf=|usr=}}
+{{tp|p=32657473|t=2020. TWIRLS, a knowledge-mining technology, suggests a possible mechanism for the pathological changes in the human host after coronavirus infection via ACE2.|pdf=|usr=}}
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+{{tp|p=33971404|t=2021. Circulating extracellular vesicles are endowed with enhanced procoagulant activity in SARS-CoV-2 infection.|pdf=|usr=}}
+{{tp|p=35600330|t=2022. Highly multiplexed immune repertoire sequencing links multiple lymphocyte classes with severity of response to COVID-19.|pdf=|usr=}}
+{{tp|p=35323112|t=2022. The inherent flexibility of receptor binding domains in SARS-CoV-2 spike protein.|pdf=|usr=}}
+{{tp|p=35323111|t=2022. Conformational dynamics and allosteric modulation of the SARS-CoV-2 spike.|pdf=|usr=}}
+{{tp|p=35294338|t=2022. Coagulation factors directly cleave SARS-CoV-2 spike and enhance viral entry.|pdf=|usr=}}
+{{tp|p=33443016|t=2021. Cytokine ranking via mutual information algorithm correlates cytokine profiles with presenting disease severity in patients infected with SARS-CoV-2.|pdf=|usr=}}
+{{tp|p=33570492|t=2021. The allosteric modulation of complement C5 by knob domain peptides.|pdf=|usr=}}
+{{tp|p=34930527|t=2021. 3D virtual histopathology of cardiac tissue from Covid-19 patients based on phase-contrast X-ray tomography.|pdf=|usr=}}
+{{tp|p=34350827|t=2021. Unsupervised machine learning reveals key immune cell subsets in COVID-19, rhinovirus infection, and cancer therapy.|pdf=|usr=}}
+{{tp|p=33899740|t=2021. High infectiousness immediately before COVID-19 symptom onset highlights the importance of continued contact tracing.|pdf=|usr=}}
+{{tp|p=32452762|t=2020. SARS-CoV-2 strategically mimics proteolytic activation of human ENaC.|pdf=|usr=}}
+{{tp|p=32559343|t=2020. Rationale for targeting complement in COVID-19.|pdf=|usr=}}
+{{tp|p=35527514|t=2022. ADAM10 and ADAM17 promote SARS-CoV-2 cell entry and spike protein-mediated lung cell fusion.|pdf=|usr=}}
+{{tp|p=34989664|t=2022. Obatoclax inhibits SARS-CoV-2 entry by altered endosomal acidification and impaired cathepsin and furin activity in vitro.|pdf=|usr=}}
+{{tp|p=33258732|t=2020. Detection of breastmilk antibodies targeting SARS-CoV-2 nucleocapsid, spike and receptor-binding-domain antigens.|pdf=|usr=}}
+{{tp|p=32178593|t=2020. Emerging WuHan (COVID-19) coronavirus: glycan shield and structure prediction of spike glycoprotein and its interaction with human CD26.|pdf=|usr=}}
+{{tp|p=33235976|t=2020. Combating COVID-19 with tissue engineering: a review.|pdf=|usr=}}
+{{tp|p=35221835|t=2022. Environmental factors influencing the transmission of the coronavirus 2019: a review.|pdf=|usr=}}
+{{tp|p=33223326|t=2021. Endocrine disrupting chemicals and COVID-19 relationships: A computational systems biology approach.|pdf=|usr=}}
+{{tp|p=32846644|t=2020. Imiquimod - A toll like receptor 7 agonist - Is an ideal option for management of COVID 19.|pdf=|usr=}}
+{{tp|p=32959998|t=2020. Fatal lymphocytic cardiac damage in coronavirus disease 2019 (COVID-19): autopsy reveals a ferroptosis signature.|pdf=|usr=}}
+{{tp|p=35151223|t=2022. Antioxidant, anti-inflammatory and immunomodulatory roles of vitamins in COVID-19 therapy.|pdf=|usr=}}
+{{tp|p=33812315|t=2021. Structure-based drug design of an inhibitor of the SARS-CoV-2 (COVID-19) main protease using free software: A tutorial for students and scientists.|pdf=|usr=}}
+{{tp|p=32919938|t=2020. Macrophage responses associated with COVID-19: A pharmacological perspective.|pdf=|usr=}}
+{{tp|p=32444400|t=2020. COVID-19 and the nicotinic cholinergic system.|pdf=|usr=}}
+{{tp|p=32269085|t=2020. Pathogenesis of COVID-19 from a cell biology perspective.|pdf=|usr=}}
+{{tp|p=34112047|t=2022. Vitamin D attenuates COVID-19 complications via modulation of proinflammatory cytokines, antiviral proteins, and autophagy.|pdf=|usr=}}
+{{tp|p=34654347|t=2021. Cross-talk between immune system and microbiota in COVID-19.|pdf=|usr=}}
+{{tp|p=35157347|t=2022. Structural polymorphism of coiled-coils from the stalk domain of SARS-CoV-2 spike protein.|pdf=|usr=}}
+{{tp|p=33368679|t=2021. Spatial and temporal roles of SARS-CoV PL(pro) -A snapshot.|pdf=|usr=}}
+{{tp|p=32562316|t=2020. A proposed role for the SARS-CoV-2 nucleocapsid protein in the formation and regulation of biomolecular condensates.|pdf=|usr=}}
+{{tp|p=33449359|t=2021. Dynamics and electrostatics define an allosteric druggable site within the receptor-binding domain of SARS-CoV-2 spike protein.|pdf=|usr=}}
+{{tp|p=32449939|t=2020. SARS-CoV-2 spike glycoprotein-binding proteins expressed by upper respiratory tract bacteria may prevent severe viral infection.|pdf=|usr=}}
+{{tp|p=32379896|t=2020. Knowledge-based structural models of SARS-CoV-2 proteins and their complexes with potential drugs.|pdf=|usr=}}
+{{tp|p=32374074|t=2020. Potential anti-SARS-CoV-2 drug candidates identified through virtual screening of the ChEMBL database for compounds that target the main coronavirus protease.|pdf=|usr=}}
+{{tp|p=33503469|t=2021. Nicotinic cholinergic system and COVID-19: In silico identification of interactions between alpha7 nicotinic acetylcholine receptor and the cryptic epitopes of SARS-Co-V and SARS-CoV-2 Spike glycoproteins.|pdf=|usr=}}
+{{tp|p=33838172|t=2021. Is SARS-CoV-2 Spike glycoprotein impairing macrophage function via alpha7-nicotinic acetylcholine receptors?|pdf=|usr=}}
+{{tp|p=33640537|t=2021. Inflammation, immunity and potential target therapy of SARS-COV-2: A total scale analysis review.|pdf=|usr=}}
+{{tp|p=33038452|t=2020. Molecular mechanisms of the novel coronavirus SARS-CoV-2 and potential anti-COVID19 pharmacological targets since the outbreak of the pandemic.|pdf=|usr=}}
+{{tp|p=33855053|t=2021. Stroke in SARS-CoV-2 Infection: A Pictorial Overview of the Pathoetiology.|pdf=|usr=}}
+{{tp|p=33604359|t=2021. Microvascular Angiopathic Consequences of COVID-19.|pdf=|usr=}}
+{{tp|p=35517495|t=2022. SARS-CoV-2 Employ BSG/CD147 and ACE2 Receptors to Directly Infect Human Induced Pluripotent Stem Cell-Derived Kidney Podocytes.|pdf=|usr=}}
+{{tp|p=35141167|t=2021. Severe COVID-19 Is Associated With an Altered Upper Respiratory Tract Microbiome.|pdf=|usr=}}
+{{tp|p=34869058|t=2021. A Pro-Inflammatory Gut Microbiome Characterizes SARS-CoV-2 Infected Patients and a Reduction in the Connectivity of an Anti-Inflammatory Bacterial Network Associates With Severe COVID-19.|pdf=|usr=}}
+{{tp|p=32850499|t=2020. Functional Pangenome Analysis Shows Key Features of E Protein Are Preserved in SARS and SARS-CoV-2.|pdf=|usr=}}
+{{tp|p=33304243|t=2020. Neuropathobiology of COVID-19: The Role for Glia.|pdf=|usr=}}
+{{tp|p=33681145|t=2021. Viroporins vs. Other Pore-Forming Proteins: What Lessons Can We Take?|pdf=|usr=}}
+{{tp|p=35573805|t=2022. Open data facilitate resilience in science during the COVID-19 pandemic.|pdf=|usr=}}
+{{tp|p=34925459|t=2021. Approaching Genetics Through the MHC Lens: Tools and Methods for HLA Research.|pdf=|usr=}}
+{{tp|p=34603376|t=2021. A Role of Variance in Interferon Genes to Disease Severity in COVID-19 Patients.|pdf=|usr=}}
+{{tp|p=35663932|t=2022. Dysregulated Interferon Response and Immune Hyperactivation in Severe COVID-19: Targeting STATs as a Novel Therapeutic Strategy.|pdf=|usr=}}
+{{tp|p=35572555|t=2022. Underlying Co-Morbidity Reveals Unique Immune Signatures in Type II Diabetes Patients Infected With SARS-CoV2.|pdf=|usr=}}
+{{tp|p=35386702|t=2022. Plasma Cytokine Atlas Reveals the Importance of TH2 Polarization and Interferons in Predicting COVID-19 Severity and Survival.|pdf=|usr=}}
+{{tp|p=35359960|t=2022. On the Origin of Neutrophil Extracellular Traps in COVID-19.|pdf=|usr=}}
+{{tp|p=35350780|t=2022. How the Innate Immune System of the Blood Contributes to Systemic Pathology in COVID-19-Induced ARDS and Provides Potential Targets for Treatment.|pdf=|usr=}}
+{{tp|p=35058926|t=2021. Hypozincemia in COVID-19 Patients Correlates With Stronger Antibody Response.|pdf=|usr=}}
+{{tp|p=34603283|t=2021. Long-Term Elevated Inflammatory Protein Levels in Asymptomatic SARS-CoV-2 Infected Individuals.|pdf=|usr=}}
+{{tp|p=34484241|t=2021. Cellular and Molecular Effects of SARS-CoV-2 Linking Lung Infection to the Brain.|pdf=|usr=}}
+{{tp|p=34093595|t=2021. Broad T Cell Targeting of Structural Proteins After SARS-CoV-2 Infection: High Throughput Assessment of T Cell Reactivity Using an Automated Interferon Gamma Release Assay.|pdf=|usr=}}
+{{tp|p=33912161|t=2021. Virus Caused Imbalance of Type I IFN Responses and Inflammation in COVID-19.|pdf=|usr=}}
+{{tp|p=33692801|t=2021. The Outcome of Critically Ill COVID-19 Patients Is Linked to Thromboinflammation Dominated by the Kallikrein/Kinin System.|pdf=|usr=}}
+{{tp|p=33643285|t=2020. VISTA: A Target to Manage the Innate Cytokine Storm.|pdf=|usr=}}
+{{tp|p=33584719|t=2020. Cytokine Signature Induced by SARS-CoV-2 Spike Protein in a Mouse Model.|pdf=|usr=}}
+{{tp|p=34805220|t=2021. Transient Receptor Potential Vanilloid Subtype 1: Potential Role in Infection, Susceptibility, Symptoms and Treatment of COVID-19.|pdf=|usr=}}
+{{tp|p=34095160|t=2021. iOntoBioethics: A Framework for the Agile Development of Bioethics Ontologies in Pandemics, Applied to COVID-19.|pdf=|usr=}}
+{{tp|p=35444632|t=2022. Impact of SARS-CoV-2 on Host Factors Involved in Mental Disorders.|pdf=|usr=}}
+{{tp|p=35283834|t=2022. Interactions of Severe Acute Respiratory Syndrome Coronavirus 2 Protein E With Cell Junctions and Polarity PSD-95/Dlg/ZO-1-Containing Proteins.|pdf=|usr=}}
+{{tp|p=34707577|t=2021. Microbiome Profiling Using Shotgun Metagenomic Sequencing Identified Unique Microorganisms in COVID-19 Patients With Altered Gut Microbiota.|pdf=|usr=}}
+{{tp|p=33815346|t=2021. Learning From Mistakes: The Role of Phages in Pandemics.|pdf=|usr=}}
+{{tp|p=33101264|t=2020. Genetic Spectrum and Distinct Evolution Patterns of SARS-CoV-2.|pdf=|usr=}}
+{{tp|p=33042039|t=2020. Flexible, Functional, and Familiar: Characteristics of SARS-CoV-2 Spike Protein Evolution.|pdf=|usr=}}
+{{tp|p=35087864|t=2021. CRISPR Technology in Gene-Editing-Based Detection and Treatment of SARS-CoV-2.|pdf=|usr=}}
+{{tp|p=35004841|t=2021. Energy Bilocalization Effect and the Emergence of Molecular Functions in Proteins.|pdf=|usr=}}
+{{tp|p=33928117|t=2021. Glycans of SARS-CoV-2 Spike Protein in Virus Infection and Antibody Production.|pdf=|usr=}}
+{{tp|p=33912590|t=2021. Gastrointestinal Microenvironment and the Gut-Lung Axis in the Immune Responses of Severe COVID-19.|pdf=|usr=}}
+{{tp|p=33659275|t=2021. Molecular Mechanisms Behind Anti SARS-CoV-2 Action of Lactoferrin.|pdf=|usr=}}
+{{tp|p=33537341|t=2020. Deletion of BST2 Cytoplasmic and Transmembrane N-Terminal Domains Results in SARS-CoV, SARS-CoV-2, and Influenza Virus Production Suppression in a Vero Cell Line.|pdf=|usr=}}
+{{tp|p=35558754|t=2022. Genetically Predicted Circulating Concentrations of Micronutrients and COVID-19 Susceptibility and Severity: A Mendelian Randomization Study.|pdf=|usr=}}
+{{tp|p=33898353|t=2021. Case Report: Inflammation and Endothelial Injury Profiling of COVID-19 Pediatric Multisystem Inflammatory Syndrome (MIS-C).|pdf=|usr=}}
+{{tp|p=32581799|t=2020. Molecular Insights Into SARS COV-2 Interaction With Cardiovascular Disease: Role of RAAS and MAPK Signaling.|pdf=|usr=}}
+{{tp|p=33584343|t=2021. Pathogenesis of Multiple Organ Injury in COVID-19 and Potential Therapeutic Strategies.|pdf=|usr=}}
+{{tp|p=33574769|t=2021. Targeting Endolysosomal Two-Pore Channels to Treat Cardiovascular Disorders in the Novel COronaVIrus Disease 2019.|pdf=|usr=}}
+{{tp|p=32694201|t=2020. Distinct conformational states of SARS-CoV-2 spike protein.|pdf=|usr=}}
+{{tp|p=32703906|t=2020. Structure-based design of prefusion-stabilized SARS-CoV-2 spikes.|pdf=|usr=}}
+{{tp|p=32763915|t=2020. A molecular pore spans the double membrane of the coronavirus replication organelle.|pdf=|usr=}}
+{{tp|p=32817270|t=2020. In situ structural analysis of SARS-CoV-2 spike reveals flexibility mediated by three hinges.|pdf=|usr=}}
+{{tp|p=32958580|t=2020. Free fatty acid binding pocket in the locked structure of SARS-CoV-2 spike protein.|pdf=|usr=}}
+{{tp|p=32972994|t=2020. Ultrapotent human antibodies protect against SARS-CoV-2 challenge via multiple mechanisms.|pdf=|usr=}}
+{{tp|p=32691370|t=2021. SARS-CoV-2 Entry Receptor ACE2 Is Expressed on Very Small CD45(-) Precursors of Hematopoietic and Endothelial Cells and in Response to Virus Spike Protein Activates the Nlrp3 Inflammasome.|pdf=|usr=}}
+{{tp|p=32355638|t=2020. Editorial: Nicotine and SARS-CoV-2: COVID-19 may be a disease of the nicotinic cholinergic system.|pdf=|usr=}}
+{{tp|p=34629295|t=2021. Differential roles of interferons in innate responses to mucosal viral infections.|pdf=|usr=}}
+{{tp|p=33233531|t=2020. Immunogenetic Association Underlying Severe COVID-19.|pdf=|usr=}}
+{{tp|p=34051372|t=2021. Crosstalk of TLR4, vascular NADPH oxidase, and COVID-19 in diabetes: What are the potential implications?|pdf=|usr=}}
+{{tp|p=33422689|t=2021. Endothelial cells and SARS-CoV-2: An intimate relationship.|pdf=|usr=}}
+{{tp|p=33232769|t=2021. SARS-CoV-2 spike protein-mediated cell signaling in lung vascular cells.|pdf=|usr=}}
+{{tp|p=35234623|t=2022. Characterization of two SARS-CoV-2 subgenomic RNA dynamics in severe COVID-19 patients.|pdf=|usr=}}
+{{tp|p=33660566|t=2021. Host Defence RNases as Antiviral Agents against Enveloped Single Stranded RNA Viruses.|pdf=|usr=}}
+{{tp|p=33842674|t=2021. In silico approach to understand the epigenetic mechanism of SARS-CoV-2 and its impact on the environment.|pdf=|usr=}}
+{{tp|p=35632627|t=2022. Ubiquitous Micro-Modular Homologies among Genomes from Viruses to Bacteria to Human Mitochondrial DNA: Platforms for Recombination during Evolution?|pdf=|usr=}}
+{{tp|p=34064525|t=2021. Identification of the SHREK Family of Proteins as Broad-Spectrum Host Antiviral Factors.|pdf=|usr=}}
+{{tp|p=33808906|t=2021. Profiles of Peripheral Immune Cells of Uncomplicated COVID-19 Cases with Distinct Viral RNA Shedding Periods.|pdf=|usr=}}
+{{tp|p=33466921|t=2021. Domains and Functions of Spike Protein in Sars-Cov-2 in the Context of Vaccine Design.|pdf=|usr=}}
+{{tp|p=33396605|t=2020. SARS-CoV-2 Nucleocapsid Protein Interacts with RIG-I and Represses RIG-Mediated IFN-beta Production.|pdf=|usr=}}
+{{tp|p=34168732|t=2021. New perspectives on angiotensin-converting enzyme 2 and its related diseases.|pdf=|usr=}}
+{{tp|p=34367930|t=2021. Hypotheses and facts for genetic factors related to severe COVID-19.|pdf=|usr=}}
+{{tp|p=33998180|t=2021. Particulate matter exposure exacerbates susceptibility to SARS-CoV-2 infection in humanized ACE2 mice.|pdf=|usr=}}
+{{tp|p=33178034|t=2020. Potential Role of Autonomic Dysfunction in Covid-19 Morbidity and Mortality.|pdf=|usr=}}
+{{tp|p=33220345|t=2021. Essential functional molecules associated with SARS-CoV-2 infection: Potential therapeutic targets for COVID-19.|pdf=|usr=}}
+{{tp|p=34175388|t=2021. Variants in AGTR2 gene in Maya people with COVID-19.|pdf=|usr=}}
+{{tp|p=34778602|t=2021. Immunopathology and Immunopathogenesis of COVID-19, what we know and what we should learn.|pdf=|usr=}}
+{{tp|p=34073716|t=2021. Genome-Scale Metabolic Model of Infection with SARS-CoV-2 Mutants Confirms Guanylate Kinase as Robust Potential Antiviral Target.|pdf=|usr=}}
+{{tp|p=32884603|t=2020. Mutagenic, Genotoxic and Immunomodulatory effects of Hydroxychloroquine and Chloroquine: a review to evaluate its potential to use as a prophylactic drug against COVID-19.|pdf=|usr=}}
+{{tp|p=33788636|t=2021. A study on non-synonymous mutational patterns in structural proteins of SARS-CoV-2.|pdf=|usr=}}
+{{tp|p=34425859|t=2021. Integrative approach identifies SLC6A20 and CXCR6 as putative causal genes for the COVID-19 GWAS signal in the 3p21.31 locus.|pdf=|usr=}}
+{{tp|p=35529075|t=2022. Wildfire-Induced Pollution and its Short-Term Impact on COVID-19 Cases and Mortality in California.|pdf=|usr=}}
+{{tp|p=32844126|t=2020. Leptin levels in SARS-CoV-2 infection related respiratory failure: A cross-sectional study and a pathophysiological framework on the role of fat tissue.|pdf=|usr=}}
+{{tp|p=35224516|t=2022. A year of COVID-19 GWAS results from the GRASP portal reveals potential genetic risk factors.|pdf=|usr=}}
+{{tp|p=32827207|t=2020. HLA allele frequencies and susceptibility to COVID-19 in a group of 99 Italian patients.|pdf=|usr=}}
+{{tp|p=34462158|t=2022. HLA repertoire of 115 UAE nationals infected with SARS-CoV-2.|pdf=|usr=}}
+{{tp|p=32750378|t=2020. A review of the main histopathological findings in coronavirus disease 2019.|pdf=|usr=}}
+{{tp|p=35065665|t=2022. What's happening where when SARS-CoV-2 infects: are TLR7 and MAFB sufficient to explain patient vulnerability?|pdf=|usr=}}
+{{tp|p=33425429|t=2020. Recent Insights into Cellular Crosstalk in Respiratory and Gastrointestinal Mucosal Immune Systems.|pdf=|usr=}}
+{{tp|p=34910934|t=2021. Antigenic drift: Understanding COVID-19.|pdf=|usr=}}
+{{tp|p=32433946|t=2020. Herd Immunity: Understanding COVID-19.|pdf=|usr=}}
+{{tp|p=34410575|t=2021. COVID-19: the CaMKII-like system of S protein drives membrane fusion and induces syncytial multinucleated giant cells.|pdf=|usr=}}
+{{tp|p=32658335|t=2020. The role of host genetics in the immune response to SARS-CoV-2 and COVID-19 susceptibility and severity.|pdf=|usr=}}
+{{tp|p=34001199|t=2021. Lung histopathological findings in COVID-19 disease - a systematic review.|pdf=|usr=}}
+{{tp|p=35109926|t=2022. Clinical and antibody characteristics reveal diverse signatures of severe and non-severe SARS-CoV-2 patients.|pdf=|usr=}}
+{{tp|p=34343725|t=2021. Circulating miRNAs: Potential diagnostic role for coronavirus disease 2019 (COVID-19).|pdf=|usr=}}
+{{tp|p=32737833|t=2020. Differences and similarities between SARS-CoV and SARS-CoV-2: spike receptor-binding domain recognition and host cell infection with support of cellular serine proteases.|pdf=|usr=}}
+{{tp|p=33079210|t=2021. Inflammasome formation in the lungs of patients with fatal COVID-19.|pdf=|usr=}}
+{{tp|p=33756225|t=2021. Landscape of SARS-CoV-2 spike protein-interacting cells in human tissues.|pdf=|usr=}}
+{{tp|p=33221169|t=2021. The emerging role of microRNAs in the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) infection.|pdf=|usr=}}
+{{tp|p=32738306|t=2020. In silico study of azithromycin, chloroquine and hydroxychloroquine and their potential mechanisms of action against SARS-CoV-2 infection.|pdf=|usr=}}
+{{tp|p=35563515|t=2022. Angiotensin II Promotes SARS-CoV-2 Infection via Upregulation of ACE2 in Human Bronchial Cells.|pdf=|usr=}}
+{{tp|p=35628409|t=2022. Structure-Based Development of SARS-CoV-2 Spike Interactors.|pdf=|usr=}}
+{{tp|p=35163504|t=2022. Time-Dependent Molecular Motifs of Pulmonary Fibrogenesis in COVID-19.|pdf=|usr=}}
+{{tp|p=35562935|t=2022. Immune Signature of COVID-19: In-Depth Reasons and Consequences of the Cytokine Storm.|pdf=|usr=}}
+{{tp|p=35456997|t=2022. Effects of SARS-CoV-2 Inflammation on Selected Organ Systems of the Human Body.|pdf=|usr=}}
+{{tp|p=34638539|t=2021. Severity of COVID-19 Patients Predicted by Serum Sphingolipids Signature.|pdf=|usr=}}
+{{tp|p=34069441|t=2021. Contribution of Syndecans to the Cellular Entry of SARS-CoV-2.|pdf=|usr=}}
+{{tp|p=33807854|t=2021. Population-Predicted MHC Class II Epitope Presentation of SARS-CoV-2 Structural Proteins Correlates to the Case Fatality Rates of COVID-19 in Different Countries.|pdf=|usr=}}
+{{tp|p=34209289|t=2021. Pathophysiology and Clinical Manifestations of COVID-19-Related Acute Kidney Injury-The Current State of Knowledge and Future Perspectives.|pdf=|usr=}}
+{{tp|p=34208755|t=2021. More Is Always Better Than One: The N-Terminal Domain of the Spike Protein as Another Emerging Target for Hampering the SARS-CoV-2 Attachment to Host Cells.|pdf=|usr=}}
+{{tp|p=34299201|t=2021. Problems of Pathogenesis and Pathogenetic Therapy of COVID-19 from the Perspective of the General Theory of Pathological Systems (General Pathological Processes).|pdf=|usr=}}
+{{tp|p=33668756|t=2021. Characterization of Critical Determinants of ACE2-SARS CoV-2 RBD Interaction.|pdf=|usr=}}
+{{tp|p=34502033|t=2021. Exploring the Binding Mechanism of PF-07321332 SARS-CoV-2 Protease Inhibitor through Molecular Dynamics and Binding Free Energy Simulations.|pdf=|usr=}}
+{{tp|p=33138181|t=2020. Emerging Mechanisms of Pulmonary Vasoconstriction in SARS-CoV-2-Induced Acute Respiratory Distress Syndrome (ARDS) and Potential Therapeutic Targets.|pdf=|usr=}}
+{{tp|p=32823591|t=2020. Nicotinic Cholinergic System and COVID-19: In Silico Identification of an Interaction between SARS-CoV-2 and Nicotinic Receptors with Potential Therapeutic Targeting Implications.|pdf=|usr=}}
+{{tp|p=33284413|t=2020. Endotoxemia and circulating bacteriome in severe COVID-19 patients.|pdf=|usr=}}
+{{tp|p=34540148|t=2021. Bioinformatic analysis of the whole genome sequences of SARS-CoV-2 from Indonesia.|pdf=|usr=}}
+{{tp|p=34957382|t=2022. Integrated miRNA/cytokine/chemokine profiling reveals severity-associated step changes and principal correlates of fatality in COVID-19.|pdf=|usr=}}
+{{tp|p=33585805|t=2021. Quantitative assays reveal cell fusion at minimal levels of SARS-CoV-2 spike protein and fusion from without.|pdf=|usr=}}
+{{tp|p=33997662|t=2021. Energetic and structural features of SARS-CoV-2 N-protein co-assemblies with nucleic acids.|pdf=|usr=}}
+{{tp|p=34189428|t=2021. ACE2 interaction with cytoplasmic PDZ protein enhances SARS-CoV-2 invasion.|pdf=|usr=}}
+{{tp|p=34179733|t=2021. Multi-dimensional and longitudinal systems profiling reveals predictive pattern of severe COVID-19.|pdf=|usr=}}
+{{tp|p=34308276|t=2021. Sensor array and gas chromatographic detection of the blood serum volatolomic signature of COVID-19.|pdf=|usr=}}
+{{tp|p=33015593|t=2020. Mitochondria: In the Cross Fire of SARS-CoV-2 and Immunity.|pdf=|usr=}}
+{{tp|p=34467628|t=2021. Mast cells: Therapeutic targets for COVID-19 and beyond.|pdf=|usr=}}
+{{tp|p=33960608|t=2021. Glucose-regulated protein (GRP78) is an important cell surface receptor for viral invasion, cancers, and neurological disorders.|pdf=|usr=}}
+{{tp|p=34614039|t=2021. virusMED: an atlas of hotspots of viral proteins.|pdf=|usr=}}
+{{tp|p=35157798|t=2022. Strikingly Different Roles of SARS-CoV-2 Fusion Peptides Uncovered by Neutron Scattering.|pdf=|usr=}}
+{{tp|p=34039006|t=2021. Conformational Ensembles of Noncoding Elements in the SARS-CoV-2 Genome from Molecular Dynamics Simulations.|pdf=|usr=}}
+{{tp|p=34270232|t=2021. Free Energy Landscapes from SARS-CoV-2 Spike Glycoprotein Simulations Suggest that RBD Opening Can Be Modulated via Interactions in an Allosteric Pocket.|pdf=|usr=}}
+{{tp|p=33051359|t=2020. Does SARS-CoV-2 Infect the Kidney?|pdf=|usr=}}
+{{tp|p=33703942|t=2021. The invention of hypoxia.|pdf=|usr=}}
+{{tp|p=35278433|t=2022. Prefusion spike protein conformational changes are slower in SARS-CoV-2 than in SARS-CoV-1.|pdf=|usr=}}
+{{tp|p=34214498|t=2021. Famotidine inhibits toll-like receptor 3-mediated inflammatory signaling in SARS-CoV-2 infection.|pdf=|usr=}}
+{{tp|p=32675285|t=2020. Intracellular autoactivation of TMPRSS11A, an airway epithelial transmembrane serine protease.|pdf=|usr=}}
+{{tp|p=32917722|t=2020. Sphingosine prevents binding of SARS-CoV-2 spike to its cellular receptor ACE2.|pdf=|usr=}}
+{{tp|p=33122196|t=2020. High affinity binding of SARS-CoV-2 spike protein enhances ACE2 carboxypeptidase activity.|pdf=|usr=}}
+{{tp|p=33963094|t=2021. SARS-CoV-2 encoded microRNAs are involved in the process of virus infection and host immune response.|pdf=|usr=}}
+{{tp|p=34098950|t=2021. Identification of COVID-19 B-cell epitopes with phage-displayed peptide library.|pdf=|usr=}}
+{{tp|p=34275487|t=2021. The Infectious Disease Ontology in the age of COVID-19.|pdf=|usr=}}
+{{tp|p=34741481|t=2022. Understanding the binding mechanism for potential inhibition of SARS-CoV-2 Mpro and exploring the modes of ACE2 inhibition by hydroxychloroquine.|pdf=|usr=}}
+{{tp|p=32725137|t=2020. Role of the early secretory pathway in SARS-CoV-2 infection.|pdf=|usr=}}
+{{tp|p=32785687|t=2020. Crippling life support for SARS-CoV-2 and other viruses through synthetic lethality.|pdf=|usr=}}
+{{tp|p=32895779|t=2020. Coronavirus: a shift in focus away from IFN response and towards other inflammatory targets.|pdf=|usr=}}
+{{tp|p=32542735|t=2021. An updated review of the association of host genetic factors with susceptibility and resistance to COVID-19.|pdf=|usr=}}
+{{tp|p=33468620|t=2021. Ipomoeassin-F inhibits the in vitro biogenesis of the SARS-CoV-2 spike protein and its host cell membrane receptor.|pdf=|usr=}}
+{{tp|p=34156227|t=2021. Anchor-Locker Binding Mechanism of the Coronavirus Spike Protein to Human ACE2: Insights from Computational Analysis.|pdf=|usr=}}
+{{tp|p=33492309|t=2021. Functional monocytic myeloid-derived suppressor cells increase in blood but not airways and predict COVID-19 severity.|pdf=|usr=}}
+{{tp|p=32422996|t=2020. Highly Conserved Homotrimer Cavity Formed by the SARS-CoV-2 Spike Glycoprotein: A Novel Binding Site.|pdf=|usr=}}
+{{tp|p=32918236|t=2020. An online repository of solvation thermodynamic and structural maps of SARS-CoV-2 targets.|pdf=|usr=}}
+{{tp|p=34074197|t=2021. Is carbonic anhydrase inhibition useful as a complementary therapy of Covid-19 infection?|pdf=|usr=}}
+{{tp|p=34757384|t=2022. A stem-loop RNA RIG-I agonist protects against acute and chronic SARS-CoV-2 infection in mice.|pdf=|usr=}}
+{{tp|p=34357402|t=2021. Early nasal type I IFN immunity against SARS-CoV-2 is compromised in patients with autoantibodies against type I IFNs.|pdf=|usr=}}
+{{tp|p=33646265|t=2021. Highly functional virus-specific cellular immune response in asymptomatic SARS-CoV-2 infection.|pdf=|usr=}}
+{{tp|p=35574251|t=2022. Serum extracellular vesicles profiling is associated with COVID-19 progression and immune responses.|pdf=|usr=}}
+{{tp|p=34982509|t=2022. Engineered small extracellular vesicles displaying ACE2 variants on the surface protect against SARS-CoV-2 infection.|pdf=|usr=}}
+{{tp|p=34874124|t=2021. Millisecond dynamic of SARS-CoV-2 spike and its interaction with ACE2 receptor and small extracellular vesicles.|pdf=|usr=}}
+{{tp|p=32568027|t=2020. SARS-coronavirus-2 replication in Vero E6 cells: replication kinetics, rapid adaptation and cytopathology.|pdf=|usr=}}
+{{tp|p=32579100|t=2020. Insights into SARS-CoV-2, the Coronavirus Underlying COVID-19: Recent Genomic Data and the Development of Reverse Genetics Systems.|pdf=|usr=}}
+{{tp|p=33242672|t=2021. Cytokine storm of a different flavour: The different cytokine signature of SARS-CoV-2, the cause of COVID-19, from the original SARS outbreak.|pdf=|usr=}}
+{{tp|p=34616852|t=2021. Inhaled [D-Ala(2)]-Dynorphin 1-6 Prevents Hyperacetylation and Release of High Mobility Group Box 1 in a Mouse Model of Acute Lung Injury.|pdf=|usr=}}
+{{tp|p=33299899|t=2020. Potential Therapeutic Role of Purinergic Receptors in Cardiovascular Disease Mediated by SARS-CoV-2.|pdf=|usr=}}
+{{tp|p=33337934|t=2020. Antagonism of Type I Interferon by Severe Acute Respiratory Syndrome Coronavirus 2.|pdf=|usr=}}
+{{tp|p=34467562|t=2022. Scientific premise for the involvement of neutrophil extracellular traps (NETs) in vaccine-induced thrombotic thrombocytopenia (VITT).|pdf=|usr=}}
+{{tp|p=35324008|t=2022. Reverse genetics systems for SARS-CoV-2.|pdf=|usr=}}
+{{tp|p=33205830|t=2021. Coronapp: A web application to annotate and monitor SARS-CoV-2 mutations.|pdf=|usr=}}
+{{tp|p=32374457|t=2020. The anti-HIV drug nelfinavir mesylate (Viracept) is a potent inhibitor of cell fusion caused by the SARSCoV-2 spike (S) glycoprotein warranting further evaluation as an antiviral against COVID-19 infections.|pdf=|usr=}}
+{{tp|p=34350099|t=2021. An Overview of the Perspective of Cellular Autophagy: Mechanism, Regulation, and the Role of Autophagy Dysregulation in the Pathogenesis of Diseases.|pdf=|usr=}}
+{{tp|p=34780781|t=2022. Disulfide Bonds Play a Critical Role in the Structure and Function of the Receptor-binding Domain of the SARS-CoV-2 Spike Antigen.|pdf=|usr=}}
+{{tp|p=32422320|t=2020. p38 MAPK inhibition: A promising therapeutic approach for COVID-19.|pdf=|usr=}}
+{{tp|p=35362781|t=2022. The Possible Role of Prion-Like Viral Protein Domains on the Emergence of Novel Viruses as SARS-CoV-2.|pdf=|usr=}}
+{{tp|p=33099199|t=2021. Exploring the intrinsic dynamics of SARS-CoV-2, SARS-CoV and MERS-CoV spike glycoprotein through normal mode analysis using anisotropic network model.|pdf=|usr=}}
+{{tp|p=34619427|t=2021. The microglial NLRP3 inflammasome is involved in human SARS-CoV-2 cerebral pathogenicity: A report of three post-mortem cases.|pdf=|usr=}}
+{{tp|p=33586189|t=2021. COVID-19: immunopathology, pathophysiological mechanisms, and treatment options.|pdf=|usr=}}
+{{tp|p=32418199|t=2020. Angiotensin-converting enzyme 2 (ACE2), SARS-CoV-2 and the pathophysiology of coronavirus disease 2019 (COVID-19).|pdf=|usr=}}
+{{tp|p=34196568|t=2021. Interfacial Water Many-Body Effects Drive Structural Dynamics and Allosteric Interactions in SARS-CoV-2 Main Protease Dimerization Interface.|pdf=|usr=}}
+{{tp|p=34196550|t=2021. Regulation Mechanism for the Binding between the SARS-CoV-2 Spike Protein and Host Angiotensin-Converting Enzyme II.|pdf=|usr=}}
+{{tp|p=32787330|t=2020. Dynamic Asymmetry Exposes 2019-nCoV Prefusion Spike.|pdf=|usr=}}
+{{tp|p=33085491|t=2020. Thermodynamics of the Interaction between the Spike Protein of Severe Acute Respiratory Syndrome Coronavirus-2 and the Receptor of Human Angiotensin-Converting Enzyme 2. Effects of Possible Ligands.|pdf=|usr=}}
+{{tp|p=33274945|t=2020. Computational Insights into the Conformational Accessibility and Binding Strength of SARS-CoV-2 Spike Protein to Human Angiotensin-Converting Enzyme 2.|pdf=|usr=}}
+{{tp|p=33269932|t=2020. Molecular Dynamics Reveals Complex Compensatory Effects of Ionic Strength on the Severe Acute Respiratory Syndrome Coronavirus 2 Spike/Human Angiotensin-Converting Enzyme 2 Interaction.|pdf=|usr=}}
+{{tp|p=33662570|t=2021. Spike protein fusion loop controls SARS-CoV-2 fusogenicity and infectivity.|pdf=|usr=}}
+{{tp|p=32919067|t=2020. A graph-based approach identifies dynamic H-bond communication networks in spike protein S of SARS-CoV-2.|pdf=|usr=}}
+{{tp|p=35490763|t=2022. Distinguishing viruses responsible for influenza-like illness.|pdf=|usr=}}
+{{tp|p=34478743|t=2021. Inverted repeats in coronavirus SARS-CoV-2 genome manifest the evolution events.|pdf=|usr=}}
+{{tp|p=32627126|t=2020. COVID-19: Are we dealing with a multisystem vasculopathy in disguise of a viral infection?|pdf=|usr=}}
+{{tp|p=34174875|t=2021. Exploratory analysis to identify the best antigen and the best immune biomarkers to study SARS-CoV-2 infection.|pdf=|usr=}}
+{{tp|p=32746922|t=2020. A consideration of publication-derived immune-related associations in Coronavirus and related lung damaging diseases.|pdf=|usr=}}
+{{tp|p=32427773|t=2020. Rescue therapy for severe COVID-19-associated acute respiratory distress syndrome with tissue plasminogen activator: A case series.|pdf=|usr=}}
+{{tp|p=34669512|t=2022. Functional Effects of Cardiomyocyte Injury in COVID-19.|pdf=|usr=}}
+{{tp|p=33257477|t=2021. A Versatile Reporter System To Monitor Virus-Infected Cells and Its Application to Dengue Virus and SARS-CoV-2.|pdf=|usr=}}
+{{tp|p=33158944|t=2021. The SARS-CoV-2 Conserved Macrodomain Is a Mono-ADP-Ribosylhydrolase.|pdf=|usr=}}
+{{tp|p=33637603|t=2021. SARS-CoV-2 causes severe epithelial inflammation and barrier dysfunction.|pdf=|usr=}}
+{{tp|p=33627397|t=2021. Potential differences in cleavage of the S protein and type-1 interferon together control human coronavirus infection, propagation, and neuropathology within the central nervous system.|pdf=|usr=}}
+{{tp|p=32434888|t=2020. Replication of Severe Acute Respiratory Syndrome Coronavirus 2 in Human Respiratory Epithelium.|pdf=|usr=}}
+{{tp|p=32404529|t=2020. Comparison of Severe Acute Respiratory Syndrome Coronavirus 2 Spike Protein Binding to ACE2 Receptors from Human, Pets, Farm Animals, and Putative Intermediate Hosts.|pdf=|usr=}}
+{{tp|p=33835761|t=2021. CRISPR/Cas: a Nobel Prize award-winning precise genome editing technology for gene therapy and crop improvement.|pdf=|usr=}}
+{{tp|p=32425000|t=2020. An overview of COVID-19.|pdf=|usr=}}
+{{tp|p=33681537|t=2021. SARS-CoV-2 Infects Human Engineered Heart Tissues and Models COVID-19 Myocarditis.|pdf=|usr=}}
+{{tp|p=35608920|t=2022. Fatal COVID-19 outcomes are associated with an antibody response targeting epitopes shared with endemic coronaviruses.|pdf=|usr=}}
+{{tp|p=35133984|t=2022. Disulfiram inhibits neutrophil extracellular trap formation and protects rodents from acute lung injury and SARS-CoV-2 infection.|pdf=|usr=}}
+{{tp|p=34357881|t=2021. Ex vivo SARS-CoV-2 infection of human lung reveals heterogeneous host defense and therapeutic responses.|pdf=|usr=}}
+{{tp|p=34747367|t=2021. Chitinase 3-like-1 is a therapeutic target that mediates the effects of aging in COVID-19.|pdf=|usr=}}
+{{tp|p=35368365|t=2021. Expression of ACE2 in the Intact and Acutely Injured Kidney.|pdf=|usr=}}
+{{tp|p=34766101|t=2021. Urinary peptidomic profiles to address age-related disabilities: a prospective population study.|pdf=|usr=}}
+{{tp|p=34562356|t=2021. Liberating host-virus knowledge from biological dark data.|pdf=|usr=}}
+{{tp|p=34575070|t=2021. Genomic and Ancestral Variation Underlies the Severity of COVID-19 Clinical Manifestation in Individuals of European Descent.|pdf=|usr=}}
+{{tp|p=33170317|t=2020. ACE2: The Major Cell Entry Receptor for SARS-CoV-2.|pdf=|usr=}}
+{{tp|p=33907732|t=2021. Nanotraps for the containment and clearance of SARS-CoV-2.|pdf=|usr=}}
+{{tp|p=33531391|t=2021. MMR Vaccine and COVID-19: Measles Protein Homology May Contribute to Cross-Reactivity or to Complement Activation Protection.|pdf=|usr=}}
+{{tp|p=32471829|t=2020. Novel Immunoglobulin Domain Proteins Provide Insights into Evolution and Pathogenesis of SARS-CoV-2-Related Viruses.|pdf=|usr=}}
+{{tp|p=34149046|t=2021. Editorial: Revised World Health Organization (WHO) Terminology for Variants of Concern and Variants of Interest of SARS-CoV-2.|pdf=|usr=}}
+{{tp|p=35262093|t=2022. Multicenter analysis of neutrophil extracellular trap dysregulation in adult and pediatric COVID-19.|pdf=|usr=}}
+{{tp|p=35018385|t=2022. Integrin/TGF-beta1 inhibitor GLPG-0187 blocks SARS-CoV-2 Delta and Omicron pseudovirus infection of airway epithelial cells which could attenuate disease severity.|pdf=|usr=}}
+{{tp|p=34401886|t=2021. Neuro-COVID long-haulers exhibit broad dysfunction in T cell memory generation and responses to vaccination.|pdf=|usr=}}
+{{tp|p=34642702|t=2021. A Phenome-Wide Association Study of genes associated with COVID-19 severity reveals shared genetics with complex diseases in the Million Veteran Program.|pdf=|usr=}}
+{{tp|p=34031665|t=2021. Tie2 activation protects against prothrombotic endothelial dysfunction in COVID-19.|pdf=|usr=}}
+{{tp|p=34013287|t=2021. Insights into genetic factors contributing to variability in SARS-CoV-2 susceptibility and COVID-19 disease severity.|pdf=|usr=}}
+{{tp|p=33688686|t=2021. IL-13 is a driver of COVID-19 severity.|pdf=|usr=}}
+{{tp|p=34268522|t=2021. Decoding Clinical Biomarker Space of COVID-19: Exploring Matrix Factorization-based Feature Selection Methods.|pdf=|usr=}}
+{{tp|p=33655273|t=2021. A catalog of associations between rare coding variants and COVID-19 outcomes.|pdf=|usr=}}
+{{tp|p=33880488|t=2021. Integrative approach identifies SLC6A20 and CXCR6 as putative causal genes for the COVID-19 GWAS signal in the 3p21.31 locus.|pdf=|usr=}}
+{{tp|p=32869043|t=2020. The unintended consequences of inconsistent pandemic control policies.|pdf=|usr=}}
+{{tp|p=33200144|t=2020. Genetic variants are identified to increase risk of COVID-19 related mortality from UK Biobank data.|pdf=|usr=}}
+{{tp|p=33269361|t=2020. Cytokine ranking via mutual information algorithm correlates cytokine profiles with presenting disease severity in patients with COVID-19.|pdf=|usr=}}
+{{tp|p=32511639|t=2020. A single-cell atlas of the peripheral immune response to severe COVID-19.|pdf=|usr=}}
+{{tp|p=33349792|t=2021. Essential interpretations of bioinformatics in COVID-19 pandemic.|pdf=|usr=}}
+{{tp|p=35381232|t=2022. Machine learning and semi-targeted lipidomics identify distinct serum lipid signatures in hospitalized COVID-19-positive and COVID-19-negative patients.|pdf=|usr=}}
+{{tp|p=34357361|t=2021. Diagnostic Potential of the Plasma Lipidome in Infectious Disease: Application to Acute SARS-CoV-2 Infection.|pdf=|usr=}}
+{{tp|p=33881539|t=2021. Chemistry and biology of ferritin.|pdf=|usr=}}
+{{tp|p=34547443|t=2022. Characterisation of SARS-CoV-2 clades based on signature SNPs unveils continuous evolution.|pdf=|usr=}}
+{{tp|p=34029715|t=2021. COVID-19 related interdisciplinary methods: Preventing errors and detecting research opportunities.|pdf=|usr=}}
+{{tp|p=34738157|t=2021. Comparative Host-Pathogen Interaction Analyses of SARS-CoV2 and Aspergillus fumigatus, and Pathogenesis of COVID-19-Associated Aspergillosis.|pdf=|usr=}}
+{{tp|p=34870573|t=2021. SARS-CoV-2 genetic variations associated with COVID-19 pathogenicity.|pdf=|usr=}}
+{{tp|p=34861346|t=2022. Machine learning based predictive model and systems-level network of host-microbe interactions in post-COVID-19 mucormycosis.|pdf=|usr=}}
+{{tp|p=33373693|t=2021. Spike glycoproteins: Their significance for corona viruses and receptor binding activities for pathogenesis and viral survival.|pdf=|usr=}}
+{{tp|p=34192695|t=2022. CRISPR-Cas System: The Powerful Modulator of Accessory Genomes in Prokaryotes.|pdf=|usr=}}
+{{tp|p=35234489|t=2022. VPipe: an Automated Bioinformatics Platform for Assembly and Management of Viral Next-Generation Sequencing Data.|pdf=|usr=}}
+{{tp|p=34787497|t=2021. SARS-CoV-2 Variants and Their Relevant Mutational Profiles: Update Summer 2021.|pdf=|usr=}}
+{{tp|p=35194246|t=2022. Genetic Engineering Systems to Study Human Viral Pathogens from the Coronaviridae Family.|pdf=|usr=}}
+{{tp|p=34638137|t=2022. The Neighborhood of the Spike Gene Is a Hotspot for Modular Intertypic Homologous and Nonhomologous Recombination in Coronavirus Genomes.|pdf=|usr=}}
+{{tp|p=33585889|t=2021. Global Patterns of Recombination across Human Viruses.|pdf=|usr=}}
+{{tp|p=32289821|t=2020. Extreme Genomic CpG Deficiency in SARS-CoV-2 and Evasion of Host Antiviral Defense.|pdf=|usr=}}
+{{tp|p=35596055|t=2022. A comprehensive review on current understanding of bradykinin in COVID-19 and inflammatory diseases.|pdf=|usr=}}
+{{tp|p=35594856|t=2022. Human NLRP1 is a sensor of pathogenic coronavirus 3CL proteases in lung epithelial cells.|pdf=|usr=}}
+{{tp|p=33743061|t=2021. Host-dependent molecular factors mediating SARS-CoV-2 infection to gain clinical insights for developing effective targeted therapy.|pdf=|usr=}}
+{{tp|p=34608263|t=2022. The acid sphingomyelinase/ceramide system in COVID-19.|pdf=|usr=}}
+{{tp|p=34385600|t=2021. Repurposing antidepressants inhibiting the sphingomyelinase acid/ceramide system against COVID-19: current evidence and potential mechanisms.|pdf=|usr=}}
+{{tp|p=34487431|t=2021. Tensor-structured decomposition improves systems serology analysis.|pdf=|usr=}}
+{{tp|p=35408447|t=2022. Angiotensin II Type I Receptor (AT1R): The Gate towards COVID-19-Associated Diseases.|pdf=|usr=}}
+{{tp|p=35163948|t=2022. DrugDevCovid19: An Atlas of Anti-COVID-19 Compounds Derived by Computer-Aided Drug Design.|pdf=|usr=}}
+{{tp|p=34500777|t=2021. Discrimination of Methionine Sulfoxide and Sulfone by Human Neutrophil Elastase.|pdf=|usr=}}
+{{tp|p=33437534|t=2020. Angstrom- and Nano-scale Pore-Based Nucleic Acid Sequencing of Current and Emergent Pathogens.|pdf=|usr=}}
+{{tp|p=34313463|t=2021. Pathophysiology of SARS-CoV-2 Infection in the Upper Respiratory Tract and Its Relation to Breath Volatile Organic Compounds.|pdf=|usr=}}
+{{tp|p=34542296|t=2021. Detection of SARS-CoV-2 with Solid-State CRISPR-Cas12a-Assisted Nanopores.|pdf=|usr=}}
+{{tp|p=33391623|t=2020. Manganese nanodepot augments host immune response against coronavirus.|pdf=|usr=}}
+{{tp|p=34632381|t=2021. OnTheFly(2.0): a text-mining web application for automated biomedical entity recognition, document annotation, network and functional enrichment analysis.|pdf=|usr=}}
+{{tp|p=35508460|t=2022. Identification of DAXX as a restriction factor of SARS-CoV-2 through a CRISPR/Cas9 screen.|pdf=|usr=}}
+{{tp|p=35246509|t=2022. Evolution of the SARS-CoV-2 spike protein in the human host.|pdf=|usr=}}
+{{tp|p=35236847|t=2022. Secondary structural ensembles of the SARS-CoV-2 RNA genome in infected cells.|pdf=|usr=}}
+{{tp|p=35301316|t=2022. RNA G-quadruplex in TMPRSS2 reduces SARS-CoV-2 infection.|pdf=|usr=}}
+{{tp|p=35078982|t=2022. Immunoglobulin signature predicts risk of post-acute COVID-19 syndrome.|pdf=|usr=}}
+{{tp|p=35058437|t=2022. Circulating ACE2-expressing extracellular vesicles block broad strains of SARS-CoV-2.|pdf=|usr=}}
+{{tp|p=35017512|t=2022. Structural insights in cell-type specific evolution of intra-host diversity by SARS-CoV-2.|pdf=|usr=}}
+{{tp|p=35194049|t=2022. Cooperative multivalent receptor binding promotes exposure of the SARS-CoV-2 fusion machinery core.|pdf=|usr=}}
+{{tp|p=33990585|t=2021. Crystal structure of SARS-CoV-2 Orf9b in complex with human TOM70 suggests unusual virus-host interactions.|pdf=|usr=}}
+{{tp|p=33782395|t=2021. The SARS-CoV-2 nucleocapsid protein is dynamic, disordered, and phase separates with RNA.|pdf=|usr=}}
+{{tp|p=34103506|t=2021. Structural basis for SARS-CoV-2 envelope protein recognition of human cell junction protein PALS1.|pdf=|usr=}}
+{{tp|p=34099703|t=2021. Assessment of protein-protein interfaces in cryo-EM derived assemblies.|pdf=|usr=}}
+{{tp|p=34168138|t=2021. The architecture of the SARS-CoV-2 RNA genome inside virion.|pdf=|usr=}}
+{{tp|p=34226537|t=2021. Monocyte-driven atypical cytokine storm and aberrant neutrophil activation as key mediators of COVID-19 disease severity.|pdf=|usr=}}
+{{tp|p=33479198|t=2021. The SARS-CoV-2 nucleocapsid phosphoprotein forms mutually exclusive condensates with RNA and the membrane-associated M protein.|pdf=|usr=}}
+{{tp|p=33431842|t=2021. Stabilizing the closed SARS-CoV-2 spike trimer.|pdf=|usr=}}
+{{tp|p=33087721|t=2020. Antibody-mediated disruption of the SARS-CoV-2 spike glycoprotein.|pdf=|usr=}}
+{{tp|p=32733001|t=2020. Activation and evasion of type I interferon responses by SARS-CoV-2.|pdf=|usr=}}
+{{tp|p=32709887|t=2020. Structural analysis of the SARS-CoV-2 methyltransferase complex involved in RNA cap creation bound to sinefungin.|pdf=|usr=}}
+{{tp|p=35042228|t=2022. Ancestral SARS-CoV-2-specific T cells cross-recognize the Omicron variant.|pdf=|usr=}}
+{{tp|p=33589825|t=2021. Humoral signatures of protective and pathological SARS-CoV-2 infection in children.|pdf=|usr=}}
+{{tp|p=33727702|t=2021. ISG15-dependent activation of the sensor MDA5 is antagonized by the SARS-CoV-2 papain-like protease to evade host innate immunity.|pdf=|usr=}}
+{{tp|p=32669681|t=2020. A dynamic nomenclature proposal for SARS-CoV-2 lineages to assist genomic epidemiology.|pdf=|usr=}}
+{{tp|p=32341570|t=2020. The new scope of virus taxonomy: partitioning the virosphere into 15 hierarchical ranks.|pdf=|usr=}}
+{{tp|p=33514944|t=2021. Engineering SARS-CoV-2 using a reverse genetic system.|pdf=|usr=}}
+{{tp|p=33824489|t=2021. Emerging concepts in the science of vaccine adjuvants.|pdf=|usr=}}
+{{tp|p=33824483|t=2021. Endothelial dysfunction and immunothrombosis as key pathogenic mechanisms in COVID-19.|pdf=|usr=}}
+{{tp|p=33214719|t=2021. Leukocyte trafficking to the lungs and beyond: lessons from influenza for COVID-19.|pdf=|usr=}}
+{{tp|p=32355328|t=2020. Impaired interferon signature in severe COVID-19.|pdf=|usr=}}
+{{tp|p=32606379|t=2020. The network effect: studying COVID-19 pathology with the Human Cell Atlas.|pdf=|usr=}}
+{{tp|p=32737467|t=2020. A thermostable, closed SARS-CoV-2 spike protein trimer.|pdf=|usr=}}
+{{tp|p=32699321|t=2020. Controlling the SARS-CoV-2 spike glycoprotein conformation.|pdf=|usr=}}
+{{tp|p=32225175|t=2020. Structural basis of receptor recognition by SARS-CoV-2.|pdf=|usr=}}
+{{tp|p=32015507|t=2020. A pneumonia outbreak associated with a new coronavirus of probable bat origin.|pdf=|usr=}}
+{{tp|p=34780863|t=2021. SARS-CoV-2 deregulates the vascular and immune functions of brain pericytes via Spike protein.|pdf=|usr=}}
+{{tp|p=33053430|t=2020. The SARS-CoV-2 spike protein alters barrier function in 2D static and 3D microfluidic in-vitro models of the human blood-brain barrier.|pdf=|usr=}}
+{{tp|p=32532983|t=2020. Advice from a systems-biology model of the corona epidemics.|pdf=|usr=}}
+{{tp|p=34747468|t=2022. HumanNet v3: an improved database of human gene networks for disease research.|pdf=|usr=}}
+{{tp|p=34643704|t=2022. ESC: a comprehensive resource for SARS-CoV-2 immune escape variants.|pdf=|usr=}}
--to be shown-
+{{tp|p=34933561|t=2022. The Inhibition of SARS-CoV-2 3CL M(pro) by Graphene and Its Derivatives from Molecular Dynamics Simulations.|pdf=|usr=}}
+{{tp|p=34928574|t=2022. Spike Protein and the Various Cell-Surface Carbohydrates: An Interaction Study.|pdf=|usr=}}
+{{tp|p=34792325|t=2021. Clinical Antiviral Drug Arbidol Inhibits Infection by SARS-CoV-2 and Variants through Direct Binding to the Spike Protein.|pdf=|usr=}}
+{{tp|p=32348111|t=2020. Is the Collapse of the Respiratory Center in the Brain Responsible for Respiratory Breakdown in COVID-19 Patients?|pdf=|usr=}}
+{{tp|p=34396420|t=2021. Type I Interferon Signature in Chilblains Following SARS-CoV-2 mRNA Vaccine: A Case Report.|pdf=|usr=}}
+{{tp|p=35105380|t=2022. Neutrophils predominate the immune signature of cerebral thrombi in COVID-19 stroke patients.|pdf=|usr=}}
+{{tp|p=35251918|t=2022. Suppressing fatty acid synthase by type I interferon and chemical inhibitors as a broad spectrum anti-viral strategy against SARS-CoV-2.|pdf=|usr=}}
+{{tp|p=32895623|t=2021. Crystal structure of SARS-CoV-2 papain-like protease.|pdf=|usr=}}
+{{tp|p=32223077|t=2020. Neuroinfection may contribute to pathophysiology and clinical manifestations of COVID-19.|pdf=|usr=}}
+{{tp|p=35432617|t=2022. On the role of data, statistics and decisions in a pandemic.|pdf=|usr=}}
+{{tp|p=35582066|t=2022. RHAMNETIN IS A BETTER INHIBITOR OF SARS-COV-2 2'-O-METHYLTRANSFERASE THAN DOLUTEGRAVIR: A COMPUTATIONAL PREDICTION.|pdf=|usr=}}
+{{tp|p=35496992|t=2022. Role of vitamin C in preventing of COVID-19 infection, progression and severity.|pdf=|usr=}}
+{{tp|p=35477923|t=2022. Hypercoagulability, endotheliopathy, and inflammation approximating 1 year after recovery: Assessing the long-term outcomes in COVID-19 patients.|pdf=|usr=}}
+{{tp|p=33877321|t=2021. A Cytokine/Bradykinin Storm Comparison: What Is the Relationship Between Hypertension and COVID-19?|pdf=|usr=}}
+{{tp|p=33198951|t=2021. MMR Vaccination: A Potential Strategy to Reduce Severity and Mortality of COVID-19 Illness.|pdf=|usr=}}
+{{tp|p=32501731|t=2020. Cholesterol: A new game player accelerating vasculopathy caused by SARS-CoV-2?|pdf=|usr=}}
+{{tp|p=34231390|t=2021. Erythrocytes identify complement activation in patients with COVID-19.|pdf=|usr=}}
+{{tp|p=32996774|t=2020. Vitamin D supplementation as a rational pharmacological approach in the COVID-19 pandemic.|pdf=|usr=}}
+{{tp|p=34534435|t=2021. Dynamics of the Upper Respiratory Tract Microbiota and Its Association with Mortality in COVID-19.|pdf=|usr=}}
+{{tp|p=32866033|t=2020. Uncontrolled Innate and Impaired Adaptive Immune Responses in Patients with COVID-19 Acute Respiratory Distress Syndrome.|pdf=|usr=}}
+{{tp|p=33064451|t=2020. Comprehensive Analysis of the Glycan Complement of SARS-CoV-2 Spike Proteins Using Signature Ions-Triggered Electron-Transfer/Higher-Energy Collisional Dissociation (EThcD) Mass Spectrometry.|pdf=|usr=}}
+{{tp|p=32678978|t=2020. The Utility of Native MS for Understanding the Mechanism of Action of Repurposed Therapeutics in COVID-19: Heparin as a Disruptor of the SARS-CoV-2 Interaction with Its Host Cell Receptor.|pdf=|usr=}}
+{{tp|p=35191576|t=2022. The SARS-CoV-2 Spike Glycoprotein Directly Binds Exogeneous Sialic Acids: A NMR View.|pdf=|usr=}}
+{{tp|p=34184164|t=2021. COVID-19 is a systemic vascular hemopathy: insight for mechanistic and clinical aspects.|pdf=|usr=}}
+{{tp|p=33440681|t=2021. Viroinformatics-Based Analysis of SARS-CoV-2 Core Proteins for Potential Therapeutic Targets.|pdf=|usr=}}
+{{tp|p=32575554|t=2020. Targeting the Heme-Heme Oxygenase System to Prevent Severe Complications Following COVID-19 Infections.|pdf=|usr=}}
+{{tp|p=34562174|t=2021. Cryo-EM as a powerful tool for drug discovery: recent structural based studies of SARS-CoV-2.|pdf=|usr=}}
+{{tp|p=32493627|t=2020. Structural Proteins in Severe Acute Respiratory Syndrome Coronavirus-2.|pdf=|usr=}}
+{{tp|p=32550242|t=2020. SARS-CoV-2 Entry Genes Are Most Highly Expressed in Nasal Goblet and Ciliated Cells within Human Airways.|pdf=|usr=}}
+{{tp|p=34191753|t=2021. Renal Considerations in COVID-19: Biology, Pathology, and Pathophysiology.|pdf=|usr=}}
+{{tp|p=33899609|t=2021. COVID-19: captures iron and generates reactive oxygen species to damage the human immune system.|pdf=|usr=}}
+{{tp|p=35063769|t=2022. How tetraspanin-mediated cell entry of SARS-CoV-2 can dysregulate the shedding of the ACE2 receptor by ADAM17.|pdf=|usr=}}
+{{tp|p=34416436|t=2021. A model for COVID-19-induced dysregulation of ACE2 shedding by ADAM17.|pdf=|usr=}}
+{{tp|p=33309272|t=2021. Identification of antiviral antihistamines for COVID-19 repurposing.|pdf=|usr=}}
+{{tp|p=32943188|t=2021. RNA-dependent RNA polymerase: Structure, mechanism, and drug discovery for COVID-19.|pdf=|usr=}}
+{{tp|p=34116356|t=2021. Analysis of the molecular mechanism of SARS-CoV-2 antibodies.|pdf=|usr=}}
+{{tp|p=32977949|t=2020. Andrographolide and its fluorescent derivative inhibit the main proteases of 2019-nCoV and SARS-CoV through covalent linkage.|pdf=|usr=}}
+{{tp|p=34871367|t=2021. NAD+-consuming enzymes in immune defense against viral infection.|pdf=|usr=}}
+{{tp|p=32293875|t=2020. Why Are Lopinavir and Ritonavir Effective against the Newly Emerged Coronavirus 2019? Atomistic Insights into the Inhibitory Mechanisms.|pdf=|usr=}}
+{{tp|p=34565312|t=2021. Non-Canonical Translation Initiation Mechanisms Employed by Eukaryotic Viral mRNAs.|pdf=|usr=}}
+{{tp|p=33838638|t=2021. Free SARS-CoV-2 Spike Protein S1 Particles May Play a Role in the Pathogenesis of COVID-19 Infection.|pdf=|usr=}}
+{{tp|p=34662705|t=2022. Sequence complementarity between human noncoding RNAs and SARS-CoV-2 genes: What are the implications for human health?|pdf=|usr=}}
+{{tp|p=33484784|t=2021. Protein structural heterogeneity: A hypothesis for the basis of proteolytic recognition by the main protease of SARS-CoV and SARS-CoV-2.|pdf=|usr=}}
+{{tp|p=35411301|t=2022. Gut microbial signature and gut-lung axis: A possible role in the therapy of COVID-19.|pdf=|usr=}}
+{{tp|p=32793443|t=2020. Computational-based drug repurposing methods in COVID-19.|pdf=|usr=}}
+{{tp|p=32994678|t=2020. Comparative molecular docking analysis of the SARS CoV-2 Spike glycoprotein with the human ACE-2 receptors and thrombin.|pdf=|usr=}}
+{{tp|p=33600624|t=2021. Intracellular host cell membrane remodelling induced by SARS-CoV-2 infection in vitro.|pdf=|usr=}}
+{{tp|p=33666950|t=2021. A comprehensive library of fluorescent constructs of SARS-CoV-2 proteins and their initial characterisation in different cell types.|pdf=|usr=}}
+{{tp|p=33066821|t=2020. COVID-19 and iron dysregulation: distant sequence similarity between hepcidin and the novel coronavirus spike glycoprotein.|pdf=|usr=}}
+{{tp|p=32572334|t=2020. Application of System Biology to Explore the Association of Neprilysin, Angiotensin-Converting Enzyme 2 (ACE2), and Carbonic Anhydrase (CA) in Pathogenesis of SARS-CoV-2.|pdf=|usr=}}
+{{tp|p=35053123|t=2022. The COVID-19 Infection Diffusion in the US and Japan: A Graph-Theoretical Approach.|pdf=|usr=}}
+{{tp|p=35336746|t=2022. NF-kappaB Signaling and Inflammation-Drug Repurposing to Treat Inflammatory Disorders?|pdf=|usr=}}
+{{tp|p=34072585|t=2021. Immune Responses to SARS-CoV2 Mirror Societal Responses to COVID-19: Identifying Factors Underlying a Successful Viral Response.|pdf=|usr=}}
+{{tp|p=33669895|t=2021. Are There Any Parameters Missing in the Mathematical Models Applied in the Process of Spreading COVID-19?|pdf=|usr=}}
+{{tp|p=35053020|t=2021. SARS-CoV-2 Infection and Pancreatic beta Cell Failure.|pdf=|usr=}}
+{{tp|p=34571729|t=2021. The Role of Acidosis in the Pathogenesis of Severe Forms of COVID-19.|pdf=|usr=}}
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+{{tp|p=32580293|t=2020. A Brief Theory of Epidemic Kinetics.|pdf=|usr=}}
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+{{tp|p=34667599|t=2021. Endothelial dysfunction and COVID-19 (Review).|pdf=|usr=}}
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+{{tp|p=35453663|t=2022. Inorganic Polyphosphate-Regulator of Cellular Metabolism in Homeostasis and Disease.|pdf=|usr=}}
+{{tp|p=33808956|t=2021. Brain Metabolic Correlates of Persistent Olfactory Dysfunction after SARS-Cov2 Infection.|pdf=|usr=}}
+{{tp|p=34440207|t=2021. Multiple-Organ Complement Deposition on Vascular Endothelium in COVID-19 Patients.|pdf=|usr=}}
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+{{tp|p=35053224|t=2022. Calcium Signaling Pathway Is Involved in the Shedding of ACE2 Catalytic Ectodomain: New Insights for Clinical and Therapeutic Applications of ACE2 for COVID-19.|pdf=|usr=}}
+{{tp|p=35204727|t=2022. New Insights into the Role of the Complement System in Human Viral Diseases.|pdf=|usr=}}
+{{tp|p=34827621|t=2021. The Effects of Vitamin D on Immune System and Inflammatory Diseases.|pdf=|usr=}}
+{{tp|p=34634813|t=2022. VarEPS: an evaluation and prewarning system of known and virtual variations of SARS-CoV-2 genomes.|pdf=|usr=}}
+{{tp|p=34396391|t=2022. T-CoV: a comprehensive portal of HLA-peptide interactions affected by SARS-CoV-2 mutations.|pdf=|usr=}}
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+{{tp|p=34733373|t=2021. Association between Hypomagnesemia, COVID-19, Respiratory Tract and Lung Disease.|pdf=|usr=}}
+{{tp|p=35215199|t=2022. SARS-CoV-2 Infects Primary Neurons from Human ACE2 Expressing Mice and Upregulates Genes Involved in the Inflammatory and Necroptotic Pathways.|pdf=|usr=}}
+{{tp|p=33809954|t=2021. Why Does SARS-CoV-2 Infection Induce Autoantibody Production?|pdf=|usr=}}
+{{tp|p=33196056|t=2021. KG-COVID-19: A Framework to Produce Customized Knowledge Graphs for COVID-19 Response.|pdf=|usr=}}
+{{tp|p=33025261|t=2020. A Systems Biology Workflow for Drug and Vaccine Repurposing: Identifying Small-Molecule BCG Mimics to Reduce or Prevent COVID-19 Mortality.|pdf=|usr=}}
+{{tp|p=35631444|t=2022. Integrin/TGF-beta1 Inhibitor GLPG-0187 Blocks SARS-CoV-2 Delta and Omicron Pseudovirus Infection of Airway Epithelial Cells In Vitro, Which Could Attenuate Disease Severity.|pdf=|usr=}}
+{{tp|p=33477294|t=2021. COVID-19-The Potential Beneficial Therapeutic Effects of Spironolactone during SARS-CoV-2 Infection.|pdf=|usr=}}
+{{tp|p=33687995|t=2021. Therapeutic Targeting of the Complement System: From Rare Diseases to Pandemics.|pdf=|usr=}}
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+{{tp|p=34735434|t=2021. Mouse-adapted SARS-CoV-2 protects animals from lethal SARS-CoV challenge.|pdf=|usr=}}
+{{tp|p=33750978|t=2021. A quantitative model used to compare within-host SARS-CoV-2, MERS-CoV, and SARS-CoV dynamics provides insights into the pathogenesis and treatment of SARS-CoV-2.|pdf=|usr=}}
+{{tp|p=34962926|t=2021. A genome-wide CRISPR screen identifies interactors of the autophagy pathway as conserved coronavirus targets.|pdf=|usr=}}
+{{tp|p=35255089|t=2022. Multiphysics and multiscale modeling of microthrombosis in COVID-19.|pdf=|usr=}}
+{{tp|p=34159794|t=2021. Endothelial metabolism in pulmonary vascular homeostasis and acute respiratory distress syndrome.|pdf=|usr=}}
+{{tp|p=35471837|t=2022. Emerging Paradigms in Type 2 Immunity.|pdf=|usr=}}
+{{tp|p=35285479|t=2022. Drug repurposing in silico screening platforms.|pdf=|usr=}}
+{{tp|p=32510142|t=2020. alpha-glucosidase inhibitors as host-directed antiviral agents with potential for the treatment of COVID-19.|pdf=|usr=}}
+{{tp|p=33349063|t=2021. Potential protective effects of antihypertensive treatments during the Covid-19 pandemic: from inhibitors of the renin-angiotensin system to beta-adrenergic receptor blockers.|pdf=|usr=}}
+{{tp|p=34514483|t=2021. Zinc(2+) ion inhibits SARS-CoV-2 main protease and viral replication in vitro.|pdf=|usr=}}
+{{tp|p=32633733|t=2020. Interaction of hydroxychloroquine with SARS-CoV2 functional proteins using all-atoms non-equilibrium alchemical simulations.|pdf=|usr=}}
+{{tp|p=33084150|t=2021. Why Does the Novel Coronavirus Spike Protein Interact so Strongly with the Human ACE2? A Thermodynamic Answer.|pdf=|usr=}}
+{{tp|p=33160533|t=2020. Chicken Soup for the Treatment of Respiratory Infections.|pdf=|usr=}}
+{{tp|p=33285628|t=2021. Interstitial lung opacities in patients with severe COVID-19 pneumonia by bedside high-resolution ultrasound in association to CO2 retention.|pdf=|usr=}}
+{{tp|p=34369712|t=2021. Novel Coronavirus: A Review from Origin to Current Status of Therapeutic Strategies.|pdf=|usr=}}
+{{tp|p=33463917|t=2020. Minireview: The Introduction of COVID-19 and Microvascular Disease-Introduction of COVID-19 and the Relationship between Its Receptor and Diabetic Vascular Complications.|pdf=|usr=}}
+{{tp|p=34470511|t=2021. Vitamin D in respiratory viral infections: a key immune modulator?|pdf=|usr=}}
+{{tp|p=34488601|t=2022. Structural Understanding of SARS-CoV-2 Drug Targets, Active Site Contour Map Analysis and COVID-19 Therapeutics.|pdf=|usr=}}
+{{tp|p=32772742|t=2020. Non-chemical signatures of biological materials: Radio signals from Covid19?|pdf=|usr=}}
+{{tp|p=34983356|t=2022. Metainflammation in COVID-19.|pdf=|usr=}}
+{{tp|p=34081326|t=2021. Flow cytometry data mining by cytoChain identifies determinants of exhaustion and stemness in TCR-engineered T cells.|pdf=|usr=}}
+{{tp|p=34823627|t=2021. Alveolar macrophages: novel therapeutic targets for respiratory diseases.|pdf=|usr=}}
+{{tp|p=34142714|t=2021. The angiotensin converting enzyme 2 (ACE2) system in the brain: possible involvement in Neuro-Covid.|pdf=|usr=}}
+{{tp|p=34881529|t=2021. Clustered regularly interspaced short palindromic repeats, a glimpse - impacts in molecular biology, trends and highlights.|pdf=|usr=}}
+{{tp|p=34864654|t=2022. COVID-19 pandemic: Insights into genetic susceptibility to SARS-CoV-2 and host genes implications on virus spread, disease severity and outcomes.|pdf=|usr=}}
+{{tp|p=34715018|t=2021. APOL1 risk variants in individuals of African genetic ancestry drive endothelial cell defects that exacerbate sepsis.|pdf=|usr=}}
+{{tp|p=35068397|t=2022. An Overview of Antiviral Properties of Bacteriophages with Emphasis on the Treatment of COVID-19 Infection.|pdf=|usr=}}